Wall clock time and date at job start Tue Mar 31 2020 14:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.01793 * 2 1 4 4 C 1.54264 * 110.03315 * 238.61227 * 2 1 3 5 5 C 1.54881 * 104.19896 * 217.05840 * 4 2 1 6 6 C 1.54887 * 102.74988 * 37.93910 * 5 4 2 7 7 H 1.09005 * 110.48617 * 80.86776 * 6 5 4 8 8 N 1.46900 * 110.48984 * 203.38287 * 6 5 4 9 9 C 1.46899 * 110.99685 * 273.54493 * 8 6 5 10 10 C 1.53005 * 109.46703 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47307 * 59.99896 * 10 9 8 12 12 O 1.42904 * 109.46942 * 299.99868 * 10 9 8 13 13 C 1.53000 * 109.46880 * 180.02562 * 10 9 8 14 14 O 1.42904 * 109.47025 * 184.99679 * 13 10 9 15 15 C 1.35677 * 117.00015 * 179.97438 * 14 13 10 16 16 C 1.39310 * 119.81511 * 359.72475 * 15 14 13 17 17 C 1.36441 * 120.18310 * 179.75725 * 16 15 14 18 18 C 1.40838 * 119.81148 * 0.51869 * 17 16 15 19 19 C 1.41207 * 120.18157 * 179.71278 * 18 17 16 20 20 H 1.08006 * 120.00082 * 24.56807 * 19 18 17 21 21 C 1.39893 * 120.00328 * 204.56171 * 19 18 17 22 22 N 1.30874 * 119.99937 * 17.93104 * 21 19 18 23 23 Si 1.86798 * 120.00067 * 197.92986 * 21 19 18 24 24 H 1.48491 * 109.47207 * 59.99906 * 23 21 19 25 25 H 1.48506 * 109.47059 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47011 * 299.99843 * 23 21 19 27 27 C 1.40833 * 119.64047 * 359.73818 * 18 17 16 28 28 C 1.36440 * 119.81208 * 0.02562 * 27 18 17 29 29 C 1.53867 * 110.07262 * 121.42178 * 2 1 3 30 30 H 1.08994 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47068 * 299.93811 * 1 2 3 32 32 H 1.09004 * 109.47255 * 59.93473 * 1 2 3 33 33 H 1.09006 * 110.48902 * 98.37204 * 4 2 1 34 34 H 1.09008 * 110.59720 * 335.78889 * 4 2 1 35 35 H 1.09006 * 110.75738 * 279.62821 * 5 4 2 36 36 H 1.08997 * 110.91734 * 156.33031 * 5 4 2 37 37 H 1.00901 * 110.99767 * 149.59385 * 8 6 5 38 38 H 1.09000 * 109.47002 * 60.00391 * 9 8 6 39 39 H 1.08991 * 109.47443 * 299.99657 * 9 8 6 40 40 H 0.96702 * 114.00258 * 299.99901 * 12 10 9 41 41 H 1.09001 * 109.47058 * 304.99744 * 13 10 9 42 42 H 1.09005 * 109.47383 * 64.99814 * 13 10 9 43 43 H 1.08005 * 119.91252 * 0.02562 * 16 15 14 44 44 H 1.07995 * 120.09601 * 180.25197 * 17 16 15 45 45 H 0.96998 * 120.00654 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.09546 * 180.02562 * 27 18 17 47 47 H 1.07993 * 119.91102 * 179.97438 * 28 27 18 48 48 H 1.09001 * 110.03581 * 0.02562 * 29 2 1 49 49 H 1.09006 * 110.03271 * 238.58861 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0585 -0.7548 -1.2372 5 6 3.3144 -1.4994 -0.7202 6 6 2.8891 -1.9399 0.7025 7 1 2.2813 -2.8435 0.6563 8 7 4.0705 -2.1590 1.5476 9 6 4.5831 -3.5268 1.3914 10 6 5.8101 -3.7167 2.2854 11 1 5.5310 -3.5499 3.3258 12 8 6.8234 -2.7823 1.9083 13 6 6.3443 -5.1411 2.1223 14 8 7.4173 -5.3556 3.0415 15 6 8.0062 -6.5778 3.0264 16 6 7.5519 -7.5548 2.1434 17 6 8.1419 -8.7848 2.1185 18 6 9.2059 -9.0689 2.9964 19 6 9.8182 -10.3412 2.9815 20 1 9.7771 -10.9499 2.0902 21 6 10.4781 -10.8134 4.1210 22 7 10.2435 -10.2667 5.2867 23 14 11.6943 -12.2241 3.9788 24 1 12.7956 -11.8376 3.0608 25 1 12.2534 -12.5327 5.3195 26 1 11.0011 -13.4232 3.4430 27 6 9.6555 -8.0773 3.8897 28 6 9.0578 -6.8508 3.8985 29 6 2.0581 -0.7534 1.2333 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8906 32 1 -0.3634 0.5149 -0.8894 33 1 2.3289 -0.0526 -2.0259 34 1 1.3155 -1.4658 -1.5990 35 1 4.1713 -0.8271 -0.6764 36 1 3.5367 -2.3661 -1.3427 37 1 3.8655 -1.9579 2.5148 38 1 4.8618 -3.6937 0.3509 39 1 3.8104 -4.2395 1.6794 40 1 7.1208 -2.8728 0.9926 41 1 5.5450 -5.8543 2.3240 42 1 6.7058 -5.2792 1.1033 43 1 6.7332 -7.3366 1.4736 44 1 7.7912 -9.5398 1.4305 45 1 10.7013 -10.5938 6.0769 46 1 10.4711 -8.2871 4.5658 47 1 9.4010 -6.0894 4.5832 48 1 1.2245 -1.1199 1.8323 49 1 2.6876 -0.0949 1.8319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819249022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:58 Heat of formation + Delta-G solvation = -107.771804 kcal Electronic energy + Delta-G solvation = -25754.723692 eV Core-core repulsion = 22065.819158 eV Total energy + Delta-G solvation = -3688.904535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.67479 -39.84536 -38.77362 -37.63139 -35.43036 -35.17662 -32.17313 -31.55917 -31.00015 -30.58489 -28.91831 -26.84209 -25.89449 -24.96552 -23.24938 -22.46233 -22.22442 -21.20408 -20.49765 -19.25687 -18.72818 -17.71575 -17.44206 -17.05398 -16.85235 -16.26892 -15.99362 -15.78699 -15.67987 -15.25497 -14.97657 -14.82487 -14.44640 -14.28803 -14.07346 -13.93319 -13.87355 -13.63012 -13.23814 -13.04365 -12.93042 -12.78603 -12.62907 -12.39640 -12.34907 -11.98129 -11.87703 -11.72456 -11.70184 -11.59789 -11.55488 -11.54648 -11.33013 -11.19449 -10.88417 -10.86257 -9.56963 -9.36484 -8.93176 -8.59783 -6.23093 0.94958 1.02038 1.39749 1.50746 1.54871 2.22691 2.38590 2.72446 3.22273 3.55089 3.61289 3.69721 3.75288 3.90448 3.96755 4.04215 4.08831 4.28084 4.31624 4.35697 4.40313 4.45978 4.49053 4.58617 4.60874 4.66157 4.74951 4.80219 4.86408 4.96994 4.98708 5.04181 5.07131 5.09972 5.17454 5.21186 5.27832 5.30577 5.35385 5.36842 5.57479 5.58090 5.63932 5.87848 6.05122 6.09968 6.25862 6.41004 6.56134 6.79834 6.88517 6.94592 7.09788 8.36729 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.042209 B = 0.001761 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.209751 B =15896.389219 C =16135.126450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.113 4.113 6 C 0.080 3.920 7 H 0.048 0.952 8 N -0.678 5.678 9 C 0.042 3.958 10 C 0.124 3.876 11 H 0.094 0.906 12 O -0.558 6.558 13 C 0.030 3.970 14 O -0.331 6.331 15 C 0.000 4.000 16 C -0.165 4.165 17 C -0.207 4.207 18 C 0.054 3.946 19 C -0.500 4.500 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.831 5.831 23 Si 0.983 3.017 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.152 4.152 28 C -0.135 4.135 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.344 0.656 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.383 0.617 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.288 0.712 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.587 16.279 -9.889 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.029 4.029 7 H 0.066 0.934 8 N -0.310 5.310 9 C -0.088 4.088 10 C 0.064 3.936 11 H 0.112 0.888 12 O -0.364 6.364 13 C -0.047 4.047 14 O -0.247 6.247 15 C -0.044 4.044 16 C -0.184 4.184 17 C -0.227 4.227 18 C 0.051 3.949 19 C -0.530 4.530 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.458 5.458 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.183 1.183 27 C -0.172 4.172 28 C -0.153 4.153 29 C -0.157 4.157 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.087 0.913 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.148 16.887 -9.352 25.168 hybrid contribution -0.082 -1.631 0.091 1.636 sum -16.230 15.256 -9.261 24.123 Atomic orbital electron populations 1.21879 0.94395 1.01830 1.01967 1.21668 0.96045 0.99311 0.94242 0.91074 1.22421 0.96880 0.99041 0.97285 1.22492 0.98072 0.99838 0.94694 1.22454 0.89379 0.97216 0.93884 0.93448 1.60433 1.33218 1.24384 1.12959 1.22446 0.95560 0.90230 1.00532 1.21779 0.87193 0.84921 0.99667 0.88764 1.86594 1.57379 1.57614 1.34858 1.23501 0.89238 0.98644 0.93272 1.85881 1.48940 1.30400 1.59463 1.18697 0.98947 0.85443 1.01346 1.20700 1.02357 0.94211 1.01105 1.20802 0.99459 0.97286 1.05165 1.17965 0.91240 0.93645 0.92002 1.19693 1.32174 1.01694 0.99397 0.90496 1.26747 0.97025 1.00521 0.93771 1.69881 1.35822 1.40165 0.99944 0.85249 0.78231 0.77612 0.78578 1.18570 1.19348 1.18319 1.20896 1.01671 0.91891 1.02726 1.20013 0.97681 0.97391 1.00260 1.22362 0.98899 0.96514 0.97976 0.92699 0.92519 0.92220 0.91186 0.91263 0.91536 0.92084 0.83715 0.89697 0.93236 0.76876 0.91548 0.91604 0.85332 0.87558 0.90193 0.87256 0.87593 0.91301 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.84 71.98 0.64 -0.73 16 2 C -0.09 -1.07 3.50 -10.07 -0.04 -1.10 16 3 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.12 -1.38 6.36 31.67 0.20 -1.17 16 5 C -0.11 -1.60 6.50 31.88 0.21 -1.40 16 6 C 0.08 1.16 3.17 45.99 0.15 1.30 16 7 H 0.05 0.70 7.87 -2.38 -0.02 0.68 16 8 N -0.68 -11.44 6.17 -486.03 -3.00 -14.44 16 9 C 0.04 0.73 5.19 86.30 0.45 1.17 16 10 C 0.12 2.90 3.46 30.60 0.11 3.01 16 11 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 12 O -0.56 -14.68 13.17 -144.32 -1.90 -16.58 16 13 C 0.03 0.85 4.36 71.98 0.31 1.16 16 14 O -0.33 -13.27 10.09 -85.29 -0.86 -14.13 16 15 C 0.00 -0.02 6.71 22.79 0.15 0.13 16 16 C -0.17 -7.26 8.96 22.11 0.20 -7.06 16 17 C -0.21 -10.21 9.74 22.49 0.22 -9.99 16 18 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 19 C -0.50 -27.24 9.04 23.40 0.21 -27.03 16 20 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 21 C 0.03 1.70 5.13 85.24 0.44 2.14 16 22 N -0.83 -44.30 10.96 21.82 0.24 -44.06 16 23 Si 0.98 38.57 29.60 68.60 2.03 40.61 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 27 C -0.15 -8.31 8.64 22.48 0.19 -8.11 16 28 C -0.13 -6.74 9.92 22.11 0.22 -6.52 16 29 C -0.12 -1.52 5.94 31.32 0.19 -1.33 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.75 7.86 -2.38 -0.02 0.73 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.34 5.64 8.42 -89.69 -0.76 4.89 16 38 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 39 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 40 H 0.38 7.70 9.05 -74.06 -0.67 7.03 16 41 H 0.07 1.77 7.63 -2.39 -0.02 1.75 16 42 H 0.07 1.72 7.66 -2.38 -0.02 1.70 16 43 H 0.13 4.61 6.27 -2.91 -0.02 4.59 16 44 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 45 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 46 H 0.11 6.18 6.16 -2.91 -0.02 6.17 16 47 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 48 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 49 H 0.07 0.96 7.99 -2.38 -0.02 0.94 16 Total: -1.00 -63.24 392.59 -0.25 -63.49 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.49 Total: 37.81 kcal Atomic # 6 Polarization: -56.42 SS G_CDS: 3.72 Total: -52.70 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -2.76 Total: -58.50 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -2.76 Total: -30.71 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.61 kcal Total: -63.24 -0.25 -63.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819249022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.280 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds