Wall clock time and date at job start Tue Mar 31 2020 12:25:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52997 * 109.47035 * 2 1
4 4 H 1.09002 * 109.47207 * 306.29310 * 3 2 1
5 5 C 1.50696 * 109.47396 * 66.30054 * 3 2 1
6 6 O 1.20825 * 120.00097 * 119.99949 * 5 3 2
7 7 O 1.34232 * 119.99817 * 299.99670 * 5 3 2
8 8 C 1.45199 * 117.00183 * 180.02562 * 7 5 3
9 9 C 1.50695 * 109.47092 * 180.02562 * 8 7 5
10 10 C 1.38639 * 119.74561 * 269.72131 * 9 8 7
11 11 C 1.37624 * 120.24896 * 179.71840 * 10 9 8
12 12 C 1.40714 * 119.73996 * 0.58029 * 11 10 9
13 13 C 1.41396 * 120.24111 * 179.67812 * 12 11 10
14 14 H 1.08000 * 119.99863 * 209.24355 * 13 12 11
15 15 C 1.39946 * 120.00235 * 29.24698 * 13 12 11
16 16 N 1.30827 * 119.99750 * 10.07541 * 15 13 12
17 17 Si 1.86798 * 120.00103 * 190.08120 * 15 13 12
18 18 H 1.48504 * 109.47082 * 59.99679 * 17 15 13
19 19 H 1.48501 * 109.47203 * 179.97438 * 17 15 13
20 20 H 1.48497 * 109.47199 * 299.99960 * 17 15 13
21 21 C 1.40714 * 119.51536 * 359.69807 * 12 11 10
22 22 C 1.37620 * 119.74264 * 359.97438 * 21 12 11
23 23 N 1.46909 * 109.47015 * 186.29892 * 3 2 1
24 24 C 1.46901 * 110.99761 * 311.00824 * 23 3 2
25 25 C 1.52993 * 109.46953 * 196.47649 * 24 23 3
26 26 C 1.46897 * 110.99980 * 74.95549 * 23 3 2
27 27 C 1.53004 * 109.46941 * 75.42752 * 26 23 3
28 28 H 1.08991 * 109.46979 * 53.20545 * 1 2 3
29 29 H 1.08999 * 109.46475 * 293.21042 * 1 2 3
30 30 H 1.08991 * 109.47197 * 173.21438 * 1 2 3
31 31 H 1.08995 * 109.47046 * 120.00327 * 2 1 3
32 32 H 1.09001 * 109.46485 * 239.99730 * 2 1 3
33 33 H 1.09002 * 109.46689 * 299.99643 * 8 7 5
34 34 H 1.08996 * 109.46911 * 59.99609 * 8 7 5
35 35 H 1.07999 * 119.87554 * 359.97438 * 10 9 8
36 36 H 1.08001 * 120.13049 * 180.27647 * 11 10 9
37 37 H 0.97001 * 119.99614 * 180.02562 * 16 15 13
38 38 H 1.08003 * 120.12907 * 179.97438 * 21 12 11
39 39 H 1.08001 * 119.87657 * 180.02562 * 22 21 12
40 40 H 1.09001 * 109.46843 * 316.47622 * 24 23 3
41 41 H 1.08996 * 109.47492 * 76.46996 * 24 23 3
42 42 H 1.09004 * 109.47501 * 181.42790 * 25 24 23
43 43 H 1.08999 * 109.47192 * 301.42470 * 25 24 23
44 44 H 1.08999 * 109.47334 * 61.42855 * 25 24 23
45 45 H 1.09002 * 109.47246 * 195.42398 * 26 23 3
46 46 H 1.09001 * 109.47555 * 315.42352 * 26 23 3
47 47 H 1.09000 * 109.47198 * 64.35777 * 27 26 23
48 48 H 1.09000 * 109.46841 * 184.35656 * 27 26 23
49 49 H 1.08997 * 109.46872 * 304.35357 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5876 1.9878 -0.8283
5 6 1.6691 2.1065 1.3009
6 8 2.5332 2.5378 2.0270
7 8 0.3787 2.2188 1.6531
8 6 0.0952 2.8702 2.9194
9 6 -1.3945 2.9037 3.1447
10 6 -2.1345 3.9851 2.6919
11 6 -3.4963 4.0236 2.8870
12 6 -4.1354 2.9657 3.5595
13 6 -5.5330 2.9976 3.7717
14 1 -5.9601 2.5026 4.6313
15 6 -6.3628 3.6705 2.8677
16 7 -5.8792 4.0992 1.7302
17 14 -8.1608 3.9568 3.2854
18 1 -8.2579 4.7620 4.5295
19 1 -8.8177 4.6867 2.1714
20 1 -8.8362 2.6498 3.4878
21 6 -3.3734 1.8759 4.0198
22 6 -2.0138 1.8554 3.8076
23 7 3.5012 1.4453 -0.1520
24 6 4.1301 0.5091 0.7894
25 6 5.6232 0.8240 0.9008
26 6 3.8872 1.1390 -1.5358
27 6 3.6361 2.3635 -2.4182
28 1 -0.3633 0.6155 -0.8229
29 1 -0.3632 0.4050 0.9445
30 1 -0.3633 -1.0204 -0.1214
31 1 1.8934 -0.5139 0.8899
32 1 1.8933 -0.5139 -0.8900
33 1 0.5721 2.3160 3.7278
34 1 0.4829 3.8887 2.8989
35 1 -1.6410 4.7984 2.1807
36 1 -4.0716 4.8649 2.5296
37 1 -6.4543 4.5659 1.1039
38 1 -3.8536 1.0587 4.5375
39 1 -1.4269 1.0199 4.1595
40 1 3.6633 0.6105 1.7691
41 1 3.9998 -0.5112 0.4288
42 1 6.0947 0.1135 1.5797
43 1 6.0851 0.7473 -0.0835
44 1 5.7535 1.8354 1.2855
45 1 4.9450 0.8781 -1.5688
46 1 3.2946 0.3002 -1.9012
47 1 4.2858 3.1792 -2.1010
48 1 3.8491 2.1123 -3.4573
49 1 2.5946 2.6711 -2.3249
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000776214552.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:25:48
Heat of formation + Delta-G solvation = -74.329619 kcal
Electronic energy + Delta-G solvation = -27150.743952 eV
Core-core repulsion = 23463.289579 eV
Total energy + Delta-G solvation = -3687.454373 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.53635 -38.46471 -37.54510 -35.86374 -33.92307 -33.57672 -32.00077 -30.74299
-29.46073 -29.36975 -27.39899 -26.10115 -23.90364 -23.19512 -22.86395 -21.48901
-21.07938 -20.03161 -19.36877 -17.49586 -17.36926 -16.75876 -16.12946 -15.58280
-15.29310 -15.20962 -14.70266 -14.49436 -14.02265 -13.92082 -13.74117 -13.45180
-13.13666 -12.68511 -12.64106 -12.42562 -12.40598 -12.15715 -12.02090 -11.95353
-11.72187 -11.70638 -11.53230 -11.46778 -11.17630 -11.15119 -11.00913 -10.89931
-10.77404 -10.70455 -10.38663 -10.08217 -9.95435 -9.67667 -9.43347 -9.27499
-8.44942 -7.55613 -7.39168 -6.78767 -4.47307 2.42510 2.54019 2.94185
3.00381 3.03346 3.05879 3.26936 3.81060 3.88435 4.55096 4.62020
4.77690 4.81606 4.94652 5.04737 5.09971 5.18717 5.27572 5.36860
5.38455 5.47058 5.56546 5.61059 5.64579 5.68079 5.72920 5.75955
5.80090 5.90912 5.96540 6.05548 6.06196 6.12745 6.15140 6.24194
6.31831 6.57563 6.78360 6.86392 6.89792 6.96003 7.00620 7.17897
7.27562 7.52938 7.73112 7.97080 8.00344 8.19921 8.20843 8.55635
8.80753 8.87185 10.14522
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.024001 B = 0.002565 C = 0.002489
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1166.325368 B =10912.117513 C =11247.835527
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.146 4.146
3 C 0.089 3.911
4 H 0.117 0.883
5 C 0.460 3.540
6 O -0.502 6.502
7 O -0.345 6.345
8 C 0.134 3.866
9 C -0.227 4.227
10 C -0.079 4.079
11 C -0.162 4.162
12 C 0.118 3.882
13 C -0.459 4.459
14 H 0.078 0.922
15 C 0.072 3.928
16 N -0.796 5.796
17 Si 0.913 3.087
18 H -0.264 1.264
19 H -0.278 1.278
20 H -0.265 1.265
21 C -0.225 4.225
22 C -0.068 4.068
23 N -0.520 5.520
24 C 0.049 3.951
25 C -0.143 4.143
26 C 0.047 3.953
27 C -0.149 4.149
28 H 0.057 0.943
29 H 0.083 0.917
30 H 0.053 0.947
31 H 0.067 0.933
32 H 0.072 0.928
33 H 0.059 0.941
34 H 0.061 0.939
35 H 0.089 0.911
36 H 0.122 0.878
37 H 0.282 0.718
38 H 0.094 0.906
39 H 0.088 0.912
40 H 0.080 0.920
41 H 0.034 0.966
42 H 0.056 0.944
43 H 0.051 0.949
44 H 0.065 0.935
45 H 0.079 0.921
46 H 0.040 0.960
47 H 0.062 0.938
48 H 0.058 0.942
49 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.590 -5.942 -6.817 17.165
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.185 4.185
3 C -0.021 4.021
4 H 0.135 0.865
5 C 0.302 3.698
6 O -0.390 6.390
7 O -0.262 6.262
8 C 0.062 3.938
9 C -0.228 4.228
10 C -0.098 4.098
11 C -0.181 4.181
12 C 0.115 3.885
13 C -0.489 4.489
14 H 0.096 0.904
15 C -0.145 4.145
16 N -0.421 5.421
17 Si 0.737 3.263
18 H -0.188 1.188
19 H -0.203 1.203
20 H -0.190 1.190
21 C -0.244 4.244
22 C -0.086 4.086
23 N -0.244 5.244
24 C -0.078 4.078
25 C -0.200 4.200
26 C -0.080 4.080
27 C -0.207 4.207
28 H 0.077 0.923
29 H 0.101 0.899
30 H 0.072 0.928
31 H 0.086 0.914
32 H 0.090 0.910
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.107 0.893
36 H 0.140 0.860
37 H 0.093 0.907
38 H 0.113 0.887
39 H 0.106 0.894
40 H 0.098 0.902
41 H 0.052 0.948
42 H 0.075 0.925
43 H 0.070 0.930
44 H 0.084 0.916
45 H 0.097 0.903
46 H 0.058 0.942
47 H 0.082 0.918
48 H 0.077 0.923
49 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 14.923 -5.190 -6.671 17.150
hybrid contribution -1.082 -0.607 -0.077 1.243
sum 13.841 -5.796 -6.747 16.453
Atomic orbital electron populations
1.21873 0.93364 1.01692 1.04605 1.22087 0.98587 0.95281 1.02566
1.21426 0.89384 0.96383 0.94879 0.86524 1.23334 0.81691 0.77078
0.87679 1.90606 1.50485 1.45127 1.52746 1.86755 1.26416 1.71541
1.41473 1.21707 0.94734 0.95875 0.81489 1.18710 0.91685 0.99764
1.12629 1.20572 0.94521 0.96416 0.98247 1.21355 0.92260 0.99877
1.04623 1.17694 0.93076 0.89300 0.88402 1.19616 0.91594 1.29204
1.08461 0.90378 1.25933 1.01414 0.93160 0.93990 1.69783 1.38026
1.28187 1.06147 0.86287 0.81371 0.79487 0.79106 1.18832 1.20279
1.18980 1.21021 0.93378 0.99431 1.10612 1.20383 0.94522 0.95744
0.97988 1.61844 1.05444 1.52143 1.05016 1.22134 0.95877 0.92816
0.96968 1.21739 0.94611 1.02521 1.01175 1.22186 1.01045 0.97330
0.87425 1.21803 1.02361 0.98219 0.98314 0.92347 0.89863 0.92760
0.91423 0.90971 0.92293 0.92099 0.89297 0.86050 0.90734 0.88734
0.89369 0.90155 0.94822 0.92545 0.93022 0.91604 0.90260 0.94172
0.91846 0.92292 0.92543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.00 9.37 37.16 0.35 -1.65 16
2 C -0.15 -1.64 4.46 -26.73 -0.12 -1.75 16
3 C 0.09 1.13 2.19 -68.86 -0.15 0.98 16
4 H 0.12 1.40 6.46 -51.93 -0.34 1.07 16
5 C 0.46 7.49 6.80 36.00 0.24 7.74 16
6 O -0.50 -9.21 14.67 -18.75 -0.27 -9.48 16
7 O -0.35 -6.20 7.54 -39.26 -0.30 -6.50 16
8 C 0.13 2.53 5.58 36.00 0.20 2.73 16
9 C -0.23 -4.91 5.54 -104.33 -0.58 -5.49 16
10 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16
11 C -0.16 -4.12 8.66 -38.87 -0.34 -4.45 16
12 C 0.12 3.07 5.55 -106.83 -0.59 2.48 16
13 C -0.46 -11.88 9.06 -37.74 -0.34 -12.22 16
14 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16
15 C 0.07 1.78 5.26 -17.34 -0.09 1.69 16
16 N -0.80 -20.18 10.84 55.55 0.60 -19.57 16
17 Si 0.91 18.29 29.57 -169.99 -5.03 13.26 16
18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16
19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16
20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16
21 C -0.22 -5.38 9.80 -38.87 -0.38 -5.76 16
22 C -0.07 -1.49 9.67 -39.66 -0.38 -1.88 16
23 N -0.52 -6.06 3.99 -228.04 -0.91 -6.97 16
24 C 0.05 0.55 3.99 -3.83 -0.02 0.53 16
25 C -0.14 -1.38 10.00 37.15 0.37 -1.01 16
26 C 0.05 0.43 5.44 -3.82 -0.02 0.40 16
27 C -0.15 -1.28 10.07 37.16 0.37 -0.91 16
28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16
29 H 0.08 1.29 5.92 -51.93 -0.31 0.99 16
30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.07 0.78 6.99 -51.93 -0.36 0.41 16
32 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16
33 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16
34 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16
35 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16
36 H 0.12 3.19 6.23 -52.49 -0.33 2.86 16
37 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16
38 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16
39 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16
40 H 0.08 1.07 6.20 -51.93 -0.32 0.75 16
41 H 0.03 0.33 7.31 -51.93 -0.38 -0.05 16
42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
43 H 0.05 0.43 6.53 -51.93 -0.34 0.09 16
44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
45 H 0.08 0.64 6.27 -51.93 -0.33 0.31 16
46 H 0.04 0.33 6.42 -51.93 -0.33 0.00 16
47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
49 H 0.06 0.52 6.64 -51.93 -0.34 0.18 16
LS Contribution 385.89 15.07 5.82 5.82
Total: -1.00 -27.64 385.89 -9.85 -37.49
By element:
Atomic # 1 Polarization: 14.64 SS G_CDS: -7.91 Total: 6.73 kcal
Atomic # 6 Polarization: -18.93 SS G_CDS: -1.85 Total: -20.79 kcal
Atomic # 7 Polarization: -26.23 SS G_CDS: -0.31 Total: -26.54 kcal
Atomic # 8 Polarization: -15.41 SS G_CDS: -0.57 Total: -15.98 kcal
Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -27.64 -9.85 -37.49 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776214552.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.837 kcal
(2) G-P(sol) polarization free energy of solvation -27.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.477 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.330 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds