Wall clock time and date at job start Tue Mar 31 2020 14:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.67084 * 2 1 4 4 C 1.54889 * 110.75311 * 236.56955 * 2 1 3 5 5 C 1.54263 * 104.19620 * 203.73788 * 4 2 1 6 6 C 1.53881 * 106.59849 * 23.61280 * 5 4 2 7 7 H 1.08998 * 110.02943 * 240.71248 * 6 5 4 8 8 N 1.46894 * 110.03319 * 119.28426 * 6 5 4 9 9 C 1.46895 * 111.00461 * 87.83346 * 8 6 5 10 10 C 1.53000 * 109.47428 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.46995 * 305.00315 * 10 9 8 12 12 O 1.42900 * 109.46965 * 65.00374 * 10 9 8 13 13 C 1.53005 * 109.46984 * 184.99928 * 10 9 8 14 14 O 1.42895 * 109.46998 * 175.00434 * 13 10 9 15 15 C 1.35674 * 117.00489 * 180.02562 * 14 13 10 16 16 C 1.39313 * 119.81238 * 359.71801 * 15 14 13 17 17 C 1.36436 * 120.18482 * 179.76735 * 16 15 14 18 18 C 1.40832 * 119.81231 * 0.50858 * 17 16 15 19 19 C 1.41214 * 120.18295 * 179.72024 * 18 17 16 20 20 H 1.07995 * 120.00090 * 204.57032 * 19 18 17 21 21 C 1.39895 * 119.99844 * 24.57231 * 19 18 17 22 22 N 1.30884 * 119.99800 * 17.91841 * 21 19 18 23 23 Si 1.86797 * 119.99974 * 197.92589 * 21 19 18 24 24 H 1.48491 * 109.47416 * 89.99575 * 23 21 19 25 25 H 1.48502 * 109.46745 * 210.00093 * 23 21 19 26 26 H 1.48507 * 109.46741 * 329.99522 * 23 21 19 27 27 C 1.40831 * 119.63901 * 359.74648 * 18 17 16 28 28 C 1.36442 * 119.81382 * 359.97438 * 27 18 17 29 29 C 1.54262 * 106.59356 * 359.97438 * 6 5 4 30 30 H 1.09002 * 109.46756 * 296.75711 * 1 2 3 31 31 H 1.08993 * 109.47899 * 56.76027 * 1 2 3 32 32 H 1.09002 * 109.47317 * 176.76480 * 1 2 3 33 33 H 1.08996 * 110.48936 * 322.42052 * 4 2 1 34 34 H 1.09004 * 110.48635 * 85.06318 * 4 2 1 35 35 H 1.08993 * 110.03705 * 264.32592 * 5 4 2 36 36 H 1.09001 * 110.07219 * 142.91655 * 5 4 2 37 37 H 1.00901 * 111.00256 * 323.87651 * 8 6 5 38 38 H 1.09007 * 109.47208 * 299.99848 * 9 8 6 39 39 H 1.09000 * 109.47270 * 59.99474 * 9 8 6 40 40 H 0.96699 * 114.00123 * 59.99646 * 12 10 9 41 41 H 1.09003 * 109.47224 * 295.00107 * 13 10 9 42 42 H 1.08994 * 109.46765 * 55.00068 * 13 10 9 43 43 H 1.08004 * 119.90970 * 0.02641 * 16 15 14 44 44 H 1.08008 * 120.09520 * 180.25389 * 17 16 15 45 45 H 0.96996 * 119.99407 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.09856 * 179.97438 * 27 18 17 47 47 H 1.08003 * 119.90679 * 179.97438 * 28 27 18 48 48 H 1.09001 * 110.48351 * 217.70987 * 29 6 5 49 49 H 1.08995 * 110.60007 * 95.13154 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0788 -0.7980 -1.2088 5 6 3.4930 -1.2280 -0.7675 6 6 3.4931 -1.2255 0.7713 7 1 4.2327 -0.5165 1.1434 8 7 3.7882 -2.5729 1.2767 9 6 5.2364 -2.7803 1.4086 10 6 5.5036 -4.1911 1.9369 11 1 4.9566 -4.3401 2.8678 12 8 5.0706 -5.1513 0.9711 13 6 7.0021 -4.3648 2.1923 14 8 7.2382 -5.6392 2.7940 15 6 8.5250 -5.9528 3.0880 16 6 9.5428 -5.0477 2.7949 17 6 10.8389 -5.3533 3.0916 18 6 11.1478 -6.5921 3.6860 19 6 12.4874 -6.9188 3.9910 20 1 12.7877 -7.9536 4.0636 21 6 13.4254 -5.9020 4.1992 22 7 13.0232 -4.6842 4.4604 23 14 15.2517 -6.2824 4.1042 24 1 15.7250 -6.0930 2.7095 25 1 15.9953 -5.3681 5.0078 26 1 15.4867 -7.6885 4.5200 27 6 10.1136 -7.5035 3.9742 28 6 8.8219 -7.1801 3.6763 29 6 2.0792 -0.7934 1.2113 30 1 -0.3633 0.4627 0.9177 31 1 -0.3634 0.5632 -0.8594 32 1 -0.3634 -1.0260 -0.0580 33 1 1.4573 -1.6721 -1.4027 34 1 2.1318 -0.1626 -2.0929 35 1 4.2325 -0.5203 -1.1421 36 1 3.7127 -2.2289 -1.1392 37 1 3.3740 -3.2790 0.6869 38 1 5.7108 -2.6609 0.4345 39 1 5.6464 -2.0484 2.1045 40 1 5.5162 -5.0776 0.1161 41 1 7.5413 -4.3039 1.2469 42 1 7.3504 -3.5773 2.8605 43 1 9.3046 -4.0998 2.3353 44 1 11.6264 -4.6488 2.8674 45 1 13.6736 -3.9791 4.6043 46 1 10.3421 -8.4557 4.4296 47 1 8.0277 -7.8781 3.8963 48 1 2.1325 -0.1552 2.0933 49 1 1.4560 -1.6653 1.4097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819249129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:09 Heat of formation + Delta-G solvation = -91.698958 kcal Electronic energy + Delta-G solvation = -25846.841948 eV Core-core repulsion = 22158.634384 eV Total energy + Delta-G solvation = -3688.207564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.46051 -38.88001 -37.54987 -36.09645 -34.60737 -33.34098 -31.23424 -30.04267 -29.61902 -29.06454 -28.13875 -25.51236 -24.69910 -23.94652 -21.99941 -20.94911 -20.52898 -20.28373 -20.23117 -17.37448 -17.20254 -16.62819 -16.46185 -16.05449 -15.69594 -15.15814 -14.85450 -14.35896 -14.24194 -13.95501 -13.92926 -13.75289 -13.45533 -13.27076 -12.79029 -12.72737 -12.41774 -12.37070 -12.00017 -11.82125 -11.70960 -11.55967 -11.41291 -11.26993 -11.12831 -11.04976 -11.03701 -10.89340 -10.86248 -10.76081 -10.56341 -10.03173 -9.88256 -9.77815 -9.36446 -9.02147 -8.62263 -7.65838 -7.01539 -6.73341 -4.25569 2.76269 2.96315 3.07752 3.11348 3.21190 3.55385 3.94607 4.11889 4.28494 4.30450 4.42415 4.57954 4.61269 4.89369 4.92802 4.97384 5.04947 5.12791 5.19025 5.22247 5.24821 5.31040 5.39422 5.42319 5.49607 5.57458 5.65323 5.66479 5.67093 5.68558 5.78762 5.83468 5.96171 6.08420 6.09938 6.11960 6.28716 6.71128 6.81513 6.89123 7.06542 7.17973 7.27844 7.40670 7.55657 7.62005 7.90235 8.00019 8.15309 8.44615 8.65003 8.89832 8.99077 10.21465 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.001886 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.053952 B =14841.411461 C =15427.556522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.155 4.155 6 C 0.082 3.918 7 H 0.078 0.922 8 N -0.678 5.678 9 C 0.031 3.969 10 C 0.112 3.888 11 H 0.115 0.885 12 O -0.551 6.551 13 C 0.040 3.960 14 O -0.318 6.318 15 C -0.010 4.010 16 C -0.175 4.175 17 C -0.134 4.134 18 C 0.086 3.914 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.801 5.801 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.195 4.195 28 C -0.112 4.112 29 C -0.107 4.107 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.349 0.651 38 H 0.035 0.965 39 H 0.083 0.917 40 H 0.369 0.631 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.279 0.721 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.737 10.562 -9.808 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.194 4.194 6 C -0.028 4.028 7 H 0.096 0.904 8 N -0.309 5.309 9 C -0.098 4.098 10 C 0.052 3.948 11 H 0.132 0.868 12 O -0.356 6.356 13 C -0.038 4.038 14 O -0.234 6.234 15 C -0.053 4.053 16 C -0.194 4.194 17 C -0.154 4.154 18 C 0.084 3.916 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.427 5.427 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.215 4.215 28 C -0.131 4.131 29 C -0.145 4.145 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.169 0.831 38 H 0.053 0.947 39 H 0.102 0.898 40 H 0.215 0.785 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.262 10.649 -8.535 22.798 hybrid contribution 1.836 0.401 -1.426 2.359 sum -16.426 11.050 -9.961 22.162 Atomic orbital electron populations 1.21749 0.94896 1.01880 1.01538 1.22122 0.95540 0.99121 0.95174 0.90793 1.22378 0.95766 0.99729 0.97626 1.22926 0.97777 1.01591 0.97128 1.22259 0.97811 0.90810 0.91957 0.90396 1.60469 1.10736 1.03594 1.56107 1.22565 0.89327 0.97774 1.00169 1.21979 0.93026 0.86466 0.93302 0.86760 1.86640 1.66483 1.57240 1.25201 1.23089 0.95847 0.87050 0.97776 1.85863 1.25752 1.33942 1.77815 1.18601 0.81579 0.96581 1.08510 1.20597 0.94316 0.98128 1.06358 1.20934 0.94353 0.99048 1.01031 1.17604 0.92855 0.91372 0.89764 1.19480 0.93098 0.94056 1.42690 0.90460 1.25880 1.01490 0.94543 0.92297 1.69845 1.36662 1.02141 1.34047 0.86322 0.81944 0.79546 0.78949 1.19394 1.20413 1.18638 1.20606 0.91620 1.01168 1.08112 1.19624 0.96335 0.94323 1.02822 1.22419 0.95141 0.99819 0.97135 0.92618 0.92858 0.92549 0.91500 0.91940 0.91779 0.91737 0.83123 0.94715 0.89827 0.78479 0.93093 0.92259 0.88949 0.86154 0.91024 0.88183 0.88453 0.91546 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.28 37.16 0.34 -0.50 16 2 C -0.10 -0.66 3.49 -88.64 -0.31 -0.97 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.77 6.28 -25.07 -0.16 -0.93 16 5 C -0.15 -1.12 6.43 -25.61 -0.16 -1.29 16 6 C 0.08 0.67 3.23 -66.60 -0.22 0.45 16 7 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 8 N -0.68 -6.44 6.22 -105.55 -0.66 -7.10 16 9 C 0.03 0.31 5.18 -3.83 -0.02 0.29 16 10 C 0.11 1.42 3.49 -26.73 -0.09 1.33 16 11 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 12 O -0.55 -7.18 12.82 -40.09 -0.51 -7.69 16 13 C 0.04 0.62 4.36 37.16 0.16 0.78 16 14 O -0.32 -6.59 10.09 -23.58 -0.24 -6.83 16 15 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 16 C -0.18 -4.12 8.96 -39.83 -0.36 -4.48 16 17 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 18 C 0.09 2.32 5.57 -106.81 -0.60 1.73 16 19 C -0.46 -12.35 9.04 -37.83 -0.34 -12.69 16 20 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 21 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 22 N -0.80 -20.78 10.96 55.55 0.61 -20.17 16 23 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 28 C -0.11 -2.67 9.92 -39.83 -0.40 -3.06 16 29 C -0.11 -0.82 5.98 -25.09 -0.15 -0.97 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.07 0.45 8.01 -51.93 -0.42 0.03 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 37 H 0.35 3.32 7.71 -39.29 -0.30 3.02 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.37 3.57 9.05 45.56 0.41 3.98 16 41 H 0.05 0.76 7.64 -51.93 -0.40 0.36 16 42 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 43 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 44 H 0.12 3.21 6.16 -52.48 -0.32 2.89 16 45 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 46 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 47 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.63 7.96 -51.93 -0.41 0.22 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -29.00 391.90 -10.87 -39.87 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.58 Total: 10.40 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -3.36 Total: -28.09 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.27 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.75 Total: -14.52 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.00 -10.87 -39.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819249129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.826 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds