Wall clock time and date at job start Tue Mar 31 2020 12:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47617 * 275.09134 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99846 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47239 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47239 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47025 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.46993 * 179.97438 * 20 19 18 22 22 C 1.38268 * 119.94413 * 269.72487 * 21 20 19 23 23 C 1.38143 * 120.05591 * 179.72458 * 22 21 20 24 24 C 1.38728 * 119.94609 * 0.57158 * 23 22 21 25 25 O 1.35897 * 120.06066 * 179.68224 * 24 23 22 26 26 C 1.38734 * 119.88461 * 359.70322 * 24 23 22 27 27 C 1.38144 * 119.94725 * 359.97438 * 26 24 23 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 32 32 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 33 33 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 35 35 H 1.09008 * 109.46634 * 299.99370 * 16 14 13 36 36 H 1.08997 * 109.47717 * 59.99546 * 16 14 13 37 37 H 1.08995 * 109.47052 * 299.99367 * 17 16 14 38 38 H 1.08997 * 109.47188 * 59.99202 * 17 16 14 39 39 H 1.09008 * 109.46758 * 299.99470 * 18 17 16 40 40 H 1.08995 * 109.47110 * 59.99269 * 18 17 16 41 41 H 1.09007 * 109.46397 * 299.99764 * 19 18 17 42 42 H 1.08997 * 109.47188 * 59.99398 * 19 18 17 43 43 H 1.09008 * 109.46932 * 299.99445 * 20 19 18 44 44 H 1.08997 * 109.47562 * 59.99709 * 20 19 18 45 45 H 1.08004 * 119.96940 * 359.97438 * 22 21 20 46 46 H 1.08003 * 120.02545 * 180.25087 * 23 22 21 47 47 H 0.96704 * 113.99883 * 270.02169 * 25 24 23 48 48 H 1.08003 * 120.02771 * 179.97438 * 26 24 23 49 49 H 1.08003 * 119.97224 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 6 -1.3555 3.8850 -2.5665 18 6 -1.7464 4.5641 -3.8807 19 6 -3.1662 5.1221 -3.7638 20 6 -3.5567 5.8018 -5.0777 21 6 -4.9554 6.3508 -4.9629 22 6 -6.0363 5.5667 -5.3214 23 6 -7.3198 6.0656 -5.2117 24 6 -7.5231 7.3588 -4.7525 25 8 -8.7844 7.8543 -4.6497 26 6 -6.4366 8.1456 -4.3988 27 6 -5.1554 7.6397 -4.5040 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8280 1.5271 2.3972 34 1 2.2931 2.1156 -1.9978 35 1 0.7582 4.1421 -2.8918 36 1 0.1042 2.5999 -3.4936 37 1 -2.0494 3.0708 -2.3576 38 1 -1.3948 4.6128 -1.7560 39 1 -1.0524 5.3785 -4.0892 40 1 -1.7070 3.8367 -4.6913 41 1 -3.8604 4.3080 -3.5550 42 1 -3.2051 5.8497 -2.9532 43 1 -2.8624 6.6159 -5.2860 44 1 -3.5177 5.0746 -5.8887 45 1 -5.8772 4.5617 -5.6838 46 1 -8.1639 5.4512 -5.4881 47 1 -9.0983 8.2996 -5.4487 48 1 -6.5922 9.1528 -4.0414 49 1 -4.3093 8.2517 -4.2283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613051166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:52 Heat of formation + Delta-G solvation = -118.191061 kcal Electronic energy + Delta-G solvation = -25430.255724 eV Core-core repulsion = 21740.899376 eV Total energy + Delta-G solvation = -3689.356348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.75614 -40.66747 -38.20750 -37.19351 -36.35972 -34.37266 -33.81144 -32.94488 -31.91875 -30.54948 -29.37563 -27.17725 -24.80749 -23.94888 -23.74509 -22.27747 -21.73124 -21.52118 -21.08461 -19.34690 -19.14244 -17.52965 -17.31970 -17.05806 -16.75898 -16.66949 -16.16012 -15.97740 -15.86995 -15.03975 -14.80545 -14.78221 -14.58823 -14.34820 -14.31677 -13.81238 -13.77472 -13.65322 -13.28378 -13.10190 -13.03453 -12.91139 -12.61664 -12.47571 -12.44749 -12.34031 -11.87216 -11.84553 -11.73746 -11.65754 -11.59529 -11.38078 -11.28143 -11.19314 -10.85030 -10.53727 -9.93565 -9.63870 -9.37548 -8.39122 -6.44020 0.28015 0.40677 1.27446 1.32059 1.43109 1.92591 2.26283 2.58926 2.69142 3.04009 3.32940 3.80331 3.91083 3.98672 4.06581 4.11798 4.15911 4.31896 4.34912 4.38387 4.42386 4.47259 4.56365 4.58777 4.66754 4.77874 4.81478 4.86117 4.92463 5.00387 5.05370 5.07630 5.10194 5.12708 5.16432 5.27211 5.29283 5.38576 5.39728 5.43848 5.47862 5.47952 5.56567 5.59358 5.73002 5.83574 5.94387 6.15795 6.61020 6.85087 7.01497 7.22231 7.60226 8.75871 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025516 B = 0.001766 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.079146 B =15854.889766 C =15924.841757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.241 3.759 4 H 0.025 0.975 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.930 5.930 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.256 1.256 12 H -0.278 1.278 13 N -0.707 5.707 14 C 0.493 3.507 15 O -0.592 6.592 16 C -0.131 4.131 17 C -0.099 4.099 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.097 4.097 22 C -0.108 4.108 23 C -0.155 4.155 24 C 0.084 3.916 25 O -0.514 6.514 26 C -0.156 4.156 27 C -0.109 4.109 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.269 0.731 34 H 0.405 0.595 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.141 0.859 46 H 0.137 0.863 47 H 0.408 0.592 48 H 0.136 0.864 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.789 11.063 -19.363 31.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.137 3.863 4 H 0.043 0.957 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.180 1.180 12 H -0.204 1.204 13 N -0.357 5.357 14 C 0.281 3.719 15 O -0.474 6.474 16 C -0.171 4.171 17 C -0.137 4.137 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.112 4.112 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.174 4.174 24 C 0.040 3.960 25 O -0.327 6.327 26 C -0.174 4.174 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.267 0.733 48 H 0.154 0.846 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.147 10.807 -18.017 31.260 hybrid contribution 0.182 0.311 0.532 0.642 sum -22.965 11.118 -17.485 30.931 Atomic orbital electron populations 1.21760 0.95833 1.00184 1.01174 1.21998 0.94999 0.98174 1.01105 1.18837 0.93067 0.90193 0.84248 0.95701 1.21249 0.90421 1.50701 0.94014 0.92513 1.25569 0.95722 0.94008 1.01447 1.69975 1.11012 1.50872 1.25046 0.86102 0.79991 0.79108 0.79894 1.20220 1.17992 1.20361 1.46360 1.15865 1.56393 1.17059 1.21535 0.81265 0.78132 0.90975 1.90638 1.51844 1.61321 1.43615 1.21732 0.99306 1.01988 0.94053 1.21270 0.94350 0.99766 0.98323 1.21558 0.96221 1.00524 0.96375 1.21524 0.96595 0.99700 0.97055 1.20615 0.91620 1.00832 0.98117 1.20206 0.96478 0.94211 0.98769 1.21214 0.91482 1.00453 0.99450 1.21629 0.98378 0.95987 1.01359 1.18672 0.84366 0.92902 1.00069 1.84781 1.27662 1.76988 1.43294 1.21627 0.92454 1.01032 1.02323 1.21208 0.96991 0.95696 0.98850 0.92878 0.92531 0.95126 0.91867 0.93470 0.92123 0.76018 0.87337 0.86666 0.92922 0.93486 0.90688 0.90293 0.92597 0.92894 0.89893 0.89672 0.84152 0.84516 0.73327 0.84634 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.53 71.98 0.61 -4.50 16 2 C -0.12 -5.28 5.54 30.59 0.17 -5.11 16 3 C 0.24 11.28 1.82 44.25 0.08 11.36 16 4 H 0.03 1.30 4.92 -2.39 -0.01 1.29 16 5 C -0.53 -28.35 9.05 25.60 0.23 -28.12 16 6 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 7 C 0.03 1.85 5.47 84.65 0.46 2.32 16 8 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 9 Si 0.92 45.15 26.69 68.60 1.83 46.98 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.26 -12.26 6.88 99.48 0.68 -11.57 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.71 -26.96 5.03 -446.08 -2.24 -29.20 16 14 C 0.49 17.37 6.43 87.66 0.56 17.93 16 15 O -0.59 -25.54 13.12 -3.05 -0.04 -25.58 16 16 C -0.13 -3.00 5.70 29.85 0.17 -2.83 16 17 C -0.10 -2.21 4.50 30.60 0.14 -2.07 16 18 C -0.11 -1.61 5.21 30.60 0.16 -1.45 16 19 C -0.11 -1.67 5.20 30.59 0.16 -1.51 16 20 C -0.07 -0.88 5.34 29.85 0.16 -0.72 16 21 C -0.10 -1.41 5.13 -19.85 -0.10 -1.51 16 22 C -0.11 -1.56 9.69 22.25 0.22 -1.34 16 23 C -0.16 -2.36 9.99 22.36 0.22 -2.14 16 24 C 0.08 1.37 6.70 22.51 0.15 1.52 16 25 O -0.51 -7.40 13.50 -92.39 -1.25 -8.65 16 26 C -0.16 -2.43 9.99 22.37 0.22 -2.21 16 27 C -0.11 -1.63 9.69 22.25 0.22 -1.41 16 28 H 0.05 2.01 5.63 -2.39 -0.01 2.00 16 29 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.03 1.28 7.88 -2.39 -0.02 1.26 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 32 H 0.05 2.10 7.90 -2.38 -0.02 2.08 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.40 13.36 8.59 -92.71 -0.80 12.57 16 35 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.83 8.09 -2.38 -0.02 0.81 16 44 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 45 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 47 H 0.41 1.73 9.06 -74.05 -0.67 1.06 16 48 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 49 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -71.65 397.48 1.88 -69.77 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.55 Total: 23.77 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.84 Total: -21.80 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.94 Total: -84.48 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.29 Total: -34.23 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.83 Total: 46.98 kcal Total: -71.65 1.88 -69.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613051166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.423 kcal (2) G-P(sol) polarization free energy of solvation -71.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds