Wall clock time and date at job start Tue Mar 31 2020 14:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 O 1.42900 * 109.47098 * 119.99830 * 2 1 3 5 5 C 1.42895 * 114.00412 * 89.99534 * 4 2 1 6 6 C 1.52998 * 109.47681 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47375 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47010 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.09002 * 109.46756 * 60.00130 * 1 2 3 28 28 H 1.08990 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46977 * 300.00330 * 1 2 3 30 30 H 1.08999 * 109.47282 * 239.99301 * 2 1 3 31 31 H 1.09004 * 109.46829 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47128 * 299.99641 * 3 2 1 33 33 H 1.08993 * 109.47844 * 59.99764 * 3 2 1 34 34 H 1.09003 * 109.47030 * 60.00107 * 5 4 2 35 35 H 1.09008 * 109.47300 * 300.00658 * 5 4 2 36 36 H 1.09001 * 109.47080 * 60.00395 * 6 5 4 37 37 H 1.08998 * 109.46872 * 300.00098 * 6 5 4 38 38 H 1.08992 * 109.47153 * 59.99702 * 7 6 5 39 39 H 1.09003 * 109.46640 * 300.00124 * 7 6 5 40 40 H 1.09001 * 109.47212 * 60.00084 * 8 7 6 41 41 H 1.08991 * 109.47261 * 299.99917 * 8 7 6 42 42 H 0.97000 * 119.99705 * 0.02562 * 9 8 7 43 43 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 44 44 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 45 45 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 46 46 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 47 47 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 48 48 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 49 49 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2000 -2.0781 0.9888 6 6 2.7078 -2.6926 2.2947 7 6 2.9158 -4.1964 2.1039 8 6 3.4242 -4.8106 3.4096 9 7 3.6227 -6.2507 3.2271 10 6 4.0690 -7.0046 4.2512 11 8 4.3066 -6.4908 5.3238 12 6 4.2737 -8.4857 4.0633 13 6 4.7744 -9.0908 5.3495 14 6 6.1252 -9.2578 5.5546 15 6 6.5880 -9.8202 6.7339 16 6 5.6987 -10.2143 7.7221 17 6 4.3445 -10.0512 7.5413 18 6 3.8632 -9.4812 6.3478 19 6 2.4737 -9.3079 6.1512 20 1 2.1148 -8.5409 5.4809 21 6 1.5637 -10.1301 6.8251 22 7 1.9281 -11.3228 7.2204 23 14 -0.1714 -9.5247 7.1603 24 1 -0.9318 -10.5763 7.8822 25 1 -0.1148 -8.2954 7.9915 26 1 -0.8471 -9.2213 5.8732 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 2.9319 -2.2468 0.1988 35 1 1.2537 -2.5433 0.7126 36 1 1.9756 -2.5241 3.0844 37 1 3.6540 -2.2275 2.5712 38 1 3.6480 -4.3646 1.3143 39 1 1.9697 -4.6617 1.8271 40 1 2.6921 -4.6424 4.1995 41 1 4.3702 -4.3452 3.6860 42 1 3.4329 -6.6615 2.3691 43 1 5.0061 -8.6539 3.2737 44 1 3.3278 -8.9510 3.7865 45 1 6.8268 -8.9539 4.7919 46 1 7.6493 -9.9521 6.8844 47 1 6.0705 -10.6510 8.6373 48 1 3.6537 -10.3584 8.3124 49 1 2.7994 -11.6704 6.9736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783088504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:25 Heat of formation + Delta-G solvation = -101.961892 kcal Electronic energy + Delta-G solvation = -25766.559211 eV Core-core repulsion = 22077.906613 eV Total energy + Delta-G solvation = -3688.652598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.28495 -38.79670 -37.55125 -35.83669 -33.80899 -33.70361 -32.31428 -31.64710 -29.17080 -28.39708 -27.61288 -26.46876 -24.85654 -23.18032 -21.87276 -21.30034 -20.89512 -20.54856 -19.39591 -17.70126 -17.18112 -16.42769 -16.23129 -15.84861 -15.39638 -15.16931 -14.77519 -14.69186 -14.10686 -14.08936 -13.76393 -13.49268 -13.20164 -13.12344 -12.85244 -12.62502 -12.31098 -12.24642 -12.15461 -11.98096 -11.90724 -11.69690 -11.66360 -11.25801 -11.16748 -11.11880 -11.00730 -10.88567 -10.80129 -10.42708 -10.35682 -9.88294 -9.60568 -9.33751 -9.17252 -8.91453 -8.69563 -7.50785 -7.45908 -7.07914 -4.37383 2.79375 2.89563 3.18264 3.22035 3.32086 3.35770 3.40674 3.74021 4.05844 4.45103 4.58607 4.63547 4.67299 4.68942 4.79297 4.97865 5.05737 5.06070 5.19082 5.24708 5.38016 5.41290 5.43289 5.46021 5.54298 5.65113 5.71251 5.77299 5.81598 5.86591 5.95666 6.02306 6.05944 6.17709 6.22105 6.37310 6.40892 6.73122 6.80574 6.93696 7.04924 7.25889 7.46898 7.72290 7.87383 7.90682 7.95884 8.00849 8.25828 8.39714 8.83558 8.88224 8.97499 10.11482 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002278 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.003628 B =12290.326803 C =13742.954269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.384 6.384 5 C 0.064 3.936 6 C -0.116 4.116 7 C -0.127 4.127 8 C 0.121 3.879 9 N -0.747 5.747 10 C 0.513 3.487 11 O -0.521 6.521 12 C -0.070 4.070 13 C -0.184 4.184 14 C -0.069 4.069 15 C -0.253 4.253 16 C -0.086 4.086 17 C -0.216 4.216 18 C 0.116 3.884 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.040 3.960 22 N -0.799 5.799 23 Si 1.060 2.940 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.277 1.277 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.395 0.605 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 16.222 -16.386 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.303 6.303 5 C -0.013 4.013 6 C -0.154 4.154 7 C -0.165 4.165 8 C -0.003 4.003 9 N -0.401 5.401 10 C 0.301 3.699 11 O -0.395 6.395 12 C -0.110 4.110 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.113 3.887 19 C -0.544 4.544 20 H 0.090 0.910 21 C -0.182 4.182 22 N -0.423 5.423 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.203 1.203 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.228 0.772 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.122 0.878 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.783 16.225 -14.638 22.178 hybrid contribution 1.342 0.151 -1.407 1.951 sum -2.441 16.376 -16.046 23.056 Atomic orbital electron populations 1.22308 0.96016 1.02424 1.02604 1.22072 0.93656 0.93829 0.88186 1.21866 1.01814 0.94557 1.02517 1.87930 1.86562 1.20256 1.35589 1.22539 0.99321 0.81437 0.98012 1.21409 1.02720 0.94142 0.97112 1.21682 1.01975 0.94898 0.97908 1.21186 1.01057 0.81156 0.96861 1.46129 1.70610 1.08220 1.15187 1.21204 0.75690 0.89681 0.83339 1.90685 1.48918 1.74177 1.25690 1.20245 1.02558 0.90268 0.97896 1.19020 0.92930 1.11372 0.95301 1.20356 0.94137 0.98073 0.96197 1.20261 0.97005 1.12845 0.97149 1.20600 0.93903 0.98950 0.97046 1.21134 0.94231 1.09873 0.98249 1.17400 0.92922 0.88777 0.89618 1.20431 0.91294 1.17171 1.25541 0.91009 1.26927 1.06325 0.93234 0.91694 1.70451 1.24225 1.14362 1.33229 0.83710 0.73393 0.76764 0.77705 1.19908 1.20037 1.20268 0.91714 0.92451 0.91695 0.92358 0.91997 0.91327 0.91726 0.93391 0.93346 0.90638 0.90754 0.91249 0.91089 0.91687 0.91905 0.77167 0.90676 0.88680 0.89628 0.89472 0.89403 0.87771 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.53 37.16 0.35 -0.80 16 2 C 0.08 0.59 3.34 -26.73 -0.09 0.50 16 3 C -0.15 -0.95 9.56 37.16 0.36 -0.59 16 4 O -0.38 -3.78 9.99 -35.23 -0.35 -4.14 16 5 C 0.06 0.53 5.75 37.16 0.21 0.74 16 6 C -0.12 -1.04 5.58 -26.73 -0.15 -1.19 16 7 C -0.13 -1.13 5.33 -26.73 -0.14 -1.27 16 8 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 9 N -0.75 -10.84 5.56 -60.30 -0.33 -11.18 16 10 C 0.51 10.19 7.46 -10.99 -0.08 10.11 16 11 O -0.52 -12.87 16.03 5.56 0.09 -12.79 16 12 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 13 C -0.18 -4.49 4.43 -103.91 -0.46 -4.96 16 14 C -0.07 -1.62 9.66 -39.66 -0.38 -2.00 16 15 C -0.25 -5.94 10.05 -39.29 -0.39 -6.33 16 16 C -0.09 -2.11 10.02 -39.66 -0.40 -2.51 16 17 C -0.22 -5.76 7.95 -38.87 -0.31 -6.07 16 18 C 0.12 3.12 5.30 -106.82 -0.57 2.55 16 19 C -0.52 -13.76 8.08 -37.74 -0.30 -14.07 16 20 H 0.07 1.88 6.73 -52.49 -0.35 1.53 16 21 C 0.04 1.02 4.94 -17.34 -0.09 0.94 16 22 N -0.80 -21.38 12.31 55.55 0.68 -20.69 16 23 Si 1.06 22.21 30.00 -169.99 -5.10 17.11 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.05 0.37 7.87 -51.92 -0.41 -0.04 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.40 4.38 8.47 -40.82 -0.35 4.04 16 43 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 44 H 0.10 1.85 7.06 -51.93 -0.37 1.49 16 45 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 48 H 0.10 2.86 6.49 -52.49 -0.34 2.52 16 49 H 0.30 8.19 6.68 -40.82 -0.27 7.92 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -32.15 401.89 -10.03 -42.18 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.45 Total: 8.38 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -2.62 Total: -24.93 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.35 Total: -31.87 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.26 Total: -16.92 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.15 -10.03 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783088504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.784 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds