Wall clock time and date at job start Tue Mar 31 2020 14:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.41886 * 2 1 4 4 C 1.54905 * 110.37107 * 237.69033 * 2 1 3 5 5 C 1.55136 * 101.65253 * 204.09734 * 4 2 1 6 6 C 1.54318 * 103.01949 * 35.65430 * 5 4 2 7 7 H 1.09002 * 110.02662 * 97.19583 * 6 5 4 8 8 C 1.53003 * 109.88784 * 218.31064 * 6 5 4 9 9 N 1.47444 * 107.23238 * 337.71404 * 6 5 4 10 10 C 1.46893 * 111.00103 * 236.74254 * 9 6 5 11 11 C 1.53001 * 109.47387 * 170.00142 * 10 9 6 12 12 H 1.09012 * 109.46744 * 305.00337 * 11 10 9 13 13 O 1.42906 * 109.47135 * 64.99645 * 11 10 9 14 14 C 1.52998 * 109.47733 * 185.00102 * 11 10 9 15 15 O 1.42892 * 109.47539 * 174.99788 * 14 11 10 16 16 C 1.35670 * 117.00199 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.81627 * 0.02562 * 16 15 14 18 18 C 1.36444 * 120.18209 * 180.02562 * 17 16 15 19 19 C 1.40827 * 119.81301 * 359.97438 * 18 17 16 20 20 C 1.41221 * 120.17737 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99812 * 150.20056 * 20 19 18 22 22 C 1.39888 * 119.99796 * 330.19864 * 20 19 18 23 23 N 1.30888 * 119.99714 * 161.70139 * 22 20 19 24 24 Si 1.86799 * 120.00227 * 341.69389 * 22 20 19 25 25 H 1.48501 * 109.47137 * 95.41272 * 24 22 20 26 26 H 1.48503 * 109.47376 * 215.41387 * 24 22 20 27 27 H 1.48500 * 109.47225 * 335.41535 * 24 22 20 28 28 C 1.40828 * 119.64447 * 0.02562 * 19 18 17 29 29 C 1.36442 * 119.81226 * 359.97438 * 28 19 18 30 30 H 1.08999 * 109.46932 * 297.68390 * 1 2 3 31 31 H 1.09003 * 109.47388 * 57.68145 * 1 2 3 32 32 H 1.08998 * 109.47464 * 177.68675 * 1 2 3 33 33 H 1.09005 * 110.99464 * 86.00498 * 4 2 1 34 34 H 1.08998 * 111.02361 * 322.20570 * 4 2 1 35 35 H 1.09001 * 110.71051 * 277.27254 * 5 4 2 36 36 H 1.09005 * 110.70885 * 154.03663 * 5 4 2 37 37 H 1.09009 * 109.46918 * 177.77036 * 8 6 5 38 38 H 1.09003 * 109.46772 * 297.76626 * 8 6 5 39 39 H 1.08991 * 109.47041 * 57.77090 * 8 6 5 40 40 H 1.09001 * 109.47535 * 50.00181 * 10 9 6 41 41 H 1.08995 * 109.47652 * 290.00088 * 10 9 6 42 42 H 0.96701 * 113.99704 * 60.00422 * 13 11 10 43 43 H 1.09007 * 109.46634 * 54.99706 * 14 11 10 44 44 H 1.09003 * 109.47184 * 295.00103 * 14 11 10 45 45 H 1.07998 * 119.90899 * 0.02562 * 17 16 15 46 46 H 1.08000 * 120.08877 * 180.27915 * 18 17 16 47 47 H 0.96997 * 119.99695 * 180.02562 * 23 22 20 48 48 H 1.07999 * 120.09744 * 180.02562 * 28 19 18 49 49 H 1.07992 * 119.91040 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0692 -0.7762 -1.2273 5 6 3.4785 -1.1994 -0.7360 6 6 3.2536 -1.4807 0.7646 7 1 3.1066 -2.5486 0.9263 8 6 4.4584 -0.9932 1.5719 9 7 2.0448 -0.7409 1.1713 10 6 2.3358 0.1716 2.2850 11 6 1.1374 1.0947 2.5147 12 1 0.8909 1.6080 1.5852 13 8 0.0152 0.3206 2.9434 14 6 1.4864 2.1258 3.5898 15 8 0.4120 3.0586 3.7218 16 6 0.5630 4.0461 4.6397 17 6 1.7287 4.1133 5.3995 18 6 1.8882 5.1030 6.3252 19 6 0.8704 6.0584 6.5110 20 6 1.0271 7.0857 7.4673 21 1 0.5515 8.0432 7.3141 22 6 1.7983 6.8630 8.6130 23 7 2.2435 7.8777 9.3095 24 14 2.1925 5.1175 9.1489 25 1 3.5232 4.7255 8.6188 26 1 2.2102 5.0470 10.6321 27 1 1.1576 4.1921 8.6216 28 6 -0.3049 5.9833 5.7389 29 6 -0.4487 4.9873 4.8174 30 1 -0.3633 0.4774 0.9100 31 1 -0.3634 0.5494 -0.8685 32 1 -0.3634 -1.0268 -0.0415 33 1 2.1387 -0.1270 -2.1003 34 1 1.4517 -1.6487 -1.4404 35 1 4.1941 -0.3887 -0.8730 36 1 3.8119 -2.1003 -1.2512 37 1 4.2755 -1.1590 2.6336 38 1 5.3477 -1.5443 1.2660 39 1 4.6102 0.0709 1.3912 40 1 3.2145 0.7701 2.0444 41 1 2.5269 -0.4072 3.1886 42 1 0.1635 -0.1645 3.7666 43 1 2.3948 2.6559 3.3034 44 1 1.6463 1.6187 4.5413 45 1 2.5085 3.3801 5.2554 46 1 2.7944 5.1563 6.9102 47 1 2.7786 7.7233 10.1037 48 1 -1.0899 6.7124 5.8751 49 1 -1.3495 4.9280 4.2247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610711887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:27 Heat of formation + Delta-G solvation = -79.935639 kcal Electronic energy + Delta-G solvation = -27166.764305 eV Core-core repulsion = 23479.066837 eV Total energy + Delta-G solvation = -3687.697468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.18754 -40.55010 -38.67345 -37.44582 -35.26242 -33.90457 -33.27466 -32.05334 -31.61809 -30.42027 -29.00185 -26.97498 -25.90727 -24.89619 -23.67628 -22.81977 -22.15636 -21.55473 -20.24837 -19.40170 -18.90007 -17.87936 -17.49594 -17.18194 -16.95720 -16.54310 -15.99656 -15.77332 -15.69877 -15.29037 -15.00708 -14.77321 -14.40706 -14.28309 -14.15442 -13.88062 -13.73732 -13.54696 -13.49778 -13.36403 -13.23746 -12.76112 -12.65336 -12.59296 -12.26013 -12.17326 -12.10027 -12.00551 -11.81487 -11.65603 -11.59880 -11.51717 -11.43443 -11.27014 -10.92895 -10.85258 -9.73307 -9.18853 -9.01947 -8.87309 -6.39257 0.72330 0.78278 1.24286 1.38725 1.48137 2.12131 2.31428 2.57870 2.98715 3.45138 3.48618 3.63176 3.73359 3.88593 3.96442 3.99925 4.06467 4.15036 4.19274 4.22474 4.29998 4.39783 4.42649 4.45894 4.55348 4.62897 4.65241 4.75209 4.82017 4.82285 4.88018 4.96601 4.97673 4.99203 5.07174 5.14272 5.16288 5.18839 5.29257 5.32166 5.42322 5.58600 5.59667 5.70025 5.85804 6.09479 6.10539 6.14743 6.31241 6.57964 6.79895 6.88228 6.92849 8.21916 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.002652 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.402303 B =10554.286910 C =11240.699466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.123 4.123 5 C -0.135 4.135 6 C 0.065 3.935 7 H 0.086 0.914 8 C -0.168 4.168 9 N -0.519 5.519 10 C 0.024 3.976 11 C 0.118 3.882 12 H 0.099 0.901 13 O -0.553 6.553 14 C 0.027 3.973 15 O -0.323 6.323 16 C 0.013 3.987 17 C -0.158 4.158 18 C -0.215 4.215 19 C 0.046 3.954 20 C -0.485 4.485 21 H 0.056 0.944 22 C 0.045 3.955 23 N -0.855 5.855 24 Si 0.963 3.037 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.255 1.255 28 C -0.181 4.181 29 C -0.110 4.110 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.382 0.618 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.102 0.898 47 H 0.292 0.708 48 H 0.114 0.886 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -21.347 -17.231 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 H 0.064 0.936 4 C -0.161 4.161 5 C -0.174 4.174 6 C -0.043 4.043 7 H 0.104 0.896 8 C -0.226 4.226 9 N -0.244 5.244 10 C -0.104 4.104 11 C 0.058 3.942 12 H 0.116 0.884 13 O -0.359 6.359 14 C -0.050 4.050 15 O -0.239 6.239 16 C -0.031 4.031 17 C -0.177 4.177 18 C -0.235 4.235 19 C 0.044 3.956 20 C -0.515 4.515 21 H 0.074 0.926 22 C -0.168 4.168 23 N -0.482 5.482 24 Si 0.786 3.214 25 H -0.182 1.182 26 H -0.204 1.204 27 H -0.179 1.179 28 C -0.200 4.200 29 C -0.129 4.129 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.231 0.769 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.120 0.880 47 H 0.102 0.898 48 H 0.132 0.868 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.987 -21.327 -17.502 27.876 hybrid contribution 1.247 0.557 1.035 1.713 sum 5.233 -20.770 -16.467 27.018 Atomic orbital electron populations 1.21929 0.94008 1.02028 1.02092 1.22596 0.96124 0.95694 0.90029 0.93602 1.22746 0.96170 1.00335 0.96861 1.22876 0.97090 1.02358 0.95042 1.22502 0.88241 0.99070 0.94450 0.89644 1.22344 0.98273 1.01294 1.00707 1.63706 1.28640 1.25657 1.06383 1.22927 0.96049 0.94832 0.96590 1.21953 0.87010 0.89104 0.96142 0.88354 1.86581 1.38517 1.64968 1.45882 1.23560 0.89959 0.90998 1.00438 1.85902 1.43481 1.38465 1.56036 1.18746 0.96195 0.92829 0.95340 1.20771 0.97621 1.00520 0.98750 1.20734 0.99218 1.00275 1.03244 1.17866 0.91671 0.92442 0.93638 1.19354 1.28180 0.99325 1.04673 0.92551 1.26783 0.91755 1.02574 0.95681 1.69756 1.27440 1.34821 1.16203 0.85527 0.80285 0.78763 0.76801 1.18194 1.20440 1.17880 1.20855 0.97548 1.00663 1.00979 1.20036 0.98293 0.94707 0.99823 0.91586 0.92480 0.92792 0.90125 0.90598 0.91228 0.89591 0.91835 0.90988 0.92630 0.92200 0.88981 0.76895 0.91469 0.91495 0.85081 0.88025 0.89765 0.86760 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.99 71.98 0.65 -2.14 16 2 C 0.06 1.10 2.37 45.39 0.11 1.20 16 3 H 0.05 0.85 7.06 -2.39 -0.02 0.83 16 4 C -0.12 -1.64 6.49 31.98 0.21 -1.44 16 5 C -0.14 -1.57 6.47 31.77 0.21 -1.36 16 6 C 0.06 0.88 4.02 45.26 0.18 1.06 16 7 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 8 C -0.17 -1.98 7.79 71.98 0.56 -1.42 16 9 N -0.52 -8.81 4.93 -835.84 -4.12 -12.94 16 10 C 0.02 0.40 3.54 86.30 0.31 0.71 16 11 C 0.12 2.52 2.35 30.59 0.07 2.59 16 12 H 0.10 2.35 5.23 -2.38 -0.01 2.34 16 13 O -0.55 -12.85 11.44 -144.34 -1.65 -14.50 16 14 C 0.03 0.69 4.36 71.98 0.31 1.00 16 15 O -0.32 -11.39 10.09 -85.23 -0.86 -12.25 16 16 C 0.01 0.53 6.71 22.79 0.15 0.68 16 17 C -0.16 -6.44 8.96 22.11 0.20 -6.24 16 18 C -0.22 -10.16 7.11 22.48 0.16 -10.00 16 19 C 0.05 2.38 5.10 -21.28 -0.11 2.27 16 20 C -0.49 -27.50 9.56 23.40 0.22 -27.27 16 21 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 22 C 0.05 2.46 5.40 85.23 0.46 2.92 16 23 N -0.85 -47.42 13.93 21.82 0.30 -47.12 16 24 Si 0.96 42.84 24.52 68.60 1.68 44.52 16 25 H -0.26 -10.64 6.71 99.48 0.67 -9.98 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.25 -11.62 6.87 99.48 0.68 -10.94 16 28 C -0.18 -8.46 9.74 22.48 0.22 -8.24 16 29 C -0.11 -4.63 9.92 22.11 0.22 -4.41 16 30 H 0.07 1.57 4.27 -2.39 -0.01 1.56 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.08 1.02 8.05 -2.39 -0.02 1.01 16 35 H 0.07 0.79 7.84 -2.39 -0.02 0.78 16 36 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.06 0.76 6.87 -2.38 -0.02 0.74 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.70 6.56 -2.39 -0.02 0.69 16 40 H 0.06 0.94 5.85 -2.39 -0.01 0.92 16 41 H 0.09 1.36 7.33 -2.39 -0.02 1.34 16 42 H 0.38 6.65 9.05 -74.06 -0.67 5.98 16 43 H 0.07 1.62 7.64 -2.38 -0.02 1.60 16 44 H 0.07 1.58 7.65 -2.39 -0.02 1.56 16 45 H 0.13 4.39 6.27 -2.91 -0.02 4.37 16 46 H 0.10 4.75 4.75 -2.91 -0.01 4.74 16 47 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 48 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 49 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -63.02 370.20 -0.30 -63.32 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.22 Total: 29.04 kcal Atomic # 6 Polarization: -54.21 SS G_CDS: 4.13 Total: -50.09 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -3.82 Total: -60.05 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -2.51 Total: -26.75 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.68 Total: 44.52 kcal Total: -63.02 -0.30 -63.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610711887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.613 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds