Wall clock time and date at job start Tue Mar 31 2020 14:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 110.05017 * 2 1 4 4 C 1.54370 * 110.04767 * 238.53301 * 2 1 3 5 5 C 1.54889 * 104.19788 * 217.08671 * 4 2 1 6 6 C 1.54893 * 102.74748 * 37.96491 * 5 4 2 7 7 C 1.53868 * 110.03486 * 121.41656 * 2 1 3 8 8 H 1.09003 * 110.03582 * 238.62087 * 7 2 1 9 9 N 1.46903 * 110.03511 * 0.02562 * 7 2 1 10 10 C 1.46899 * 111.00261 * 204.30764 * 9 7 2 11 11 C 1.52995 * 109.47034 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47139 * 60.00135 * 11 10 9 13 13 O 1.42897 * 109.47491 * 299.99694 * 11 10 9 14 14 C 1.52997 * 109.46873 * 180.02562 * 11 10 9 15 15 O 1.42900 * 109.47440 * 185.00217 * 14 11 10 16 16 C 1.35677 * 117.00671 * 180.02562 * 15 14 11 17 17 C 1.39309 * 119.81168 * 359.72427 * 16 15 14 18 18 C 1.36438 * 120.18009 * 179.76276 * 17 16 15 19 19 C 1.40830 * 119.81479 * 0.51140 * 18 17 16 20 20 C 1.41220 * 120.18341 * 179.72166 * 19 18 17 21 21 H 1.07999 * 119.99474 * 204.56792 * 20 19 18 22 22 C 1.39892 * 119.99713 * 24.56445 * 20 19 18 23 23 N 1.30871 * 119.99998 * 17.92633 * 22 20 19 24 24 Si 1.86793 * 119.99829 * 197.92199 * 22 20 19 25 25 H 1.48508 * 109.47021 * 60.00325 * 24 22 20 26 26 H 1.48496 * 109.47313 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47393 * 300.00698 * 24 22 20 28 28 C 1.40837 * 119.63802 * 359.74185 * 19 18 17 29 29 C 1.36436 * 119.81322 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47381 * 298.57805 * 1 2 3 31 31 H 1.09003 * 109.47835 * 58.57931 * 1 2 3 32 32 H 1.09006 * 109.46973 * 178.58362 * 1 2 3 33 33 H 1.09000 * 110.46678 * 98.41823 * 4 2 1 34 34 H 1.09000 * 110.61946 * 335.83050 * 4 2 1 35 35 H 1.08997 * 110.75555 * 279.65074 * 5 4 2 36 36 H 1.09001 * 110.91463 * 156.35215 * 5 4 2 37 37 H 1.08994 * 110.48975 * 203.37684 * 6 5 4 38 38 H 1.09001 * 110.59461 * 80.79091 * 6 5 4 39 39 H 1.00896 * 111.00076 * 80.34965 * 9 7 2 40 40 H 1.09001 * 109.47047 * 59.99679 * 10 9 7 41 41 H 1.08998 * 109.47126 * 300.00143 * 10 9 7 42 42 H 0.96700 * 114.00290 * 300.00926 * 13 11 10 43 43 H 1.09005 * 109.47352 * 305.00112 * 14 11 10 44 44 H 1.08998 * 109.47738 * 65.00043 * 14 11 10 45 45 H 1.08003 * 119.91099 * 0.02562 * 17 16 15 46 46 H 1.08005 * 120.09493 * 180.24916 * 18 17 16 47 47 H 0.97001 * 119.99957 * 179.97438 * 23 22 20 48 48 H 1.08008 * 120.09257 * 179.97438 * 28 19 18 49 49 H 1.07997 * 119.90716 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0591 -0.7570 -1.2369 5 6 3.3146 -1.5013 -0.7184 6 6 2.8883 -1.9405 0.7045 7 6 2.0571 -0.7535 1.2336 8 1 2.6860 -0.0951 1.8329 9 7 0.9329 -1.2470 2.0403 10 6 1.3343 -1.4405 3.4401 11 6 0.1397 -1.9531 4.2470 12 1 -0.1989 -2.9023 3.8315 13 8 -0.9225 -0.9994 4.1836 14 6 0.5576 -2.1540 5.7050 15 8 -0.5221 -2.7419 6.4334 16 6 -0.3146 -2.9874 7.7515 17 6 0.9126 -2.6714 8.3300 18 6 1.1278 -2.9106 9.6559 19 6 0.1088 -3.4886 10.4375 20 6 0.3251 -3.7450 11.8093 21 1 -0.2460 -4.5115 12.3119 22 6 1.2792 -3.0061 12.5170 23 7 1.7157 -1.8700 12.0358 24 14 1.9301 -3.6411 14.1486 25 1 2.5789 -4.9610 13.9428 26 1 2.9230 -2.6805 14.6931 27 1 0.8055 -3.7865 15.1074 28 6 -1.1271 -3.8099 9.8435 29 6 -1.3277 -3.5598 8.5174 30 1 -0.3634 0.4916 0.9024 31 1 -0.3635 0.5357 -0.8770 32 1 -0.3633 -1.0274 -0.0254 33 1 2.3302 -0.0555 -2.0259 34 1 1.3164 -1.4681 -1.5986 35 1 4.1716 -0.8291 -0.6746 36 1 3.5372 -2.3686 -1.3399 37 1 3.7644 -2.1027 1.3322 38 1 2.2791 -2.8433 0.6606 39 1 0.5549 -2.0979 1.6516 40 1 1.6725 -0.4913 3.8556 41 1 2.1448 -2.1676 3.4884 42 1 -0.6916 -0.1294 4.5370 43 1 1.4252 -2.8126 5.7468 44 1 0.8115 -1.1903 6.1464 45 1 1.6945 -2.2319 7.7283 46 1 2.0784 -2.6614 10.1039 47 1 2.3770 -1.3575 12.5267 48 1 -1.9136 -4.2538 10.4360 49 1 -2.2747 -3.8060 8.0602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619722646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:09 Heat of formation + Delta-G solvation = -84.276252 kcal Electronic energy + Delta-G solvation = -26157.518494 eV Core-core repulsion = 22469.632803 eV Total energy + Delta-G solvation = -3687.885691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.54994 -38.89628 -37.42601 -36.03674 -34.15867 -33.33920 -31.44124 -30.46655 -29.62678 -29.02573 -27.36876 -25.31891 -24.85491 -24.03873 -21.99994 -21.18891 -20.91132 -20.37033 -19.32791 -17.38507 -17.25081 -16.69589 -16.28430 -15.97275 -15.65533 -15.17235 -14.82654 -14.37923 -14.15749 -13.97670 -13.91540 -13.75828 -13.32835 -13.23227 -12.75777 -12.48889 -12.38000 -12.30959 -11.98007 -11.81078 -11.72009 -11.44647 -11.38677 -11.12738 -11.09892 -11.03840 -10.97106 -10.88841 -10.73758 -10.68091 -10.57628 -9.93027 -9.88936 -9.76876 -9.36363 -9.01089 -8.54173 -7.65930 -7.01518 -6.73427 -4.25529 2.77496 2.96336 3.06695 3.09597 3.22040 3.56831 3.94339 4.16955 4.25748 4.35621 4.51854 4.60907 4.63726 4.91206 4.98166 5.03695 5.10264 5.13627 5.23604 5.26205 5.29652 5.37213 5.40531 5.50111 5.52868 5.64935 5.65597 5.67594 5.69462 5.78450 5.89021 6.00155 6.06357 6.09915 6.13903 6.28569 6.36261 6.70874 6.82154 6.89006 7.06285 7.14008 7.27739 7.40855 7.55643 7.80017 7.90292 7.99687 8.15251 8.44521 8.64765 8.89644 8.99029 10.21376 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.002015 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.519870 B =13892.215979 C =14482.558180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.155 4.155 7 C 0.085 3.915 8 H 0.078 0.922 9 N -0.666 5.666 10 C 0.028 3.972 11 C 0.116 3.884 12 H 0.101 0.899 13 O -0.540 6.540 14 C 0.039 3.961 15 O -0.318 6.318 16 C -0.010 4.010 17 C -0.175 4.175 18 C -0.135 4.135 19 C 0.087 3.913 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.800 5.800 24 Si 0.908 3.092 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.196 4.196 29 C -0.112 4.112 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.343 0.657 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.371 0.629 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.280 0.720 48 H 0.100 0.900 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 3.408 -21.273 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.161 4.161 5 C -0.161 4.161 6 C -0.194 4.194 7 C -0.025 4.025 8 H 0.096 0.904 9 N -0.297 5.297 10 C -0.101 4.101 11 C 0.056 3.944 12 H 0.119 0.881 13 O -0.344 6.344 14 C -0.039 4.039 15 O -0.234 6.234 16 C -0.053 4.053 17 C -0.194 4.194 18 C -0.154 4.154 19 C 0.084 3.916 20 C -0.493 4.493 21 H 0.095 0.905 22 C -0.142 4.142 23 N -0.427 5.427 24 Si 0.732 3.268 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.190 1.190 28 C -0.215 4.215 29 C -0.131 4.131 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.162 0.838 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.218 0.782 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.138 0.862 47 H 0.090 0.910 48 H 0.118 0.882 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.763 3.697 -21.446 22.085 hybrid contribution 1.686 -0.469 1.112 2.073 sum 5.449 3.228 -20.333 21.297 Atomic orbital electron populations 1.21530 0.93732 1.01704 1.01097 1.21780 0.97164 0.98586 0.93118 0.91233 1.22509 0.97132 0.99011 0.97402 1.22412 0.97880 0.99895 0.95901 1.23140 1.00437 0.98702 0.97142 1.22275 0.90471 0.95473 0.94291 0.90401 1.60564 1.31279 1.36831 1.00984 1.22600 0.96554 1.01106 0.89872 1.21821 0.87322 0.93347 0.91923 0.88129 1.86612 1.38150 1.24024 1.85620 1.23115 0.90645 0.98048 0.92060 1.85862 1.38489 1.78737 1.20322 1.18597 0.96074 1.08552 0.82050 1.20594 0.95561 1.06345 0.96871 1.20933 0.99895 1.03182 0.91398 1.17598 0.90045 0.90561 0.93358 1.19436 1.18117 1.17447 0.94330 0.90517 1.25876 0.95039 0.93528 0.99767 1.69830 1.24415 1.09751 1.38676 0.86381 0.79242 0.79681 0.81469 1.18914 1.20445 1.19042 1.20606 0.97391 1.09757 0.93779 1.19623 0.96717 1.03033 0.93754 0.91298 0.94304 0.92937 0.91889 0.91526 0.91562 0.91749 0.91793 0.91483 0.83778 0.90468 0.94181 0.78214 0.92649 0.92826 0.88958 0.86157 0.90963 0.88193 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.06 37.15 0.30 -0.73 16 2 C -0.09 -0.66 3.51 -89.45 -0.31 -0.98 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.82 6.36 -25.02 -0.16 -0.98 16 5 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 6 C -0.15 -1.12 6.42 -25.07 -0.16 -1.28 16 7 C 0.09 0.68 3.21 -66.60 -0.21 0.46 16 8 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 9 N -0.67 -5.94 4.32 -105.55 -0.46 -6.39 16 10 C 0.03 0.27 5.17 -3.83 -0.02 0.25 16 11 C 0.12 1.45 3.46 -26.73 -0.09 1.36 16 12 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 13 O -0.54 -7.46 13.17 -40.11 -0.53 -7.99 16 14 C 0.04 0.60 4.36 37.16 0.16 0.76 16 15 O -0.32 -6.57 10.09 -23.61 -0.24 -6.81 16 16 C -0.01 -0.22 6.71 -38.79 -0.26 -0.48 16 17 C -0.17 -4.11 8.96 -39.83 -0.36 -4.47 16 18 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 19 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 20 C -0.46 -12.33 9.04 -37.83 -0.34 -12.68 16 21 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 22 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 23 N -0.80 -20.75 10.96 55.54 0.61 -20.14 16 24 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 28 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 29 C -0.11 -2.67 9.92 -39.83 -0.40 -3.06 16 30 H 0.07 0.68 7.81 -51.93 -0.41 0.27 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.45 7.47 -51.93 -0.39 0.06 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.50 7.57 -51.93 -0.39 0.10 16 39 H 0.34 3.04 7.65 -39.29 -0.30 2.73 16 40 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 41 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.37 4.11 9.04 45.56 0.41 4.53 16 43 H 0.06 0.83 7.64 -51.93 -0.40 0.43 16 44 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 45 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 46 H 0.12 3.21 6.16 -52.48 -0.32 2.88 16 47 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 48 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 49 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -28.87 389.06 -10.74 -39.60 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.53 Total: 10.56 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -3.43 Total: -28.38 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.15 Total: -26.53 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.77 Total: -14.80 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.87 -10.74 -39.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619722646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.671 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds