Wall clock time and date at job start Tue Mar 31 2020 13:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38131 * 119.94707 * 179.69741 * 6 5 4 8 8 C 1.38290 * 120.04957 * 0.59675 * 7 6 5 9 9 C 1.38250 * 120.11062 * 359.67603 * 8 7 6 10 10 C 1.50699 * 119.96557 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47261 * 269.97615 * 10 9 8 12 12 O 1.21286 * 119.99756 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00116 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00047 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46891 * 89.99321 * 14 13 11 16 16 H 1.07995 * 120.00586 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99670 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00102 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00000 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47120 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47161 * 119.99902 * 19 17 15 22 22 H 1.48497 * 109.47002 * 240.00272 * 19 17 15 23 23 C 1.46493 * 119.99871 * 359.97438 * 13 11 10 24 24 C 1.53003 * 109.47163 * 120.00322 * 23 13 11 25 25 C 1.53005 * 109.47106 * 240.00362 * 23 13 11 26 26 C 1.38162 * 120.05723 * 0.02573 * 9 8 7 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 35 35 H 1.07993 * 119.97567 * 180.29505 * 7 6 5 36 36 H 1.07997 * 119.94208 * 179.70200 * 8 7 6 37 37 H 1.08993 * 109.47352 * 29.97953 * 10 9 8 38 38 H 1.09001 * 109.46764 * 149.97894 * 10 9 8 39 39 H 1.08993 * 109.47024 * 209.99523 * 14 13 11 40 40 H 1.08999 * 109.46989 * 329.99748 * 14 13 11 41 41 H 0.97005 * 119.99821 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.47631 * 0.02562 * 23 13 11 43 43 H 1.09000 * 109.46887 * 59.99964 * 24 23 13 44 44 H 1.08996 * 109.47179 * 179.97438 * 24 23 13 45 45 H 1.08994 * 109.47299 * 300.00095 * 24 23 13 46 46 H 1.09004 * 109.47110 * 60.00247 * 25 23 13 47 47 H 1.09003 * 109.47133 * 180.02562 * 25 23 13 48 48 H 1.09000 * 109.47185 * 300.00183 * 25 23 13 49 49 H 1.07998 * 120.02891 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0472 -0.0013 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0029 11 6 8.1020 4.0666 -1.4238 12 8 7.3147 4.0240 -2.3454 13 7 9.4252 4.1372 -1.6706 14 6 9.9123 4.1631 -3.0520 15 6 10.0034 5.5908 -3.5258 16 1 9.7266 6.3981 -2.8640 17 6 10.4412 5.8664 -4.8038 18 7 10.7788 4.8834 -5.6096 19 14 10.5548 7.6362 -5.3909 20 1 10.1202 8.5477 -4.3022 21 1 11.9585 7.9446 -5.7646 22 1 9.6755 7.8230 -6.5728 23 6 10.3761 4.1892 -0.5575 24 6 11.3213 2.9887 -0.6377 25 6 11.1875 5.4837 -0.6399 26 6 5.4712 2.7271 -0.0018 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2529 3.7627 -0.0114 35 1 3.3742 5.9537 -0.0009 36 1 5.8324 6.0804 -0.0027 37 1 7.9160 4.9489 0.5103 38 1 8.0117 3.1716 0.5114 39 1 10.8985 3.7013 -3.0982 40 1 9.2226 3.6117 -3.6909 41 1 11.0865 5.0773 -6.5089 42 1 9.8323 4.1605 0.3867 43 1 11.8652 3.0171 -1.5819 44 1 12.0291 3.0276 0.1903 45 1 10.7433 2.0665 -0.5790 46 1 10.5141 6.3389 -0.5827 47 1 11.8954 5.5221 0.1881 48 1 11.7315 5.5120 -1.5841 49 1 6.0606 1.8222 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610905620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:31 Heat of formation + Delta-G solvation = -65.604144 kcal Electronic energy + Delta-G solvation = -26844.487039 eV Core-core repulsion = 23157.411031 eV Total energy + Delta-G solvation = -3687.076008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.20296 -39.17606 -37.55739 -35.84561 -34.17898 -32.92327 -32.27664 -30.77959 -30.08724 -28.33135 -26.86094 -26.71236 -26.20993 -23.07645 -22.47673 -22.02600 -21.31920 -20.68704 -18.28658 -17.39478 -16.64324 -16.43345 -16.40606 -16.15250 -15.87022 -15.12467 -14.63758 -14.34353 -14.24944 -13.91737 -13.82385 -13.44818 -13.25772 -13.08432 -12.72504 -12.55097 -12.40486 -12.39911 -12.27365 -11.70414 -11.60853 -11.57067 -11.43525 -11.40619 -11.31193 -11.13636 -10.89311 -10.81294 -10.74688 -10.70132 -10.51774 -10.33817 -9.97897 -9.48725 -8.98950 -8.55275 -8.38730 -8.05015 -7.58933 -5.99864 -4.02716 1.44828 1.61575 3.10725 3.31318 3.39081 3.41896 3.50835 3.78396 4.12619 4.48248 4.58345 4.59270 4.83670 4.90287 4.92648 5.07510 5.11816 5.18274 5.21090 5.30810 5.32587 5.35693 5.39251 5.49998 5.58040 5.60603 5.62822 5.70087 5.73226 5.75204 5.80295 5.91391 6.03723 6.14679 6.19938 6.30014 6.39426 6.40002 6.54998 6.62905 6.76546 6.87180 6.98893 7.17075 7.48466 7.52772 7.63073 7.97537 8.30110 8.50541 8.96772 9.17490 9.61282 11.08338 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002833 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.500105 B = 9881.101442 C =10409.134365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.318 6.318 5 C 0.128 3.872 6 C -0.214 4.214 7 C -0.081 4.081 8 C -0.140 4.140 9 C -0.014 4.014 10 C -0.107 4.107 11 C 0.507 3.493 12 O -0.532 6.532 13 N -0.594 5.594 14 C 0.246 3.754 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.132 3.868 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.137 4.137 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.080 0.920 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 -5.643 16.710 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.232 6.232 5 C 0.083 3.917 6 C -0.233 4.233 7 C -0.099 4.099 8 C -0.158 4.158 9 C -0.015 4.015 10 C -0.147 4.147 11 C 0.293 3.707 12 O -0.409 6.409 13 N -0.327 5.327 14 C 0.127 3.873 15 C -0.555 4.555 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.028 3.972 24 C -0.220 4.220 25 C -0.215 4.215 26 C -0.156 4.156 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.099 0.901 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.797 -5.903 16.011 21.330 hybrid contribution -0.004 1.228 -0.513 1.331 sum -12.801 -4.675 15.498 20.638 Atomic orbital electron populations 1.21687 0.94367 1.02443 1.02173 1.21483 0.95916 0.95029 1.03759 1.22824 0.78894 0.98585 1.01295 1.86033 1.20928 1.27278 1.88934 1.18846 0.92086 0.83877 0.96920 1.21125 0.99549 0.92525 1.10084 1.20834 0.94477 0.96806 0.97752 1.20910 0.93721 0.98017 1.03196 1.19139 0.94191 0.92394 0.95778 1.20808 0.92200 1.04473 0.97249 1.20105 0.82812 0.77861 0.89899 1.90703 1.54620 1.49494 1.46062 1.48328 1.04405 1.71039 1.08902 1.19227 0.95049 0.97453 0.75572 1.21473 1.43367 0.92416 0.98198 0.92362 1.24933 0.95602 0.97208 0.96527 1.69943 1.45053 1.31005 1.07527 0.86507 0.77455 0.85019 0.78828 1.19846 1.21069 1.21006 1.21003 0.90961 0.95655 0.89619 1.22160 0.99506 0.97665 1.02691 1.22144 0.99903 0.96663 1.02792 1.20187 0.91241 0.98055 1.06095 0.91783 0.92445 0.92340 0.90733 0.90888 0.92245 0.92106 0.85983 0.85992 0.86007 0.88323 0.88552 0.94820 0.94138 0.92902 0.90723 0.91322 0.92307 0.92914 0.92762 0.93306 0.90076 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.53 16 2 C -0.12 -0.99 6.30 -26.74 -0.17 -1.16 16 3 C 0.06 0.58 4.74 37.16 0.18 0.76 16 4 O -0.32 -4.35 10.14 -19.43 -0.20 -4.55 16 5 C 0.13 1.89 6.69 -39.22 -0.26 1.63 16 6 C -0.21 -2.85 9.04 -39.43 -0.36 -3.20 16 7 C -0.08 -1.08 10.04 -39.60 -0.40 -1.48 16 8 C -0.14 -2.10 9.70 -39.56 -0.38 -2.49 16 9 C -0.01 -0.23 4.37 -104.65 -0.46 -0.69 16 10 C -0.11 -1.63 4.14 -29.04 -0.12 -1.75 16 11 C 0.51 10.62 7.67 -10.99 -0.08 10.54 16 12 O -0.53 -13.74 15.61 5.55 0.09 -13.65 16 13 N -0.59 -12.43 2.39 -167.47 -0.40 -12.83 16 14 C 0.25 6.37 4.60 -5.19 -0.02 6.35 16 15 C -0.52 -14.36 7.83 -34.44 -0.27 -14.63 16 16 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 C 0.13 2.12 3.17 -67.93 -0.22 1.91 16 24 C -0.16 -2.36 9.17 37.16 0.34 -2.02 16 25 C -0.16 -2.55 8.47 37.16 0.31 -2.24 16 26 C -0.14 -2.16 9.64 -39.43 -0.38 -2.54 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 33 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.12 1.30 6.30 -52.48 -0.33 0.97 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 1.28 7.73 -51.93 -0.40 0.88 16 38 H 0.10 1.21 7.73 -51.93 -0.40 0.81 16 39 H 0.03 0.88 6.43 -51.93 -0.33 0.55 16 40 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.07 0.97 5.77 -51.93 -0.30 0.67 16 43 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 49 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -33.97 396.88 -9.09 -43.06 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.26 Total: 0.96 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.02 Total: -9.96 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.34 Total: -38.79 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.11 Total: -18.20 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.97 -9.09 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610905620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.542 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds