Wall clock time and date at job start Tue Mar 31 2020 14:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.36761 * 2 1 4 4 C 1.54383 * 110.51103 * 237.57979 * 2 1 3 5 5 C 1.54265 * 105.05805 * 217.32063 * 4 2 1 6 6 C 1.54380 * 105.06112 * 0.02562 * 5 4 2 7 7 H 1.09005 * 110.40475 * 265.07081 * 6 5 4 8 8 C 1.53001 * 110.41120 * 142.63524 * 6 5 4 9 9 N 1.48560 * 104.59553 * 23.85283 * 6 5 4 10 10 C 1.46898 * 110.99935 * 200.96380 * 9 6 5 11 11 C 1.53007 * 109.47300 * 47.84597 * 10 9 6 12 12 H 1.08998 * 109.47340 * 307.07244 * 11 10 9 13 13 O 1.42903 * 109.46587 * 67.07149 * 11 10 9 14 14 C 1.52997 * 109.47119 * 187.06773 * 11 10 9 15 15 O 1.42899 * 109.46850 * 174.99947 * 14 11 10 16 16 C 1.35678 * 116.99540 * 180.02562 * 15 14 11 17 17 C 1.39320 * 119.81230 * 180.02562 * 16 15 14 18 18 C 1.36439 * 120.17948 * 179.97438 * 17 16 15 19 19 C 1.40834 * 119.81487 * 0.28017 * 18 17 16 20 20 C 1.41212 * 120.17830 * 179.72265 * 19 18 17 21 21 H 1.08000 * 120.00397 * 29.35459 * 20 19 18 22 22 C 1.39891 * 119.99685 * 209.35586 * 20 19 18 23 23 N 1.30876 * 120.00304 * 10.56024 * 22 20 19 24 24 Si 1.86800 * 119.99578 * 190.56247 * 22 20 19 25 25 H 1.48495 * 109.47519 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47034 * 120.00467 * 24 22 20 27 27 H 1.48505 * 109.47065 * 239.99688 * 24 22 20 28 28 C 1.40834 * 119.63743 * 359.42530 * 19 18 17 29 29 C 1.36434 * 119.81649 * 0.57317 * 28 19 18 30 30 H 1.08995 * 109.47414 * 297.65394 * 1 2 3 31 31 H 1.09002 * 109.46531 * 57.65474 * 1 2 3 32 32 H 1.09001 * 109.46983 * 177.64768 * 1 2 3 33 33 H 1.09000 * 110.32612 * 336.21060 * 4 2 1 34 34 H 1.09000 * 110.32589 * 98.42479 * 4 2 1 35 35 H 1.09006 * 110.32300 * 118.89571 * 5 4 2 36 36 H 1.08997 * 110.32122 * 241.00297 * 5 4 2 37 37 H 1.09003 * 109.46920 * 309.60354 * 8 6 5 38 38 H 1.08993 * 109.47250 * 69.60714 * 8 6 5 39 39 H 1.08997 * 109.46433 * 189.60728 * 8 6 5 40 40 H 1.09005 * 109.46738 * 287.85025 * 10 9 6 41 41 H 1.08992 * 109.47482 * 167.84946 * 10 9 6 42 42 H 0.96700 * 114.00230 * 59.99992 * 13 11 10 43 43 H 1.09003 * 109.46753 * 55.00468 * 14 11 10 44 44 H 1.08998 * 109.47615 * 295.00581 * 14 11 10 45 45 H 1.07996 * 119.91162 * 359.97438 * 17 16 15 46 46 H 1.08004 * 120.08785 * 180.02562 * 18 17 16 47 47 H 0.96992 * 120.00318 * 179.97438 * 23 22 20 48 48 H 1.08005 * 120.08955 * 180.30107 * 28 19 18 49 49 H 1.07992 * 119.91365 * 179.70274 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0709 -0.7752 -1.2206 5 6 3.3209 -1.5163 -0.7029 6 6 3.4297 -1.1270 0.7871 7 1 4.1064 -0.2814 0.9106 8 6 3.9079 -2.3203 1.6168 9 7 2.0476 -0.7459 1.1763 10 6 2.0533 0.1019 2.3759 11 6 3.0884 1.2162 2.2081 12 1 4.0520 0.7803 1.9446 13 8 2.6678 2.1045 1.1707 14 6 3.2208 1.9912 3.5205 15 8 4.2687 2.9553 3.4007 16 6 4.5183 3.7317 4.4851 17 6 5.5269 4.6914 4.4325 18 6 5.7839 5.4765 5.5184 19 6 5.0302 5.3106 6.6965 20 6 5.2936 6.1150 7.8268 21 1 5.6847 7.1137 7.6997 22 6 5.0480 5.6183 9.1113 23 7 4.7738 4.3499 9.2811 24 14 5.1113 6.7656 10.5841 25 1 5.4399 8.1398 10.1275 26 1 3.7910 6.7717 11.2639 27 1 6.1539 6.2970 11.5321 28 6 4.0083 4.3425 6.7390 29 6 3.7640 3.5655 5.6445 30 1 -0.3634 0.4769 0.9102 31 1 -0.3632 0.5499 -0.8683 32 1 -0.3633 -1.0268 -0.0422 33 1 1.3276 -1.4891 -1.5755 34 1 2.3439 -0.0837 -2.0177 35 1 3.1911 -2.5939 -0.8037 36 1 4.2071 -1.1898 -1.2471 37 1 3.2970 -3.1926 1.3844 38 1 4.9503 -2.5331 1.3800 39 1 3.8169 -2.0851 2.6772 40 1 2.3080 -0.5024 3.2466 41 1 1.0657 0.5414 2.5150 42 1 1.8156 2.5296 1.3383 43 1 3.4549 1.2988 4.3292 44 1 2.2819 2.5002 3.7384 45 1 6.1069 4.8141 3.5298 46 1 6.5658 6.2202 5.4759 47 1 4.6039 4.0054 10.1717 48 1 3.4226 4.2125 7.6371 49 1 2.9839 2.8193 5.6770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610711888.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:31 Heat of formation + Delta-G solvation = -61.606546 kcal Electronic energy + Delta-G solvation = -27080.560335 eV Core-core repulsion = 23393.657676 eV Total energy + Delta-G solvation = -3686.902659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.33289 -38.80396 -37.07690 -35.99695 -33.33799 -32.98651 -32.53062 -30.02354 -29.62656 -28.85156 -28.30720 -25.37948 -24.41205 -23.99660 -22.73119 -21.05881 -20.51378 -20.31649 -19.80931 -17.37689 -17.22763 -16.70275 -16.43788 -15.84933 -15.26807 -15.22151 -14.80625 -14.59743 -14.30238 -13.97597 -13.84318 -13.47172 -13.27625 -12.90834 -12.73249 -12.48928 -12.24810 -12.12607 -11.94976 -11.93294 -11.69543 -11.66635 -11.41622 -11.27956 -11.16468 -11.04052 -10.98511 -10.93533 -10.89661 -10.76260 -10.62643 -9.98978 -9.89411 -9.76114 -9.36344 -9.09929 -8.24256 -7.68786 -6.96879 -6.68904 -4.29038 2.74517 2.93484 3.08466 3.13844 3.18030 3.70288 3.85213 3.96140 4.24916 4.43366 4.55645 4.63916 4.71595 4.86483 5.01368 5.07039 5.09347 5.21018 5.32184 5.33942 5.45254 5.48808 5.55714 5.59329 5.61230 5.63137 5.64615 5.76273 5.83186 5.87248 5.92926 5.96684 6.02721 6.07149 6.15049 6.24558 6.25424 6.67377 6.78695 6.85803 6.91632 7.06186 7.27371 7.37214 7.47011 7.54356 7.87080 7.99286 8.13496 8.42331 8.63571 8.90418 8.96996 10.26763 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.002325 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.840980 B =12041.496498 C =12135.811850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.019 3.981 3 H 0.108 0.892 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.043 3.957 7 H 0.068 0.932 8 C -0.137 4.137 9 N -0.493 5.493 10 C 0.014 3.986 11 C 0.069 3.931 12 H 0.115 0.885 13 O -0.543 6.543 14 C 0.041 3.959 15 O -0.320 6.320 16 C -0.004 4.004 17 C -0.116 4.116 18 C -0.190 4.190 19 C 0.086 3.914 20 C -0.464 4.464 21 H 0.076 0.924 22 C 0.072 3.928 23 N -0.810 5.810 24 Si 0.910 3.090 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.275 1.275 28 C -0.126 4.126 29 C -0.178 4.178 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.373 0.627 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.277 0.723 48 H 0.122 0.878 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 -11.054 -14.499 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 H 0.125 0.875 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.065 4.065 7 H 0.085 0.915 8 C -0.194 4.194 9 N -0.217 5.217 10 C -0.115 4.115 11 C 0.009 3.991 12 H 0.132 0.868 13 O -0.349 6.349 14 C -0.037 4.037 15 O -0.236 6.236 16 C -0.047 4.047 17 C -0.135 4.135 18 C -0.210 4.210 19 C 0.084 3.916 20 C -0.495 4.495 21 H 0.094 0.906 22 C -0.144 4.144 23 N -0.438 5.438 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.201 1.201 28 C -0.145 4.145 29 C -0.197 4.197 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.221 0.779 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.115 0.885 46 H 0.119 0.881 47 H 0.088 0.912 48 H 0.140 0.860 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.763 -11.880 -14.617 20.013 hybrid contribution -0.140 1.116 1.279 1.703 sum -6.903 -10.764 -13.338 18.477 Atomic orbital electron populations 1.21700 0.94582 1.01817 1.01080 1.23430 0.95592 1.00206 0.89617 0.87516 1.22300 0.97194 0.98819 0.97264 1.22318 0.98026 1.00598 0.94681 1.22858 0.90693 0.97995 0.94918 0.91466 1.21720 1.00393 0.97507 0.99815 1.65629 1.17549 1.35688 1.02798 1.22875 0.99203 0.94062 0.95357 1.22867 0.99848 0.89438 0.86944 0.86773 1.86526 1.42513 1.61738 1.44110 1.23117 0.91423 0.91637 0.97510 1.85872 1.52420 1.48259 1.37015 1.18635 1.01738 0.97684 0.86676 1.19627 0.98157 0.97173 0.98559 1.20673 1.02276 1.03204 0.94832 1.17617 0.89803 0.92234 0.91992 1.19485 1.38778 1.01115 0.90085 0.90557 1.25853 0.92726 0.95140 1.00638 1.69801 1.36376 1.13225 1.24354 0.86236 0.78499 0.81200 0.80586 1.18548 1.19906 1.20087 1.20982 0.98488 0.98223 0.96816 1.20614 1.01695 1.02889 0.94489 0.93031 0.92574 0.92545 0.91633 0.91682 0.91304 0.91610 0.92116 0.92397 0.92559 0.89315 0.89964 0.77890 0.92260 0.92873 0.88504 0.88134 0.91175 0.86009 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.37 37.16 0.35 -0.78 16 2 C 0.02 0.18 2.71 -66.05 -0.18 0.00 16 3 H 0.11 1.13 4.35 -45.80 -0.20 0.93 16 4 C -0.12 -1.05 6.55 -25.34 -0.17 -1.22 16 5 C -0.12 -1.07 6.55 -25.35 -0.17 -1.23 16 6 C 0.04 0.44 2.62 -66.07 -0.17 0.26 16 7 H 0.07 0.77 5.06 -51.93 -0.26 0.51 16 8 C -0.14 -1.26 9.45 37.16 0.35 -0.91 16 9 N -0.49 -5.03 5.01 -214.33 -1.07 -6.10 16 10 C 0.01 0.15 5.12 -3.82 -0.02 0.13 16 11 C 0.07 0.84 2.81 -26.73 -0.07 0.77 16 12 H 0.11 1.53 5.47 -51.93 -0.28 1.24 16 13 O -0.54 -6.65 9.98 -40.08 -0.40 -7.05 16 14 C 0.04 0.62 4.36 37.16 0.16 0.78 16 15 O -0.32 -6.48 10.09 -23.59 -0.24 -6.72 16 16 C 0.00 -0.09 6.71 -38.78 -0.26 -0.36 16 17 C -0.12 -2.73 9.92 -39.83 -0.40 -3.12 16 18 C -0.19 -4.71 9.74 -39.25 -0.38 -5.09 16 19 C 0.09 2.29 5.54 -106.80 -0.59 1.70 16 20 C -0.46 -12.34 9.05 -37.83 -0.34 -12.68 16 21 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 22 C 0.07 1.81 5.25 -17.34 -0.09 1.72 16 23 N -0.81 -21.09 10.88 55.54 0.60 -20.48 16 24 Si 0.91 18.84 29.57 -169.99 -5.03 13.82 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 28 C -0.13 -3.25 8.60 -39.25 -0.34 -3.59 16 29 C -0.18 -4.14 8.96 -39.83 -0.36 -4.50 16 30 H 0.05 0.43 7.29 -51.93 -0.38 0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.58 7.74 -51.93 -0.40 0.18 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.55 7.97 -51.93 -0.41 0.13 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 40 H 0.09 0.89 7.65 -51.93 -0.40 0.50 16 41 H 0.08 0.76 7.20 -51.93 -0.37 0.39 16 42 H 0.37 3.48 8.98 52.13 0.47 3.95 16 43 H 0.06 0.90 7.65 -51.93 -0.40 0.50 16 44 H 0.05 0.77 7.65 -51.93 -0.40 0.38 16 45 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 46 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 47 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 48 H 0.12 3.24 6.28 -52.48 -0.33 2.91 16 49 H 0.09 1.91 6.27 -52.49 -0.33 1.58 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -28.95 378.05 -10.11 -39.06 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.00 Total: 9.91 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.68 Total: -28.13 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: -0.47 Total: -26.59 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.64 Total: -13.77 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.95 -10.11 -39.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610711888.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.542 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds