Wall clock time and date at job start Tue Mar 31 2020 14:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.01793 * 2 1 4 4 C 1.54264 * 110.03315 * 238.61227 * 2 1 3 5 5 C 1.54881 * 104.19896 * 217.05840 * 4 2 1 6 6 C 1.54887 * 102.74988 * 37.93910 * 5 4 2 7 7 H 1.09005 * 110.48617 * 80.86776 * 6 5 4 8 8 N 1.46900 * 110.48984 * 203.38287 * 6 5 4 9 9 C 1.46899 * 110.99685 * 273.54493 * 8 6 5 10 10 C 1.53005 * 109.46703 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47307 * 59.99896 * 10 9 8 12 12 O 1.42904 * 109.46942 * 299.99868 * 10 9 8 13 13 C 1.53000 * 109.46880 * 180.02562 * 10 9 8 14 14 O 1.42904 * 109.47025 * 184.99679 * 13 10 9 15 15 C 1.35677 * 117.00015 * 179.97438 * 14 13 10 16 16 C 1.39310 * 119.81511 * 359.72475 * 15 14 13 17 17 C 1.36441 * 120.18310 * 179.75725 * 16 15 14 18 18 C 1.40838 * 119.81148 * 0.51869 * 17 16 15 19 19 C 1.41207 * 120.18157 * 179.71278 * 18 17 16 20 20 H 1.08006 * 120.00082 * 24.56807 * 19 18 17 21 21 C 1.39893 * 120.00328 * 204.56171 * 19 18 17 22 22 N 1.30874 * 119.99937 * 17.93104 * 21 19 18 23 23 Si 1.86798 * 120.00067 * 197.92986 * 21 19 18 24 24 H 1.48491 * 109.47207 * 59.99906 * 23 21 19 25 25 H 1.48506 * 109.47059 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47011 * 299.99843 * 23 21 19 27 27 C 1.40833 * 119.64047 * 359.73818 * 18 17 16 28 28 C 1.36440 * 119.81208 * 0.02562 * 27 18 17 29 29 C 1.53867 * 110.07262 * 121.42178 * 2 1 3 30 30 H 1.08994 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47068 * 299.93811 * 1 2 3 32 32 H 1.09004 * 109.47255 * 59.93473 * 1 2 3 33 33 H 1.09006 * 110.48902 * 98.37204 * 4 2 1 34 34 H 1.09008 * 110.59720 * 335.78889 * 4 2 1 35 35 H 1.09006 * 110.75738 * 279.62821 * 5 4 2 36 36 H 1.08997 * 110.91734 * 156.33031 * 5 4 2 37 37 H 1.00901 * 110.99767 * 149.59385 * 8 6 5 38 38 H 1.09000 * 109.47002 * 60.00391 * 9 8 6 39 39 H 1.08991 * 109.47443 * 299.99657 * 9 8 6 40 40 H 0.96702 * 114.00258 * 299.99901 * 12 10 9 41 41 H 1.09001 * 109.47058 * 304.99744 * 13 10 9 42 42 H 1.09005 * 109.47383 * 64.99814 * 13 10 9 43 43 H 1.08005 * 119.91252 * 0.02562 * 16 15 14 44 44 H 1.07995 * 120.09601 * 180.25197 * 17 16 15 45 45 H 0.96998 * 120.00654 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.09546 * 180.02562 * 27 18 17 47 47 H 1.07993 * 119.91102 * 179.97438 * 28 27 18 48 48 H 1.09001 * 110.03581 * 0.02562 * 29 2 1 49 49 H 1.09006 * 110.03271 * 238.58861 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0585 -0.7548 -1.2372 5 6 3.3144 -1.4994 -0.7202 6 6 2.8891 -1.9399 0.7025 7 1 2.2813 -2.8435 0.6563 8 7 4.0705 -2.1590 1.5476 9 6 4.5831 -3.5268 1.3914 10 6 5.8101 -3.7167 2.2854 11 1 5.5310 -3.5499 3.3258 12 8 6.8234 -2.7823 1.9083 13 6 6.3443 -5.1411 2.1223 14 8 7.4173 -5.3556 3.0415 15 6 8.0062 -6.5778 3.0264 16 6 7.5519 -7.5548 2.1434 17 6 8.1419 -8.7848 2.1185 18 6 9.2059 -9.0689 2.9964 19 6 9.8182 -10.3412 2.9815 20 1 9.7771 -10.9499 2.0902 21 6 10.4781 -10.8134 4.1210 22 7 10.2435 -10.2667 5.2867 23 14 11.6943 -12.2241 3.9788 24 1 12.7956 -11.8376 3.0608 25 1 12.2534 -12.5327 5.3195 26 1 11.0011 -13.4232 3.4430 27 6 9.6555 -8.0773 3.8897 28 6 9.0578 -6.8508 3.8985 29 6 2.0581 -0.7534 1.2333 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8906 32 1 -0.3634 0.5149 -0.8894 33 1 2.3289 -0.0526 -2.0259 34 1 1.3155 -1.4658 -1.5990 35 1 4.1713 -0.8271 -0.6764 36 1 3.5367 -2.3661 -1.3427 37 1 3.8655 -1.9579 2.5148 38 1 4.8618 -3.6937 0.3509 39 1 3.8104 -4.2395 1.6794 40 1 7.1208 -2.8728 0.9926 41 1 5.5450 -5.8543 2.3240 42 1 6.7058 -5.2792 1.1033 43 1 6.7332 -7.3366 1.4736 44 1 7.7912 -9.5398 1.4305 45 1 10.7013 -10.5938 6.0769 46 1 10.4711 -8.2871 4.5658 47 1 9.4010 -6.0894 4.5832 48 1 1.2245 -1.1199 1.8323 49 1 2.6876 -0.0949 1.8319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819249022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:59 Heat of formation + Delta-G solvation = -90.037318 kcal Electronic energy + Delta-G solvation = -25753.954667 eV Core-core repulsion = 22065.819158 eV Total energy + Delta-G solvation = -3688.135510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.37276 -38.87373 -37.49574 -36.08315 -34.64961 -33.31115 -31.17981 -30.24377 -29.58259 -29.01414 -28.07933 -25.44636 -24.74011 -24.04934 -21.98626 -20.76482 -20.65433 -20.47658 -19.91619 -17.35670 -17.17570 -16.61841 -16.43714 -16.00091 -15.49974 -15.19883 -15.01373 -14.54561 -14.12260 -14.04931 -13.93055 -13.72471 -13.60134 -13.33056 -12.86824 -12.60478 -12.32105 -12.22402 -12.13152 -11.76407 -11.75425 -11.38119 -11.34717 -11.14584 -11.12234 -11.06564 -10.97430 -10.94371 -10.83065 -10.73448 -10.59544 -9.99148 -9.84523 -9.83127 -9.32783 -9.01362 -8.65486 -7.63992 -7.02813 -6.71941 -4.25213 2.79357 2.95422 3.08144 3.10529 3.22728 3.53624 3.95317 4.15218 4.22175 4.31332 4.49021 4.55751 4.62591 4.88437 4.96037 4.97597 5.02562 5.13577 5.16415 5.21418 5.26992 5.28521 5.35487 5.45580 5.49320 5.57054 5.62221 5.63176 5.67638 5.72413 5.77297 5.90479 5.95024 6.04226 6.06320 6.09967 6.23330 6.72499 6.79732 6.98040 7.11094 7.11769 7.18898 7.46847 7.56026 7.78177 7.79895 8.00665 8.20870 8.45782 8.65657 8.90116 8.99158 10.22517 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.042209 B = 0.001761 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.209751 B =15896.389219 C =16135.126450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.113 4.113 6 C 0.080 3.920 7 H 0.047 0.953 8 N -0.671 5.671 9 C 0.030 3.970 10 C 0.115 3.885 11 H 0.102 0.898 12 O -0.540 6.540 13 C 0.039 3.961 14 O -0.317 6.317 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.799 5.799 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.133 4.133 28 C -0.119 4.119 29 C -0.123 4.123 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.343 0.657 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.371 0.629 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.281 0.719 46 H 0.126 0.874 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.343 16.032 -8.725 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.159 4.159 5 C -0.151 4.151 6 C -0.030 4.030 7 H 0.065 0.935 8 N -0.302 5.302 9 C -0.099 4.099 10 C 0.055 3.945 11 H 0.120 0.880 12 O -0.344 6.344 13 C -0.039 4.039 14 O -0.233 6.233 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.218 4.218 18 C 0.085 3.915 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.425 5.425 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.152 4.152 28 C -0.138 4.138 29 C -0.160 4.160 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.161 0.839 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.217 0.783 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.143 0.857 47 H 0.116 0.884 48 H 0.082 0.918 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.882 16.616 -8.171 23.756 hybrid contribution -0.357 -1.720 -0.234 1.773 sum -15.239 14.896 -8.405 22.908 Atomic orbital electron populations 1.21902 0.95140 1.01709 1.01549 1.21664 0.95427 0.99522 0.94649 0.90943 1.22432 0.97393 0.98971 0.97129 1.22516 0.97962 0.99976 0.94687 1.22428 0.89744 0.96846 0.93988 0.93526 1.60438 1.32443 1.24744 1.12619 1.22601 0.96766 0.89639 1.00943 1.21843 0.86542 0.86849 0.99280 0.88003 1.86624 1.56788 1.57328 1.33610 1.23110 0.90469 0.96607 0.93702 1.85889 1.47536 1.31989 1.57861 1.18627 0.99798 0.84361 1.02442 1.20393 1.01947 0.95293 1.01097 1.20549 0.99872 0.96041 1.05379 1.17595 0.89960 0.93072 0.90840 1.19425 1.30202 1.01209 0.98594 0.90607 1.25874 0.95856 0.97838 0.94601 1.69821 1.34922 1.38581 0.99158 0.86382 0.81003 0.81118 0.78272 1.18880 1.20381 1.19119 1.20981 1.01195 0.90938 1.02136 1.19846 0.96866 0.97659 0.99411 1.22386 0.98987 0.96941 0.97731 0.92698 0.92779 0.92740 0.91637 0.91711 0.90313 0.92096 0.83860 0.90422 0.94156 0.78273 0.92629 0.92913 0.88990 0.88795 0.90855 0.85661 0.88419 0.91839 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 2 C -0.09 -0.61 3.50 -89.50 -0.31 -0.92 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.81 6.36 -25.08 -0.16 -0.97 16 5 C -0.11 -0.89 6.50 -24.74 -0.16 -1.05 16 6 C 0.08 0.65 3.17 -66.05 -0.21 0.44 16 7 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 8 N -0.67 -6.23 6.17 -104.97 -0.65 -6.88 16 9 C 0.03 0.30 5.19 -3.82 -0.02 0.28 16 10 C 0.11 1.45 3.46 -26.73 -0.09 1.35 16 11 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 12 O -0.54 -7.50 13.17 -40.10 -0.53 -8.03 16 13 C 0.04 0.59 4.36 37.16 0.16 0.75 16 14 O -0.32 -6.57 10.09 -23.61 -0.24 -6.81 16 15 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 16 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 17 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 18 C 0.09 2.36 5.57 -106.81 -0.60 1.76 16 19 C -0.46 -12.39 9.04 -37.84 -0.34 -12.73 16 20 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 21 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 22 N -0.80 -20.80 10.96 55.54 0.61 -20.19 16 23 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 28 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 29 C -0.12 -0.87 5.94 -25.62 -0.15 -1.02 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.42 7.86 -51.92 -0.41 0.01 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.34 3.06 8.42 -39.29 -0.33 2.73 16 38 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.37 4.05 9.05 45.56 0.41 4.46 16 41 H 0.06 0.82 7.63 -51.93 -0.40 0.43 16 42 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 43 H 0.09 1.80 6.27 -52.48 -0.33 1.47 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 45 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 46 H 0.13 3.38 6.16 -52.49 -0.32 3.05 16 47 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 48 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 49 H 0.07 0.57 7.99 -51.93 -0.41 0.15 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -29.29 392.59 -10.91 -40.20 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.61 Total: 10.02 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.38 Total: -27.94 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: -0.04 Total: -27.07 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.77 Total: -14.84 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.29 -10.91 -40.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819249022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.842 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds