Wall clock time and date at job start Tue Mar 31 2020 13:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38131 * 119.94707 * 179.69741 * 6 5 4 8 8 C 1.38290 * 120.04957 * 0.59675 * 7 6 5 9 9 C 1.38250 * 120.11062 * 359.67603 * 8 7 6 10 10 C 1.50699 * 119.96557 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47261 * 269.97615 * 10 9 8 12 12 O 1.21286 * 119.99756 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00116 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00047 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46891 * 89.99321 * 14 13 11 16 16 H 1.07995 * 120.00586 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99670 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00102 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00000 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47120 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47161 * 119.99902 * 19 17 15 22 22 H 1.48497 * 109.47002 * 240.00272 * 19 17 15 23 23 C 1.46493 * 119.99871 * 359.97438 * 13 11 10 24 24 C 1.53003 * 109.47163 * 120.00322 * 23 13 11 25 25 C 1.53005 * 109.47106 * 240.00362 * 23 13 11 26 26 C 1.38162 * 120.05723 * 0.02573 * 9 8 7 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 35 35 H 1.07993 * 119.97567 * 180.29505 * 7 6 5 36 36 H 1.07997 * 119.94208 * 179.70200 * 8 7 6 37 37 H 1.08993 * 109.47352 * 29.97953 * 10 9 8 38 38 H 1.09001 * 109.46764 * 149.97894 * 10 9 8 39 39 H 1.08993 * 109.47024 * 209.99523 * 14 13 11 40 40 H 1.08999 * 109.46989 * 329.99748 * 14 13 11 41 41 H 0.97005 * 119.99821 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.47631 * 0.02562 * 23 13 11 43 43 H 1.09000 * 109.46887 * 59.99964 * 24 23 13 44 44 H 1.08996 * 109.47179 * 179.97438 * 24 23 13 45 45 H 1.08994 * 109.47299 * 300.00095 * 24 23 13 46 46 H 1.09004 * 109.47110 * 60.00247 * 25 23 13 47 47 H 1.09003 * 109.47133 * 180.02562 * 25 23 13 48 48 H 1.09000 * 109.47185 * 300.00183 * 25 23 13 49 49 H 1.07998 * 120.02891 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0472 -0.0013 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0029 11 6 8.1020 4.0666 -1.4238 12 8 7.3147 4.0240 -2.3454 13 7 9.4252 4.1372 -1.6706 14 6 9.9123 4.1631 -3.0520 15 6 10.0034 5.5908 -3.5258 16 1 9.7266 6.3981 -2.8640 17 6 10.4412 5.8664 -4.8038 18 7 10.7788 4.8834 -5.6096 19 14 10.5548 7.6362 -5.3909 20 1 10.1202 8.5477 -4.3022 21 1 11.9585 7.9446 -5.7646 22 1 9.6755 7.8230 -6.5728 23 6 10.3761 4.1892 -0.5575 24 6 11.3213 2.9887 -0.6377 25 6 11.1875 5.4837 -0.6399 26 6 5.4712 2.7271 -0.0018 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2529 3.7627 -0.0114 35 1 3.3742 5.9537 -0.0009 36 1 5.8324 6.0804 -0.0027 37 1 7.9160 4.9489 0.5103 38 1 8.0117 3.1716 0.5114 39 1 10.8985 3.7013 -3.0982 40 1 9.2226 3.6117 -3.6909 41 1 11.0865 5.0773 -6.5089 42 1 9.8323 4.1605 0.3867 43 1 11.8652 3.0171 -1.5819 44 1 12.0291 3.0276 0.1903 45 1 10.7433 2.0665 -0.5790 46 1 10.5141 6.3389 -0.5827 47 1 11.8954 5.5221 0.1881 48 1 11.7315 5.5120 -1.5841 49 1 6.0606 1.8222 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610905620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:29 Heat of formation + Delta-G solvation = -84.871798 kcal Electronic energy + Delta-G solvation = -26845.322547 eV Core-core repulsion = 23157.411031 eV Total energy + Delta-G solvation = -3687.911516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.34647 -40.63254 -38.65164 -37.44020 -34.98732 -34.83567 -33.55472 -32.38072 -31.14649 -29.95774 -28.20184 -27.87913 -27.30696 -24.90737 -23.60311 -23.02463 -22.59094 -21.74381 -19.70305 -18.59253 -18.56779 -18.16539 -17.23000 -17.17518 -16.97496 -16.87665 -16.23103 -15.87147 -15.13138 -15.10462 -14.83329 -14.76429 -14.72024 -14.34119 -14.18263 -13.89374 -13.48210 -13.34659 -13.27314 -13.19597 -13.05313 -12.84394 -12.82222 -12.70701 -12.53570 -12.38479 -12.21785 -12.18766 -12.13841 -12.05388 -11.69076 -11.59254 -11.52237 -11.47501 -10.61461 -10.60157 -9.75527 -9.38238 -9.12849 -8.18365 -6.29939 0.34048 0.51588 1.35098 1.37696 1.48895 1.88884 2.19611 2.32917 2.46059 2.86503 3.11434 3.66729 3.84402 3.88720 3.93593 3.99621 4.06835 4.12142 4.21763 4.28936 4.33253 4.39829 4.44432 4.48552 4.53757 4.54262 4.62630 4.76414 4.83761 4.87901 4.90559 5.03373 5.07950 5.10395 5.10791 5.15428 5.16748 5.26579 5.31203 5.35688 5.46412 5.47397 5.61111 5.65079 5.67438 5.83616 5.92810 6.13318 6.48448 6.76753 6.87906 7.33616 7.55519 8.89206 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002833 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.500105 B = 9881.101442 C =10409.134365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.051 3.949 4 O -0.335 6.335 5 C 0.116 3.884 6 C -0.214 4.214 7 C -0.082 4.082 8 C -0.158 4.158 9 C -0.032 4.032 10 C -0.092 4.092 11 C 0.498 3.502 12 O -0.593 6.593 13 N -0.598 5.598 14 C 0.264 3.736 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.286 1.286 23 C 0.123 3.877 24 C -0.157 4.157 25 C -0.152 4.152 26 C -0.160 4.160 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.025 0.975 40 H -0.012 1.012 41 H 0.264 0.736 42 H 0.119 0.881 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -4.479 19.356 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.024 4.024 4 O -0.249 6.249 5 C 0.071 3.929 6 C -0.232 4.232 7 C -0.100 4.100 8 C -0.176 4.176 9 C -0.033 4.033 10 C -0.132 4.132 11 C 0.287 3.713 12 O -0.474 6.474 13 N -0.329 5.329 14 C 0.143 3.857 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.786 3.214 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.212 1.212 23 C 0.021 3.979 24 C -0.215 4.215 25 C -0.210 4.210 26 C -0.178 4.178 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.043 0.957 40 H 0.006 0.994 41 H 0.073 0.927 42 H 0.137 0.863 43 H 0.055 0.945 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.061 0.939 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.555 -4.743 18.712 23.587 hybrid contribution 0.185 0.790 -1.313 1.544 sum -13.370 -3.953 17.399 22.296 Atomic orbital electron populations 1.21675 0.92557 1.03266 1.02745 1.21510 0.97357 0.93822 1.03318 1.23127 0.77030 1.00023 1.02178 1.86021 1.23032 1.27073 1.88819 1.19040 0.92154 0.84840 0.96901 1.21459 1.00929 0.91943 1.08910 1.21214 0.94236 0.98035 0.96491 1.21174 0.94708 0.98109 1.03612 1.19271 0.94543 0.92766 0.96690 1.20782 0.92080 1.07259 0.93037 1.21155 0.82084 0.76109 0.91933 1.90665 1.56091 1.52077 1.48543 1.48373 1.05704 1.70675 1.08184 1.18624 0.93115 0.95843 0.78134 1.21684 1.42770 0.93028 0.98396 0.92668 1.25831 0.95322 1.01596 0.96777 1.70070 1.46032 1.33265 1.07946 0.85456 0.77951 0.79821 0.78145 1.18923 1.19619 1.21195 1.21456 0.90808 0.96246 0.89403 1.22129 0.99686 0.97136 1.02574 1.22085 1.00160 0.96350 1.02401 1.20351 0.92134 0.98164 1.07197 0.90880 0.91463 0.92160 0.91764 0.90804 0.90552 0.91861 0.83333 0.83146 0.85271 0.85371 0.85471 0.95730 0.99409 0.92712 0.86325 0.94495 0.88394 0.92540 0.93612 0.89132 0.93949 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.84 6.30 30.59 0.19 -1.65 16 3 C 0.05 0.94 4.74 71.98 0.34 1.28 16 4 O -0.33 -9.07 10.14 -92.43 -0.94 -10.01 16 5 C 0.12 3.38 6.69 22.50 0.15 3.53 16 6 C -0.21 -5.34 9.04 22.37 0.20 -5.14 16 7 C -0.08 -2.05 10.04 22.26 0.22 -1.83 16 8 C -0.16 -4.55 9.70 22.29 0.22 -4.33 16 9 C -0.03 -0.99 4.37 -19.88 -0.09 -1.08 16 10 C -0.09 -2.64 4.14 29.10 0.12 -2.52 16 11 C 0.50 21.10 7.67 87.66 0.67 21.77 16 12 O -0.59 -31.98 15.61 -3.05 -0.05 -32.03 16 13 N -0.60 -25.36 2.39 -802.15 -1.91 -27.28 16 14 C 0.26 14.41 4.60 85.63 0.39 14.80 16 15 C -0.52 -29.92 7.83 25.60 0.20 -29.72 16 16 H 0.06 3.14 7.62 -2.91 -0.02 3.12 16 17 C 0.00 0.16 5.46 84.66 0.46 0.62 16 18 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 19 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 C 0.12 3.73 3.17 45.00 0.14 3.87 16 24 C -0.16 -4.32 9.17 71.98 0.66 -3.66 16 25 C -0.15 -4.68 8.47 71.98 0.61 -4.07 16 26 C -0.16 -5.04 9.64 22.36 0.22 -4.82 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.14 7.68 -2.39 -0.02 1.12 16 33 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 34 H 0.15 2.79 6.30 -2.91 -0.02 2.77 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.13 2.90 7.73 -2.39 -0.02 2.89 16 38 H 0.13 2.83 7.73 -2.39 -0.02 2.81 16 39 H 0.02 1.37 6.43 -2.39 -0.02 1.36 16 40 H -0.01 -0.79 7.42 -2.39 -0.02 -0.80 16 41 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 42 H 0.12 2.59 5.77 -2.39 -0.01 2.58 16 43 H 0.04 1.24 6.66 -2.39 -0.02 1.22 16 44 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.04 1.63 6.92 -2.39 -0.02 1.61 16 49 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -79.22 396.88 5.75 -73.46 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.91 Total: 19.09 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.43 Total: -13.71 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -1.63 Total: -84.55 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.98 Total: -42.04 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -79.22 5.75 -73.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610905620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.407 kcal (2) G-P(sol) polarization free energy of solvation -79.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds