Wall clock time and date at job start Tue Mar 31 2020 12:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47250 * 2 1 4 4 H 1.08997 * 109.46981 * 304.99837 * 3 2 1 5 5 C 1.52998 * 109.46797 * 184.99593 * 3 2 1 6 6 O 1.42897 * 109.47076 * 64.99796 * 3 2 1 7 7 C 1.35992 * 116.99660 * 203.06816 * 6 3 2 8 8 C 1.38565 * 120.07591 * 357.76846 * 7 6 3 9 9 C 1.38242 * 119.99800 * 180.25461 * 8 7 6 10 10 C 1.50698 * 119.92433 * 179.76665 * 9 8 7 11 11 N 1.46497 * 109.47269 * 269.72514 * 10 9 8 12 12 C 1.36940 * 120.00251 * 90.00302 * 11 10 9 13 13 H 1.08001 * 119.99301 * 304.65626 * 12 11 10 14 14 C 1.38812 * 120.00431 * 124.65474 * 12 11 10 15 15 N 1.31618 * 120.00081 * 158.13263 * 14 12 11 16 16 Si 1.86802 * 119.99925 * 338.12717 * 14 12 11 17 17 H 1.48495 * 109.47181 * 94.69149 * 16 14 12 18 18 H 1.48499 * 109.47338 * 214.69370 * 16 14 12 19 19 H 1.48500 * 109.47232 * 334.69511 * 16 14 12 20 20 C 1.46501 * 120.00171 * 269.72270 * 11 10 9 21 21 C 1.53004 * 117.49841 * 181.73577 * 20 11 10 22 22 C 1.53005 * 117.49718 * 113.07569 * 20 11 10 23 23 C 1.38256 * 120.14776 * 359.49403 * 9 8 7 24 24 C 1.38238 * 120.14494 * 0.23167 * 23 9 8 25 25 C 1.38566 * 120.00186 * 0.02562 * 24 23 9 26 26 O 1.35992 * 120.07201 * 179.97438 * 25 24 23 27 27 C 1.42902 * 117.00181 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46960 * 60.00152 * 1 2 3 29 29 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47219 * 300.00544 * 1 2 3 31 31 H 1.08992 * 109.47685 * 239.99630 * 2 1 3 32 32 H 1.09002 * 109.46960 * 119.99848 * 2 1 3 33 33 H 1.08991 * 109.47286 * 299.99523 * 5 3 2 34 34 H 1.08996 * 109.47287 * 60.00301 * 5 3 2 35 35 H 1.09007 * 109.46479 * 179.97438 * 5 3 2 36 36 H 1.08001 * 119.99930 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.47125 * 149.73015 * 10 9 8 38 38 H 1.09004 * 109.47417 * 29.72647 * 10 9 8 39 39 H 0.96999 * 119.99691 * 180.02562 * 15 14 12 40 40 H 1.09000 * 115.55053 * 327.41365 * 20 11 10 41 41 H 1.08994 * 117.49885 * 0.02562 * 21 20 11 42 42 H 1.09007 * 117.49592 * 145.02580 * 21 20 11 43 43 H 1.08995 * 117.49622 * 214.98019 * 22 20 11 44 44 H 1.09004 * 117.49938 * 359.97438 * 22 20 11 45 45 H 1.08001 * 119.92377 * 180.25378 * 23 9 8 46 46 H 1.08001 * 119.99476 * 180.02562 * 24 23 9 47 47 H 1.09007 * 109.46742 * 299.99565 * 27 26 25 48 48 H 1.08997 * 109.47389 * 59.99569 * 27 26 25 49 49 H 1.09001 * 109.47190 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1256 6 8 1.6620 2.0814 1.2210 7 6 1.5914 3.4395 1.2110 8 6 1.9244 4.1437 0.0651 9 6 1.8572 5.5245 0.0584 10 6 2.2247 6.2890 -1.1872 11 7 3.6542 6.6084 -1.1602 12 6 4.5608 5.7376 -1.7034 13 1 4.5886 4.7103 -1.3712 14 6 5.4438 6.1752 -2.6809 15 7 6.5634 5.5182 -2.8981 16 14 5.0431 7.6964 -3.6883 17 1 5.6854 8.8835 -3.0690 18 1 5.5538 7.5226 -5.0718 19 1 3.5716 7.8925 -3.7248 20 6 4.1134 7.8623 -0.5576 21 6 5.6143 8.1569 -0.5967 22 6 4.9444 7.7676 0.7236 23 6 1.4481 6.2053 1.1900 24 6 1.1090 5.5085 2.3348 25 6 1.1793 4.1247 2.3500 26 8 0.8466 3.4378 3.4755 27 6 0.4335 4.2070 4.6068 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9994 0.9053 0.7162 34 1 3.8533 0.9569 -1.0570 35 1 3.9281 2.4720 -0.1261 36 1 2.2400 3.6141 -0.8217 37 1 1.6470 7.2123 -1.2306 38 1 2.0048 5.6811 -2.0649 39 1 7.1806 5.8242 -3.5810 40 1 3.4318 8.7075 -0.6540 41 1 6.2599 7.4180 -1.0711 42 1 5.9202 9.1960 -0.7185 43 1 4.8100 8.5507 1.4697 44 1 5.1492 6.7723 1.1183 45 1 1.3929 7.2838 1.1795 46 1 0.7894 6.0427 3.2173 47 1 1.2384 4.8804 4.9017 48 1 -0.4505 4.7893 4.3470 49 1 0.1981 3.5382 5.4346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611264943.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:47 Heat of formation + Delta-G solvation = -5.180187 kcal Electronic energy + Delta-G solvation = -28250.716012 eV Core-core repulsion = 24566.260184 eV Total energy + Delta-G solvation = -3684.455828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.30323 -38.52269 -37.61642 -36.46311 -34.06017 -32.98304 -31.90039 -30.03207 -29.75990 -29.27161 -27.32968 -25.29165 -23.86410 -23.35556 -22.58504 -21.41943 -20.88697 -20.33312 -19.72567 -18.20768 -16.97110 -16.68118 -16.17969 -15.65619 -15.21998 -14.86341 -14.67629 -14.48337 -14.31862 -14.08220 -13.74896 -13.63306 -13.23618 -13.07696 -12.98282 -12.75379 -12.17369 -12.06033 -11.90128 -11.76959 -11.60217 -11.56086 -11.30132 -11.07136 -10.88672 -10.80889 -10.74582 -10.66384 -10.41925 -10.36871 -10.29237 -10.26375 -9.83834 -9.50264 -9.17731 -8.40108 -8.18254 -7.35015 -6.45497 -6.07232 -3.70601 1.74719 1.90681 3.37543 3.46475 3.49740 3.52359 3.54030 4.13940 4.51737 4.80720 4.90027 5.01634 5.02720 5.07781 5.14762 5.20646 5.22671 5.31556 5.33740 5.45259 5.49447 5.53018 5.64959 5.70534 5.74486 5.88259 5.90289 5.93385 5.95864 5.99452 6.09390 6.13270 6.14876 6.19415 6.28772 6.31824 6.52610 6.54555 6.58234 6.63134 6.64050 6.75849 7.07864 7.13346 7.23635 7.38919 7.40428 7.96864 8.05487 8.50848 9.00314 9.62004 10.13364 11.02865 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.004710 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.864933 B = 5943.793494 C = 7382.669089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.081 3.919 4 H 0.072 0.928 5 C -0.181 4.181 6 O -0.303 6.303 7 C 0.101 3.899 8 C -0.153 4.153 9 C -0.070 4.070 10 C 0.182 3.818 11 N -0.563 5.563 12 C -0.285 4.285 13 H 0.069 0.931 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.876 3.124 17 H -0.275 1.275 18 H -0.302 1.302 19 H -0.270 1.270 20 C 0.112 3.888 21 C -0.195 4.195 22 C -0.210 4.210 23 C -0.111 4.111 24 C -0.175 4.175 25 C 0.077 3.923 26 O -0.312 6.312 27 C 0.030 3.970 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.051 0.949 48 H 0.050 0.950 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -3.730 8.666 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.025 3.975 4 H 0.090 0.910 5 C -0.239 4.239 6 O -0.217 6.217 7 C 0.056 3.944 8 C -0.173 4.173 9 C -0.073 4.073 10 C 0.056 3.944 11 N -0.282 5.282 12 C -0.413 4.413 13 H 0.086 0.914 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.703 3.297 17 H -0.201 1.201 18 H -0.230 1.230 19 H -0.194 1.194 20 C 0.004 3.996 21 C -0.233 4.233 22 C -0.251 4.251 23 C -0.130 4.130 24 C -0.194 4.194 25 C 0.032 3.968 26 O -0.226 6.226 27 C -0.065 4.065 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.136 0.864 46 H 0.142 0.858 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.939 -4.114 8.699 15.334 hybrid contribution 0.206 1.222 -0.517 1.343 sum -11.733 -2.892 8.182 14.593 Atomic orbital electron populations 1.21749 0.95429 1.01371 1.02391 1.21596 0.96535 0.94342 1.02873 1.22453 0.95346 0.93427 0.86255 0.90990 1.22373 0.94840 1.04262 1.02381 1.86133 1.84199 1.15914 1.35481 1.18191 1.00904 0.82786 0.92513 1.21059 1.04201 0.94868 0.97143 1.20668 0.95415 0.93215 0.98015 1.19961 0.85810 0.96271 0.92325 1.43494 1.00725 1.19140 1.64839 1.18465 1.12373 0.93790 1.16692 0.91397 1.25808 0.95363 0.96817 0.95952 1.69935 1.08390 1.41430 1.33015 0.86819 0.79368 0.84297 0.79194 1.20115 1.22968 1.19442 1.21278 0.91618 0.90058 0.96626 1.23449 0.97469 1.00922 1.01492 1.23312 1.08897 1.01299 0.91546 1.20661 1.00722 0.99368 0.92236 1.20912 1.06852 0.91676 0.99922 1.18120 1.02855 0.89928 0.85873 1.86124 1.82133 1.34852 1.19525 1.22942 0.99065 0.97060 0.87468 0.92877 0.92848 0.91951 0.90261 0.91050 0.92006 0.91176 0.90732 0.84624 0.93552 0.91697 0.92553 0.89814 0.85999 0.91028 0.91325 0.89434 0.86383 0.85758 0.93085 0.93188 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.81 37.16 0.36 -1.30 16 2 C -0.12 -1.35 5.64 -26.73 -0.15 -1.50 16 3 C 0.08 1.18 2.24 -26.73 -0.06 1.12 16 4 H 0.07 1.04 6.27 -51.93 -0.33 0.71 16 5 C -0.18 -2.75 9.16 37.16 0.34 -2.41 16 6 O -0.30 -5.15 9.13 -34.22 -0.31 -5.46 16 7 C 0.10 1.80 6.59 -39.12 -0.26 1.55 16 8 C -0.15 -2.79 7.85 -39.46 -0.31 -3.10 16 9 C -0.07 -1.28 5.46 -104.61 -0.57 -1.85 16 10 C 0.18 3.53 5.83 -5.20 -0.03 3.50 16 11 N -0.56 -12.76 2.00 -167.02 -0.33 -13.09 16 12 C -0.28 -7.49 9.10 -15.06 -0.14 -7.63 16 13 H 0.07 1.98 8.06 -52.49 -0.42 1.55 16 14 C 0.06 1.73 3.45 -17.43 -0.06 1.67 16 15 N -0.89 -25.65 13.97 55.49 0.78 -24.88 16 16 Si 0.88 21.40 25.51 -169.99 -4.34 17.06 16 17 H -0.28 -6.56 6.48 56.52 0.37 -6.20 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 C 0.11 2.36 5.23 -67.93 -0.36 2.00 16 21 C -0.20 -4.29 7.20 -26.69 -0.19 -4.48 16 22 C -0.21 -4.25 10.39 -26.69 -0.28 -4.53 16 23 C -0.11 -1.81 9.69 -39.57 -0.38 -2.20 16 24 C -0.17 -2.68 9.04 -39.46 -0.36 -3.04 16 25 C 0.08 1.30 6.70 -39.12 -0.26 1.04 16 26 O -0.31 -4.92 10.28 -34.22 -0.35 -5.28 16 27 C 0.03 0.32 9.81 101.05 0.99 1.31 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.36 6.92 -51.92 -0.36 1.00 16 36 H 0.14 2.48 5.47 -52.49 -0.29 2.19 16 37 H 0.05 0.81 8.01 -51.93 -0.42 0.39 16 38 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.12 3.12 5.33 -51.93 -0.28 2.84 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 45 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 47 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 48 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -29.95 388.22 -8.70 -38.64 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.28 Total: 6.99 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.71 Total: -19.84 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.44 Total: -37.97 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.66 Total: -10.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.34 Total: 17.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.95 -8.70 -38.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611264943.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.465 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds