Wall clock time and date at job start Tue Mar 31 2020 12:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47617 * 275.09134 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99846 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47239 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47239 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47025 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.46993 * 179.97438 * 20 19 18 22 22 C 1.38268 * 119.94413 * 269.72487 * 21 20 19 23 23 C 1.38143 * 120.05591 * 179.72458 * 22 21 20 24 24 C 1.38728 * 119.94609 * 0.57158 * 23 22 21 25 25 O 1.35897 * 120.06066 * 179.68224 * 24 23 22 26 26 C 1.38734 * 119.88461 * 359.70322 * 24 23 22 27 27 C 1.38144 * 119.94725 * 359.97438 * 26 24 23 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 32 32 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 33 33 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 35 35 H 1.09008 * 109.46634 * 299.99370 * 16 14 13 36 36 H 1.08997 * 109.47717 * 59.99546 * 16 14 13 37 37 H 1.08995 * 109.47052 * 299.99367 * 17 16 14 38 38 H 1.08997 * 109.47188 * 59.99202 * 17 16 14 39 39 H 1.09008 * 109.46758 * 299.99470 * 18 17 16 40 40 H 1.08995 * 109.47110 * 59.99269 * 18 17 16 41 41 H 1.09007 * 109.46397 * 299.99764 * 19 18 17 42 42 H 1.08997 * 109.47188 * 59.99398 * 19 18 17 43 43 H 1.09008 * 109.46932 * 299.99445 * 20 19 18 44 44 H 1.08997 * 109.47562 * 59.99709 * 20 19 18 45 45 H 1.08004 * 119.96940 * 359.97438 * 22 21 20 46 46 H 1.08003 * 120.02545 * 180.25087 * 23 22 21 47 47 H 0.96704 * 113.99883 * 270.02169 * 25 24 23 48 48 H 1.08003 * 120.02771 * 179.97438 * 26 24 23 49 49 H 1.08003 * 119.97224 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 6 -1.3555 3.8850 -2.5665 18 6 -1.7464 4.5641 -3.8807 19 6 -3.1662 5.1221 -3.7638 20 6 -3.5567 5.8018 -5.0777 21 6 -4.9554 6.3508 -4.9629 22 6 -6.0363 5.5667 -5.3214 23 6 -7.3198 6.0656 -5.2117 24 6 -7.5231 7.3588 -4.7525 25 8 -8.7844 7.8543 -4.6497 26 6 -6.4366 8.1456 -4.3988 27 6 -5.1554 7.6397 -4.5040 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8280 1.5271 2.3972 34 1 2.2931 2.1156 -1.9978 35 1 0.7582 4.1421 -2.8918 36 1 0.1042 2.5999 -3.4936 37 1 -2.0494 3.0708 -2.3576 38 1 -1.3948 4.6128 -1.7560 39 1 -1.0524 5.3785 -4.0892 40 1 -1.7070 3.8367 -4.6913 41 1 -3.8604 4.3080 -3.5550 42 1 -3.2051 5.8497 -2.9532 43 1 -2.8624 6.6159 -5.2860 44 1 -3.5177 5.0746 -5.8887 45 1 -5.8772 4.5617 -5.6838 46 1 -8.1639 5.4512 -5.4881 47 1 -9.0983 8.2996 -5.4487 48 1 -6.5922 9.1528 -4.0414 49 1 -4.3093 8.2517 -4.2283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613051166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:54 Heat of formation + Delta-G solvation = -97.326633 kcal Electronic energy + Delta-G solvation = -25429.350974 eV Core-core repulsion = 21740.899376 eV Total energy + Delta-G solvation = -3688.451598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.14678 -39.19416 -37.61932 -35.98730 -35.04681 -32.89642 -32.31732 -31.42870 -31.35952 -29.67190 -27.62590 -26.27343 -23.40562 -23.18139 -22.62432 -21.37172 -21.07218 -20.05736 -19.46399 -18.79759 -17.25731 -16.40012 -16.25479 -15.86886 -15.79521 -15.55483 -15.44638 -14.75972 -14.31968 -14.08475 -13.86574 -13.74133 -13.55784 -13.26069 -12.78571 -12.68172 -12.52446 -12.40535 -12.20425 -11.90115 -11.83728 -11.71878 -11.59493 -11.06423 -10.98623 -10.94278 -10.88238 -10.80138 -10.66348 -10.62073 -10.50395 -9.94832 -9.84838 -9.35917 -9.19317 -9.01552 -8.79227 -8.69513 -7.95461 -6.22564 -4.25786 0.85128 0.98326 3.23664 3.26656 3.34726 3.37963 3.42692 3.83037 4.05471 4.33581 4.43928 4.45265 4.61398 4.79276 4.87367 5.00393 5.02594 5.06137 5.13851 5.26564 5.30326 5.42517 5.49138 5.52435 5.60443 5.64604 5.73728 5.82440 5.88762 5.92036 5.99165 6.05389 6.07246 6.10154 6.10683 6.26228 6.27993 6.34258 6.44710 6.46250 6.67323 6.80097 7.00737 7.03246 7.25106 7.31031 7.39613 7.60817 8.17135 8.62041 8.78242 9.06838 9.40147 10.89203 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025516 B = 0.001766 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.079146 B =15854.889766 C =15924.841757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.237 3.763 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.259 1.259 12 H -0.286 1.286 13 N -0.706 5.706 14 C 0.498 3.502 15 O -0.556 6.556 16 C -0.143 4.143 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.086 4.086 22 C -0.102 4.102 23 C -0.143 4.143 24 C 0.094 3.906 25 O -0.501 6.501 26 C -0.143 4.143 27 C -0.101 4.101 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.267 0.733 34 H 0.392 0.608 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.388 0.612 48 H 0.127 0.873 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.606 10.896 -17.631 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.134 3.866 4 H 0.067 0.933 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.183 1.183 12 H -0.212 1.212 13 N -0.354 5.354 14 C 0.283 3.717 15 O -0.436 6.436 16 C -0.183 4.183 17 C -0.140 4.140 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.162 4.162 24 C 0.050 3.950 25 O -0.311 6.311 26 C -0.161 4.161 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.225 0.775 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.244 0.756 48 H 0.145 0.855 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.950 10.626 -16.243 29.301 hybrid contribution -0.139 0.339 0.059 0.371 sum -22.090 10.965 -16.184 29.497 Atomic orbital electron populations 1.21897 0.97436 0.98732 1.02048 1.22087 0.93668 0.99596 1.01123 1.19116 0.95395 0.89011 0.83050 0.93337 1.21028 0.88756 1.52183 0.94912 0.90419 1.24925 0.94873 0.93689 0.98873 1.69882 1.09613 1.48819 1.24331 0.86915 0.81292 0.79473 0.82357 1.19928 1.18306 1.21243 1.46560 1.14719 1.56084 1.18039 1.20581 0.82525 0.79106 0.89470 1.90649 1.50969 1.60197 1.41750 1.21703 0.98686 1.01142 0.96765 1.21302 0.95055 1.00602 0.97042 1.21636 0.95998 1.00041 0.98017 1.21581 0.96847 1.00182 0.96526 1.20662 0.92078 1.00403 0.98751 1.20019 0.95870 0.94069 0.98611 1.20977 0.91548 0.99784 0.99654 1.21426 0.97759 0.95859 1.01113 1.18490 0.84000 0.92513 0.99975 1.84843 1.27940 1.76679 1.41616 1.21434 0.92272 1.00437 1.02005 1.20982 0.96623 0.95344 0.98994 0.93117 0.95209 0.93164 0.93070 0.92217 0.92291 0.77460 0.89511 0.89671 0.91398 0.91341 0.91932 0.91982 0.91730 0.91703 0.90843 0.90872 0.85532 0.85507 0.75626 0.85497 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.53 37.16 0.32 -2.58 16 2 C -0.13 -2.75 5.54 -26.73 -0.15 -2.90 16 3 C 0.24 5.60 1.82 -69.08 -0.13 5.47 16 4 H 0.05 1.26 4.92 -51.93 -0.26 1.01 16 5 C -0.53 -14.24 9.05 -34.44 -0.31 -14.55 16 6 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 9 Si 0.87 21.70 26.69 -169.99 -4.54 17.16 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.26 -6.33 6.88 56.52 0.39 -5.94 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.71 -13.90 5.03 -54.93 -0.28 -14.17 16 14 C 0.50 9.15 6.43 -10.98 -0.07 9.08 16 15 O -0.56 -12.14 13.12 5.55 0.07 -12.07 16 16 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 17 C -0.10 -1.24 4.50 -26.73 -0.12 -1.36 16 18 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 19 C -0.11 -0.96 5.20 -26.73 -0.14 -1.10 16 20 C -0.08 -0.58 5.34 -27.89 -0.15 -0.73 16 21 C -0.09 -0.69 5.13 -104.60 -0.54 -1.23 16 22 C -0.10 -0.80 9.69 -39.60 -0.38 -1.18 16 23 C -0.14 -1.15 9.99 -39.44 -0.39 -1.55 16 24 C 0.09 0.80 6.70 -39.22 -0.26 0.54 16 25 O -0.50 -3.79 13.50 -19.42 -0.26 -4.06 16 26 C -0.14 -1.16 9.99 -39.43 -0.39 -1.56 16 27 C -0.10 -0.81 9.69 -39.61 -0.38 -1.19 16 28 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.36 7.90 -51.93 -0.41 0.95 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.39 6.80 8.59 -40.82 -0.35 6.45 16 35 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.47 8.09 -51.92 -0.42 0.05 16 44 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 47 H 0.39 0.99 9.06 45.56 0.41 1.41 16 48 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 49 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -32.99 397.48 -9.37 -42.36 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.63 Total: 6.11 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.50 Total: -15.87 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.50 Total: -39.63 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.19 Total: -16.12 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.54 Total: 17.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.99 -9.37 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613051166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.967 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds