Wall clock time and date at job start Tue Mar 31 2020 14:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.67084 * 2 1 4 4 C 1.54889 * 110.75311 * 236.56955 * 2 1 3 5 5 C 1.54263 * 104.19620 * 203.73788 * 4 2 1 6 6 C 1.53881 * 106.59849 * 23.61280 * 5 4 2 7 7 H 1.08998 * 110.02943 * 240.71248 * 6 5 4 8 8 N 1.46894 * 110.03319 * 119.28426 * 6 5 4 9 9 C 1.46895 * 111.00461 * 87.83346 * 8 6 5 10 10 C 1.53000 * 109.47428 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.46995 * 305.00315 * 10 9 8 12 12 O 1.42900 * 109.46965 * 65.00374 * 10 9 8 13 13 C 1.53005 * 109.46984 * 184.99928 * 10 9 8 14 14 O 1.42895 * 109.46998 * 175.00434 * 13 10 9 15 15 C 1.35674 * 117.00489 * 180.02562 * 14 13 10 16 16 C 1.39313 * 119.81238 * 359.71801 * 15 14 13 17 17 C 1.36436 * 120.18482 * 179.76735 * 16 15 14 18 18 C 1.40832 * 119.81231 * 0.50858 * 17 16 15 19 19 C 1.41214 * 120.18295 * 179.72024 * 18 17 16 20 20 H 1.07995 * 120.00090 * 204.57032 * 19 18 17 21 21 C 1.39895 * 119.99844 * 24.57231 * 19 18 17 22 22 N 1.30884 * 119.99800 * 17.91841 * 21 19 18 23 23 Si 1.86797 * 119.99974 * 197.92589 * 21 19 18 24 24 H 1.48491 * 109.47416 * 89.99575 * 23 21 19 25 25 H 1.48502 * 109.46745 * 210.00093 * 23 21 19 26 26 H 1.48507 * 109.46741 * 329.99522 * 23 21 19 27 27 C 1.40831 * 119.63901 * 359.74648 * 18 17 16 28 28 C 1.36442 * 119.81382 * 359.97438 * 27 18 17 29 29 C 1.54262 * 106.59356 * 359.97438 * 6 5 4 30 30 H 1.09002 * 109.46756 * 296.75711 * 1 2 3 31 31 H 1.08993 * 109.47899 * 56.76027 * 1 2 3 32 32 H 1.09002 * 109.47317 * 176.76480 * 1 2 3 33 33 H 1.08996 * 110.48936 * 322.42052 * 4 2 1 34 34 H 1.09004 * 110.48635 * 85.06318 * 4 2 1 35 35 H 1.08993 * 110.03705 * 264.32592 * 5 4 2 36 36 H 1.09001 * 110.07219 * 142.91655 * 5 4 2 37 37 H 1.00901 * 111.00256 * 323.87651 * 8 6 5 38 38 H 1.09007 * 109.47208 * 299.99848 * 9 8 6 39 39 H 1.09000 * 109.47270 * 59.99474 * 9 8 6 40 40 H 0.96699 * 114.00123 * 59.99646 * 12 10 9 41 41 H 1.09003 * 109.47224 * 295.00107 * 13 10 9 42 42 H 1.08994 * 109.46765 * 55.00068 * 13 10 9 43 43 H 1.08004 * 119.90970 * 0.02641 * 16 15 14 44 44 H 1.08008 * 120.09520 * 180.25389 * 17 16 15 45 45 H 0.96996 * 119.99407 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.09856 * 179.97438 * 27 18 17 47 47 H 1.08003 * 119.90679 * 179.97438 * 28 27 18 48 48 H 1.09001 * 110.48351 * 217.70987 * 29 6 5 49 49 H 1.08995 * 110.60007 * 95.13154 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0788 -0.7980 -1.2088 5 6 3.4930 -1.2280 -0.7675 6 6 3.4931 -1.2255 0.7713 7 1 4.2327 -0.5165 1.1434 8 7 3.7882 -2.5729 1.2767 9 6 5.2364 -2.7803 1.4086 10 6 5.5036 -4.1911 1.9369 11 1 4.9566 -4.3401 2.8678 12 8 5.0706 -5.1513 0.9711 13 6 7.0021 -4.3648 2.1923 14 8 7.2382 -5.6392 2.7940 15 6 8.5250 -5.9528 3.0880 16 6 9.5428 -5.0477 2.7949 17 6 10.8389 -5.3533 3.0916 18 6 11.1478 -6.5921 3.6860 19 6 12.4874 -6.9188 3.9910 20 1 12.7877 -7.9536 4.0636 21 6 13.4254 -5.9020 4.1992 22 7 13.0232 -4.6842 4.4604 23 14 15.2517 -6.2824 4.1042 24 1 15.7250 -6.0930 2.7095 25 1 15.9953 -5.3681 5.0078 26 1 15.4867 -7.6885 4.5200 27 6 10.1136 -7.5035 3.9742 28 6 8.8219 -7.1801 3.6763 29 6 2.0792 -0.7934 1.2113 30 1 -0.3633 0.4627 0.9177 31 1 -0.3634 0.5632 -0.8594 32 1 -0.3634 -1.0260 -0.0580 33 1 1.4573 -1.6721 -1.4027 34 1 2.1318 -0.1626 -2.0929 35 1 4.2325 -0.5203 -1.1421 36 1 3.7127 -2.2289 -1.1392 37 1 3.3740 -3.2790 0.6869 38 1 5.7108 -2.6609 0.4345 39 1 5.6464 -2.0484 2.1045 40 1 5.5162 -5.0776 0.1161 41 1 7.5413 -4.3039 1.2469 42 1 7.3504 -3.5773 2.8605 43 1 9.3046 -4.0998 2.3353 44 1 11.6264 -4.6488 2.8674 45 1 13.6736 -3.9791 4.6043 46 1 10.3421 -8.4557 4.4296 47 1 8.0277 -7.8781 3.8963 48 1 2.1325 -0.1552 2.0933 49 1 1.4560 -1.6653 1.4097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819249129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:08 Heat of formation + Delta-G solvation = -109.019186 kcal Electronic energy + Delta-G solvation = -25847.593010 eV Core-core repulsion = 22158.634384 eV Total energy + Delta-G solvation = -3688.958625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.69875 -39.94002 -38.80161 -37.66506 -35.37409 -35.20326 -32.14340 -31.54096 -31.16285 -30.40733 -28.98667 -26.89392 -25.94470 -24.84239 -23.32055 -22.58737 -22.07473 -21.05201 -20.81043 -19.27893 -18.70017 -17.85976 -17.51196 -17.04700 -16.80262 -16.48387 -15.84847 -15.81651 -15.61193 -15.22990 -14.91180 -14.62005 -14.48489 -14.30288 -14.20583 -13.83338 -13.78521 -13.49807 -13.40151 -13.22109 -12.98437 -12.77626 -12.71557 -12.40557 -12.31997 -12.15703 -11.92485 -11.80259 -11.68440 -11.61412 -11.60099 -11.41380 -11.40440 -11.21422 -10.95781 -10.87754 -9.58036 -9.34086 -8.92216 -8.60934 -6.23434 0.92566 1.03452 1.39451 1.52136 1.52470 2.22502 2.37774 2.71381 3.22579 3.44023 3.65140 3.69328 3.73014 3.91420 4.00189 4.02146 4.07445 4.27952 4.31720 4.36236 4.37863 4.42782 4.47118 4.56634 4.65992 4.69443 4.71956 4.79698 4.87353 4.89460 4.98538 5.04644 5.05502 5.13184 5.14418 5.14954 5.21213 5.35301 5.36195 5.38688 5.51342 5.57506 5.65264 5.96069 6.05290 6.09873 6.22908 6.44449 6.55267 6.75186 6.80065 6.94401 7.09356 8.36013 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.001886 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.053952 B =14841.411461 C =15427.556522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.151 4.151 6 C 0.081 3.919 7 H 0.076 0.924 8 N -0.684 5.684 9 C 0.042 3.958 10 C 0.125 3.875 11 H 0.099 0.901 12 O -0.565 6.565 13 C 0.032 3.968 14 O -0.329 6.329 15 C -0.002 4.002 16 C -0.176 4.176 17 C -0.154 4.154 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.076 0.924 21 C 0.034 3.966 22 N -0.831 5.831 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.205 4.205 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.349 0.651 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.384 0.616 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.287 0.713 46 H 0.109 0.891 47 H 0.117 0.883 48 H 0.064 0.936 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 11.412 -10.800 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.191 4.191 6 C -0.028 4.028 7 H 0.094 0.906 8 N -0.316 5.316 9 C -0.088 4.088 10 C 0.065 3.935 11 H 0.117 0.883 12 O -0.371 6.371 13 C -0.045 4.045 14 O -0.244 6.244 15 C -0.045 4.045 16 C -0.194 4.194 17 C -0.174 4.174 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.094 0.906 21 C -0.180 4.180 22 N -0.458 5.458 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.224 4.224 28 C -0.142 4.142 29 C -0.144 4.144 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.169 0.831 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.233 0.767 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.135 0.865 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.700 11.509 -9.543 23.942 hybrid contribution 1.784 0.171 -1.143 2.126 sum -16.917 11.680 -10.686 23.169 Atomic orbital electron populations 1.21738 0.94397 1.01872 1.01941 1.22109 0.95951 0.99057 0.94526 0.90460 1.22372 0.95291 0.99804 0.97857 1.22879 0.98288 1.01614 0.96273 1.22288 0.97965 0.89927 0.92660 0.90593 1.60457 1.10318 1.04281 1.56579 1.22413 0.89901 0.95713 1.00724 1.21808 0.90557 0.88038 0.93057 0.88315 1.86607 1.66807 1.57563 1.26134 1.23456 0.98157 0.84910 0.97971 1.85862 1.24007 1.36560 1.78017 1.18723 0.82664 0.96165 1.06992 1.20808 0.93453 0.99274 1.05895 1.20918 0.95153 0.98980 1.02355 1.17972 0.93748 0.92366 0.90819 1.19723 0.93988 0.94552 1.44651 0.90629 1.26728 1.06008 0.94060 0.91205 1.69891 1.38514 1.03095 1.34327 0.85196 0.75784 0.79464 0.79205 1.18727 1.19360 1.18274 1.20798 0.91977 1.01418 1.08246 1.19901 0.96422 0.95161 1.02668 1.22394 0.94794 0.99586 0.97621 0.92501 0.92157 0.92804 0.91623 0.91238 0.91494 0.91877 0.83120 0.93323 0.89658 0.76727 0.91853 0.91891 0.86334 0.87458 0.90236 0.87265 0.86479 0.91756 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.28 71.98 0.67 -0.80 16 2 C -0.10 -1.13 3.49 -9.51 -0.03 -1.16 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.32 6.28 31.67 0.20 -1.12 16 5 C -0.15 -1.92 6.43 31.32 0.20 -1.72 16 6 C 0.08 1.21 3.23 45.64 0.15 1.36 16 7 H 0.08 1.17 7.81 -2.39 -0.02 1.15 16 8 N -0.68 -12.00 6.22 -487.85 -3.03 -15.03 16 9 C 0.04 0.76 5.18 86.30 0.45 1.21 16 10 C 0.13 2.99 3.49 30.60 0.11 3.10 16 11 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 12 O -0.56 -13.72 12.82 -144.34 -1.85 -15.57 16 13 C 0.03 0.93 4.36 71.98 0.31 1.25 16 14 O -0.33 -13.19 10.09 -85.27 -0.86 -14.05 16 15 C 0.00 -0.07 6.71 22.79 0.15 0.08 16 16 C -0.18 -8.20 8.96 22.11 0.20 -8.01 16 17 C -0.15 -8.19 8.64 22.48 0.19 -8.00 16 18 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 19 C -0.50 -27.24 9.04 23.40 0.21 -27.02 16 20 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 21 C 0.03 1.71 5.13 85.24 0.44 2.15 16 22 N -0.83 -43.70 10.96 21.82 0.24 -43.46 16 23 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 27 C -0.20 -10.36 9.74 22.48 0.22 -10.14 16 28 C -0.12 -5.79 9.92 22.11 0.22 -5.57 16 29 C -0.11 -1.49 5.98 31.66 0.19 -1.30 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.58 8.09 -2.39 -0.02 0.56 16 33 H 0.07 0.77 8.01 -2.39 -0.02 0.75 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.83 7.56 -2.39 -0.02 0.81 16 37 H 0.35 6.13 7.71 -89.69 -0.69 5.44 16 38 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 40 H 0.38 6.61 9.05 -74.06 -0.67 5.94 16 41 H 0.06 1.74 7.64 -2.39 -0.02 1.72 16 42 H 0.06 1.84 7.66 -2.39 -0.02 1.82 16 43 H 0.12 4.77 6.27 -2.91 -0.02 4.75 16 44 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 45 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 46 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 47 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 Total: -1.00 -62.18 391.90 -0.14 -62.32 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.42 Total: 38.28 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 3.75 Total: -52.91 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -2.79 Total: -58.50 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -2.71 Total: -29.62 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -62.18 -0.14 -62.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819249129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.699 kcal (2) G-P(sol) polarization free energy of solvation -62.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds