Wall clock time and date at job start Tue Mar 31 2020 14:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 O 1.42893 * 109.47657 * 120.00505 * 2 1 3 5 5 C 1.42902 * 114.00416 * 89.99831 * 4 2 1 6 6 C 1.53111 * 109.52384 * 90.32023 * 5 4 2 7 7 C 1.53045 * 109.27858 * 177.55988 * 6 5 4 8 8 N 1.46842 * 109.52190 * 300.81925 * 7 6 5 9 9 C 1.46899 * 110.99918 * 185.83618 * 8 7 6 10 10 C 1.50696 * 109.47330 * 169.99934 * 9 8 7 11 11 C 1.38304 * 119.93112 * 269.73015 * 10 9 8 12 12 C 1.38105 * 120.06471 * 179.72268 * 11 10 9 13 13 C 1.38881 * 119.93314 * 0.54712 * 12 11 10 14 14 O 1.35751 * 120.06867 * 179.74962 * 13 12 11 15 15 C 1.34830 * 116.99865 * 174.44298 * 14 13 12 16 16 H 1.08001 * 120.00024 * 5.05651 * 15 14 13 17 17 C 1.38654 * 119.99812 * 185.05152 * 15 14 13 18 18 N 1.31553 * 120.00225 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46820 * 90.00031 * 19 17 15 21 21 H 1.48492 * 109.46992 * 210.00041 * 19 17 15 22 22 H 1.48496 * 109.47046 * 330.00294 * 19 17 15 23 23 C 1.38881 * 119.86173 * 359.72627 * 13 12 11 24 24 C 1.38098 * 119.92943 * 359.97438 * 23 13 12 25 25 C 1.46845 * 111.19901 * 61.74160 * 8 7 6 26 26 C 1.53039 * 109.52278 * 298.25621 * 25 8 7 27 27 H 1.08993 * 109.47283 * 59.99898 * 1 2 3 28 28 H 1.08998 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46366 * 299.99685 * 1 2 3 30 30 H 1.09007 * 109.46890 * 240.00307 * 2 1 3 31 31 H 1.09002 * 109.47164 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47192 * 299.99975 * 3 2 1 33 33 H 1.08993 * 109.47049 * 60.00224 * 3 2 1 34 34 H 1.08999 * 109.52127 * 330.12438 * 5 4 2 35 35 H 1.08998 * 109.50705 * 57.61918 * 6 5 4 36 36 H 1.09000 * 109.50077 * 297.50071 * 6 5 4 37 37 H 1.08994 * 109.46117 * 180.80201 * 7 6 5 38 38 H 1.09000 * 109.45574 * 60.83759 * 7 6 5 39 39 H 1.08997 * 109.47461 * 290.00233 * 9 8 7 40 40 H 1.09004 * 109.47017 * 49.99795 * 9 8 7 41 41 H 1.07992 * 119.96741 * 0.02562 * 11 10 9 42 42 H 1.07997 * 120.03064 * 180.27228 * 12 11 10 43 43 H 0.96992 * 120.00145 * 179.97438 * 18 17 15 44 44 H 1.07992 * 120.03632 * 179.97438 * 23 13 12 45 45 H 1.08006 * 119.96818 * 180.02562 * 24 23 13 46 46 H 1.09000 * 109.46242 * 58.27012 * 25 8 7 47 47 H 1.09003 * 109.46487 * 178.24859 * 25 8 7 48 48 H 1.09003 * 109.50430 * 179.12001 * 26 25 8 49 49 H 1.08993 * 109.50512 * 299.19581 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.2002 -2.0782 0.9884 6 6 3.6325 -2.3412 0.5156 7 6 3.8525 -3.8502 0.3851 8 7 3.6210 -4.4940 1.6844 9 6 3.9569 -5.9230 1.6311 10 6 3.9443 -6.4944 3.0255 11 6 5.1017 -6.4925 3.7826 12 6 5.0919 -7.0102 5.0629 13 6 3.9210 -7.5434 5.5858 14 8 3.9095 -8.0576 6.8421 15 6 2.7168 -8.4533 7.3306 16 1 1.8404 -8.4304 6.6998 17 6 2.6153 -8.8896 8.6428 18 7 3.6827 -8.9171 9.4113 19 14 0.9627 -9.4371 9.3199 20 1 0.7888 -10.8929 9.0839 21 1 0.9096 -9.1622 10.7782 22 1 -0.1241 -8.6915 8.6357 23 6 2.7618 -7.5490 4.8210 24 6 2.7765 -7.0242 3.5437 25 6 2.2381 -4.2950 2.1366 26 6 1.9699 -2.7994 2.3194 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.4958 -2.4517 0.2452 35 1 4.3361 -1.9323 1.2408 36 1 3.7892 -1.8656 -0.4525 37 1 4.8759 -4.0414 0.0623 38 1 3.1580 -4.2561 -0.3504 39 1 3.2235 -6.4461 1.0175 40 1 4.9489 -6.0471 1.1966 41 1 6.0129 -6.0813 3.3739 42 1 5.9950 -7.0044 5.6551 43 1 3.6117 -9.2220 10.3293 44 1 1.8499 -7.9633 5.2246 45 1 1.8753 -7.0279 2.9485 46 1 1.5511 -4.6989 1.3930 47 1 2.0889 -4.8093 3.0861 48 1 0.9387 -2.6511 2.6400 49 1 2.6467 -2.3979 3.0735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731213253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:47 Heat of formation + Delta-G solvation = -57.844108 kcal Electronic energy + Delta-G solvation = -26634.152561 eV Core-core repulsion = 22947.413054 eV Total energy + Delta-G solvation = -3686.739507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.79577 -38.98612 -37.84792 -36.35063 -33.73196 -32.35365 -31.69542 -31.01128 -30.10910 -29.14620 -27.54817 -25.77865 -24.89465 -23.29616 -22.64796 -21.90040 -21.37928 -20.30498 -19.88570 -17.95368 -17.25012 -16.92021 -16.09712 -15.31890 -15.14126 -15.06971 -14.69117 -14.53685 -14.25266 -14.08709 -13.76780 -13.60295 -13.50090 -13.28301 -13.07992 -12.67740 -12.63660 -12.53876 -12.37736 -12.13518 -11.91896 -11.89410 -11.63568 -11.36181 -11.30772 -11.23834 -11.02458 -10.90102 -10.69040 -10.62970 -10.55621 -10.42631 -10.36420 -9.58917 -9.31163 -8.81941 -8.25496 -8.11801 -7.14898 -6.43459 -4.02241 2.24484 2.30510 3.13147 3.14411 3.19189 3.41631 3.96773 3.99358 4.54675 4.58968 4.68302 4.73572 4.79145 4.87734 4.95142 5.05613 5.11795 5.17857 5.23174 5.26895 5.31097 5.36872 5.43655 5.44645 5.47878 5.51116 5.53990 5.70180 5.72288 5.75793 5.81342 5.85139 5.87587 5.90473 5.94703 6.06655 6.09121 6.24015 6.25936 6.45389 6.73402 6.92497 7.03709 7.13032 7.14515 7.19444 7.30264 7.42489 7.46970 7.85688 8.01610 9.02226 9.72968 10.74634 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.002438 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.261916 B =11482.469829 C =12402.323845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 C -0.149 4.149 4 O -0.375 6.375 5 C 0.091 3.909 6 C -0.136 4.136 7 C 0.058 3.942 8 N -0.532 5.532 9 C 0.114 3.886 10 C -0.179 4.179 11 C -0.052 4.052 12 C -0.194 4.194 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.234 4.234 24 C -0.067 4.067 25 C 0.056 3.944 26 C -0.112 4.112 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.027 0.973 47 H 0.093 0.907 48 H 0.070 0.930 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 14.181 -20.395 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.294 6.294 5 C 0.034 3.966 6 C -0.174 4.174 7 C -0.070 4.070 8 N -0.257 5.257 9 C -0.012 4.012 10 C -0.180 4.180 11 C -0.071 4.071 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.253 4.253 24 C -0.085 4.085 25 C -0.071 4.071 26 C -0.150 4.150 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.045 0.955 47 H 0.112 0.888 48 H 0.088 0.912 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.437 14.392 -19.471 24.455 hybrid contribution -1.523 -0.798 -0.513 1.794 sum -4.959 13.594 -19.984 24.673 Atomic orbital electron populations 1.22318 0.96197 1.02294 1.02481 1.22075 0.93447 0.93816 0.88457 1.21856 1.01816 0.94615 1.02366 1.87989 1.86172 1.20141 1.35105 1.22194 0.95473 0.81176 0.97789 1.22081 0.97893 0.95826 1.01583 1.22015 1.00992 0.93819 0.90159 1.61980 1.23542 1.13414 1.26758 1.20776 1.00123 0.86014 0.94321 1.19052 0.94470 1.07994 0.96489 1.20447 0.96904 0.96859 0.92871 1.20221 0.97243 1.07084 0.96770 1.19398 0.93324 0.90868 0.86222 1.83981 1.33079 1.67558 1.23546 1.21311 0.85193 1.43976 0.96267 0.89125 1.25283 0.99264 0.97000 0.94997 1.70034 1.28490 1.43576 1.07665 0.85722 0.80258 0.79055 0.78455 1.19920 1.20253 1.19218 1.21109 0.99339 1.09176 0.95718 1.20582 0.96259 0.96954 0.94744 1.22124 0.88058 0.95492 1.01472 1.21648 1.02310 0.94268 0.96762 0.91859 0.92577 0.91717 0.92513 0.91992 0.91512 0.91770 0.92852 0.90056 0.91913 0.90530 0.95402 0.95073 0.90794 0.87096 0.86596 0.92040 0.85689 0.88005 0.95463 0.88843 0.91164 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.52 37.16 0.35 -0.97 16 2 C 0.08 0.68 3.14 -26.73 -0.08 0.59 16 3 C -0.15 -1.08 9.56 37.16 0.36 -0.72 16 4 O -0.37 -4.20 9.64 -35.23 -0.34 -4.54 16 5 C 0.09 0.97 2.47 -26.61 -0.07 0.90 16 6 C -0.14 -1.37 5.72 -26.65 -0.15 -1.52 16 7 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 8 N -0.53 -6.88 4.65 -236.12 -1.10 -7.98 16 9 C 0.11 1.54 5.12 -4.98 -0.03 1.51 16 10 C -0.18 -3.01 4.89 -104.57 -0.51 -3.52 16 11 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 12 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 13 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 14 O -0.18 -5.12 9.76 0.05 0.00 -5.12 16 15 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 16 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 19 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 24 C -0.07 -1.20 7.86 -39.61 -0.31 -1.51 16 25 C 0.06 0.72 5.15 -3.83 -0.02 0.70 16 26 C -0.11 -1.34 5.75 -26.65 -0.15 -1.50 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.44 7.97 -51.93 -0.41 0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.53 7.63 -51.93 -0.40 0.13 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 37 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 40 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 45 H 0.10 1.58 7.95 -52.48 -0.42 1.17 16 46 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 1.38 5.74 -51.93 -0.30 1.09 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -30.45 389.41 -10.04 -40.49 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.37 Total: 3.27 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -1.84 Total: -22.90 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.34 Total: -32.65 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.34 Total: -9.66 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.45 -10.04 -40.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731213253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.357 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds