Wall clock time and date at job start Tue Mar 31 2020 14:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.41886 * 2 1 4 4 C 1.54905 * 110.37107 * 237.69033 * 2 1 3 5 5 C 1.55136 * 101.65253 * 204.09734 * 4 2 1 6 6 C 1.54318 * 103.01949 * 35.65430 * 5 4 2 7 7 H 1.09002 * 110.02662 * 97.19583 * 6 5 4 8 8 C 1.53003 * 109.88784 * 218.31064 * 6 5 4 9 9 N 1.47444 * 107.23238 * 337.71404 * 6 5 4 10 10 C 1.46893 * 111.00103 * 236.74254 * 9 6 5 11 11 C 1.53001 * 109.47387 * 170.00142 * 10 9 6 12 12 H 1.09012 * 109.46744 * 305.00337 * 11 10 9 13 13 O 1.42906 * 109.47135 * 64.99645 * 11 10 9 14 14 C 1.52998 * 109.47733 * 185.00102 * 11 10 9 15 15 O 1.42892 * 109.47539 * 174.99788 * 14 11 10 16 16 C 1.35670 * 117.00199 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.81627 * 0.02562 * 16 15 14 18 18 C 1.36444 * 120.18209 * 180.02562 * 17 16 15 19 19 C 1.40827 * 119.81301 * 359.97438 * 18 17 16 20 20 C 1.41221 * 120.17737 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99812 * 150.20056 * 20 19 18 22 22 C 1.39888 * 119.99796 * 330.19864 * 20 19 18 23 23 N 1.30888 * 119.99714 * 161.70139 * 22 20 19 24 24 Si 1.86799 * 120.00227 * 341.69389 * 22 20 19 25 25 H 1.48501 * 109.47137 * 95.41272 * 24 22 20 26 26 H 1.48503 * 109.47376 * 215.41387 * 24 22 20 27 27 H 1.48500 * 109.47225 * 335.41535 * 24 22 20 28 28 C 1.40828 * 119.64447 * 0.02562 * 19 18 17 29 29 C 1.36442 * 119.81226 * 359.97438 * 28 19 18 30 30 H 1.08999 * 109.46932 * 297.68390 * 1 2 3 31 31 H 1.09003 * 109.47388 * 57.68145 * 1 2 3 32 32 H 1.08998 * 109.47464 * 177.68675 * 1 2 3 33 33 H 1.09005 * 110.99464 * 86.00498 * 4 2 1 34 34 H 1.08998 * 111.02361 * 322.20570 * 4 2 1 35 35 H 1.09001 * 110.71051 * 277.27254 * 5 4 2 36 36 H 1.09005 * 110.70885 * 154.03663 * 5 4 2 37 37 H 1.09009 * 109.46918 * 177.77036 * 8 6 5 38 38 H 1.09003 * 109.46772 * 297.76626 * 8 6 5 39 39 H 1.08991 * 109.47041 * 57.77090 * 8 6 5 40 40 H 1.09001 * 109.47535 * 50.00181 * 10 9 6 41 41 H 1.08995 * 109.47652 * 290.00088 * 10 9 6 42 42 H 0.96701 * 113.99704 * 60.00422 * 13 11 10 43 43 H 1.09007 * 109.46634 * 54.99706 * 14 11 10 44 44 H 1.09003 * 109.47184 * 295.00103 * 14 11 10 45 45 H 1.07998 * 119.90899 * 0.02562 * 17 16 15 46 46 H 1.08000 * 120.08877 * 180.27915 * 18 17 16 47 47 H 0.96997 * 119.99695 * 180.02562 * 23 22 20 48 48 H 1.07999 * 120.09744 * 180.02562 * 28 19 18 49 49 H 1.07992 * 119.91040 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0692 -0.7762 -1.2273 5 6 3.4785 -1.1994 -0.7360 6 6 3.2536 -1.4807 0.7646 7 1 3.1066 -2.5486 0.9263 8 6 4.4584 -0.9932 1.5719 9 7 2.0448 -0.7409 1.1713 10 6 2.3358 0.1716 2.2850 11 6 1.1374 1.0947 2.5147 12 1 0.8909 1.6080 1.5852 13 8 0.0152 0.3206 2.9434 14 6 1.4864 2.1258 3.5898 15 8 0.4120 3.0586 3.7218 16 6 0.5630 4.0461 4.6397 17 6 1.7287 4.1133 5.3995 18 6 1.8882 5.1030 6.3252 19 6 0.8704 6.0584 6.5110 20 6 1.0271 7.0857 7.4673 21 1 0.5515 8.0432 7.3141 22 6 1.7983 6.8630 8.6130 23 7 2.2435 7.8777 9.3095 24 14 2.1925 5.1175 9.1489 25 1 3.5232 4.7255 8.6188 26 1 2.2102 5.0470 10.6321 27 1 1.1576 4.1921 8.6216 28 6 -0.3049 5.9833 5.7389 29 6 -0.4487 4.9873 4.8174 30 1 -0.3633 0.4774 0.9100 31 1 -0.3634 0.5494 -0.8685 32 1 -0.3634 -1.0268 -0.0415 33 1 2.1387 -0.1270 -2.1003 34 1 1.4517 -1.6487 -1.4404 35 1 4.1941 -0.3887 -0.8730 36 1 3.8119 -2.1003 -1.2512 37 1 4.2755 -1.1590 2.6336 38 1 5.3477 -1.5443 1.2660 39 1 4.6102 0.0709 1.3912 40 1 3.2145 0.7701 2.0444 41 1 2.5269 -0.4072 3.1886 42 1 0.1635 -0.1645 3.7666 43 1 2.3948 2.6559 3.3034 44 1 1.6463 1.6187 4.5413 45 1 2.5085 3.3801 5.2554 46 1 2.7944 5.1563 6.9102 47 1 2.7786 7.7233 10.1037 48 1 -1.0899 6.7124 5.8751 49 1 -1.3495 4.9280 4.2247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610711887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:28 Heat of formation + Delta-G solvation = -60.735759 kcal Electronic energy + Delta-G solvation = -27165.931736 eV Core-core repulsion = 23479.066837 eV Total energy + Delta-G solvation = -3686.864899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.36200 -39.05634 -37.32884 -36.11454 -33.36500 -33.21285 -32.51057 -30.41785 -29.84571 -29.22317 -28.31096 -25.70791 -24.46601 -24.08829 -22.32016 -21.48413 -20.97707 -20.35351 -19.47778 -17.48577 -17.39710 -16.82940 -16.49793 -16.29821 -15.71591 -15.23408 -14.81762 -14.57871 -14.29638 -14.02093 -13.79064 -13.37385 -13.19354 -13.02818 -12.94111 -12.73394 -12.65965 -12.56800 -12.45834 -12.00652 -11.86961 -11.83484 -11.58163 -11.43159 -11.16134 -11.08720 -10.98753 -10.82961 -10.79177 -10.60182 -10.33555 -10.13795 -9.96357 -9.88802 -9.50636 -9.07960 -8.48625 -7.93531 -7.20067 -6.92564 -4.39223 2.53332 2.62220 3.08236 3.19494 3.30684 3.40761 3.88618 3.97999 4.30686 4.33201 4.42527 4.47988 4.55823 4.84582 4.88072 4.91571 5.02491 5.04315 5.08026 5.17129 5.24156 5.29430 5.37969 5.40879 5.46235 5.50750 5.54703 5.59317 5.68903 5.75738 5.79600 5.83509 5.92388 5.97328 6.00066 6.03441 6.39901 6.44752 6.61271 6.77220 6.79737 6.83777 6.96298 7.15557 7.41554 7.51458 7.70323 7.78587 7.93020 8.28302 8.39102 8.67891 8.81965 10.10681 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.002652 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.402303 B =10554.286910 C =11240.699466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 H 0.052 0.948 4 C -0.126 4.126 5 C -0.140 4.140 6 C 0.068 3.932 7 H 0.086 0.914 8 C -0.172 4.172 9 N -0.509 5.509 10 C 0.016 3.984 11 C 0.106 3.894 12 H 0.110 0.890 13 O -0.538 6.538 14 C 0.036 3.964 15 O -0.315 6.315 16 C -0.009 4.009 17 C -0.153 4.153 18 C -0.209 4.209 19 C 0.071 3.929 20 C -0.450 4.450 21 H 0.090 0.910 22 C 0.083 3.917 23 N -0.813 5.813 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.291 1.291 27 H -0.245 1.245 28 C -0.177 4.177 29 C -0.101 4.101 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.371 0.629 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.284 0.716 48 H 0.109 0.891 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -18.240 -15.757 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.042 4.042 3 H 0.070 0.930 4 C -0.164 4.164 5 C -0.178 4.178 6 C -0.040 4.040 7 H 0.104 0.896 8 C -0.230 4.230 9 N -0.234 5.234 10 C -0.112 4.112 11 C 0.047 3.953 12 H 0.127 0.873 13 O -0.343 6.343 14 C -0.041 4.041 15 O -0.230 6.230 16 C -0.052 4.052 17 C -0.172 4.172 18 C -0.229 4.229 19 C 0.068 3.932 20 C -0.479 4.479 21 H 0.108 0.892 22 C -0.135 4.135 23 N -0.438 5.438 24 Si 0.736 3.264 25 H -0.199 1.199 26 H -0.218 1.218 27 H -0.168 1.168 28 C -0.196 4.196 29 C -0.119 4.119 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.218 0.782 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.120 0.880 47 H 0.094 0.906 48 H 0.127 0.873 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.875 -18.207 -16.016 24.419 hybrid contribution 1.692 -0.270 0.820 1.899 sum 4.567 -18.477 -15.197 24.356 Atomic orbital electron populations 1.22000 0.93167 1.02551 1.02832 1.22599 0.96804 0.95693 0.89064 0.92977 1.22759 0.95845 1.00441 0.97325 1.22887 0.97549 1.01707 0.95664 1.22443 0.88570 0.99325 0.93684 0.89641 1.22384 0.98221 1.01469 1.00904 1.63723 1.27588 1.25687 1.06352 1.23009 0.97184 0.95027 0.95978 1.22063 0.86279 0.89395 0.97582 0.87288 1.86591 1.37904 1.64794 1.45030 1.23178 0.90797 0.91311 0.98831 1.85882 1.41387 1.38574 1.57190 1.18556 0.96986 0.93237 0.96403 1.20478 0.96569 1.00463 0.99703 1.20620 0.99614 1.00019 1.02614 1.17725 0.90350 0.91928 0.93195 1.19375 1.26141 0.99684 1.02649 0.89188 1.26115 0.92012 0.99231 0.96098 1.69726 1.25798 1.33193 1.15105 0.86351 0.80277 0.83306 0.76507 1.19905 1.21819 1.16840 1.20680 0.97862 1.00066 1.01032 1.19767 0.97061 0.95116 1.00000 0.89579 0.93160 0.92335 0.90980 0.90559 0.91423 0.90873 0.91754 0.92064 0.92237 0.92826 0.89989 0.78202 0.92547 0.92792 0.88481 0.87998 0.90604 0.87316 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.99 37.16 0.33 -1.20 16 2 C 0.07 0.63 2.37 -66.19 -0.16 0.48 16 3 H 0.05 0.53 7.06 -51.93 -0.37 0.16 16 4 C -0.13 -0.98 6.49 -24.60 -0.16 -1.14 16 5 C -0.14 -1.00 6.47 -24.91 -0.16 -1.16 16 6 C 0.07 0.55 4.02 -66.72 -0.27 0.28 16 7 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.17 -1.26 7.79 37.16 0.29 -0.97 16 9 N -0.51 -4.91 4.93 -215.54 -1.06 -5.98 16 10 C 0.02 0.16 3.54 -3.83 -0.01 0.15 16 11 C 0.11 1.27 2.35 -26.73 -0.06 1.21 16 12 H 0.11 1.40 5.23 -51.92 -0.27 1.13 16 13 O -0.54 -6.82 11.44 -40.08 -0.46 -7.28 16 14 C 0.04 0.52 4.36 37.16 0.16 0.68 16 15 O -0.31 -6.01 10.09 -23.56 -0.24 -6.25 16 16 C -0.01 -0.18 6.71 -38.78 -0.26 -0.44 16 17 C -0.15 -3.34 8.96 -39.83 -0.36 -3.70 16 18 C -0.21 -5.07 7.11 -39.25 -0.28 -5.35 16 19 C 0.07 1.81 5.10 -106.81 -0.55 1.26 16 20 C -0.45 -12.21 9.56 -37.83 -0.36 -12.57 16 21 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 22 C 0.08 2.20 5.40 -17.34 -0.09 2.10 16 23 N -0.81 -21.84 13.93 55.54 0.77 -21.07 16 24 Si 0.91 20.89 24.52 -169.99 -4.17 16.72 16 25 H -0.27 -6.06 6.71 56.52 0.38 -5.68 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.25 -5.79 6.87 56.52 0.39 -5.41 16 28 C -0.18 -4.14 9.74 -39.25 -0.38 -4.52 16 29 C -0.10 -2.21 9.92 -39.83 -0.40 -2.60 16 30 H 0.09 1.07 4.27 -51.93 -0.22 0.85 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 6.87 -51.92 -0.36 0.12 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 40 H 0.05 0.50 5.85 -51.93 -0.30 0.20 16 41 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 42 H 0.37 3.68 9.05 45.56 0.41 4.09 16 43 H 0.06 0.79 7.64 -51.93 -0.40 0.39 16 44 H 0.05 0.75 7.65 -51.93 -0.40 0.35 16 45 H 0.10 1.83 6.27 -52.49 -0.33 1.50 16 46 H 0.10 2.45 4.75 -52.49 -0.25 2.21 16 47 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 48 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 49 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -29.04 370.20 -9.29 -38.33 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.00 Total: 7.44 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -2.71 Total: -27.49 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: -0.29 Total: -27.04 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.70 Total: -13.53 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.17 Total: 16.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.04 -9.29 -38.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610711887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.407 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds