Wall clock time and date at job start Tue Mar 31 2020 12:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47492 * 2 1 4 4 N 1.46500 * 109.46980 * 120.00497 * 2 1 3 5 5 C 1.46494 * 119.99974 * 299.99380 * 4 2 1 6 6 C 1.50699 * 109.47378 * 269.99978 * 5 4 2 7 7 H 1.08002 * 119.99894 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99995 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00403 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99679 * 180.02562 * 8 6 5 11 11 H 1.48489 * 109.47278 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47098 * 120.00741 * 10 8 6 13 13 H 1.48504 * 109.47100 * 240.00025 * 10 8 6 14 14 C 1.34779 * 120.00105 * 119.99599 * 4 2 1 15 15 O 1.21281 * 120.00109 * 179.97438 * 14 4 2 16 16 C 1.50702 * 119.99840 * 0.02562 * 14 4 2 17 17 C 1.53000 * 109.46740 * 179.97438 * 16 14 4 18 18 C 1.53002 * 109.46876 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.47338 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47269 * 305.00414 * 19 18 17 21 21 O 1.42903 * 109.46459 * 65.00307 * 19 18 17 22 22 C 1.50696 * 109.47222 * 184.99973 * 19 18 17 23 23 C 1.38234 * 120.00111 * 279.72695 * 22 19 18 24 24 C 1.38238 * 119.99829 * 179.78647 * 23 22 19 25 25 C 1.38239 * 119.99904 * 0.44948 * 24 23 22 26 26 C 1.38233 * 119.99728 * 359.80521 * 25 24 23 27 27 C 1.38229 * 120.00465 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46598 * 300.00057 * 1 2 3 29 29 H 1.09003 * 109.47126 * 59.99539 * 1 2 3 30 30 H 1.08997 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46598 * 239.99943 * 2 1 3 32 32 H 1.08997 * 109.47632 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47312 * 300.00347 * 3 2 1 34 34 H 1.09000 * 109.47246 * 60.00339 * 3 2 1 35 35 H 1.08996 * 109.47358 * 30.00455 * 5 4 2 36 36 H 1.09002 * 109.47120 * 150.00247 * 5 4 2 37 37 H 0.96999 * 120.00427 * 179.97438 * 9 8 6 38 38 H 1.08992 * 109.47506 * 59.99717 * 16 14 4 39 39 H 1.08999 * 109.46876 * 299.99632 * 16 14 4 40 40 H 1.09005 * 109.47575 * 60.00253 * 17 16 14 41 41 H 1.08999 * 109.47254 * 299.99546 * 17 16 14 42 42 H 1.09005 * 109.46934 * 60.00280 * 18 17 16 43 43 H 1.08999 * 109.47130 * 300.00016 * 18 17 16 44 44 H 0.96700 * 114.00311 * 60.00313 * 21 19 18 45 45 H 1.07998 * 120.00194 * 0.02562 * 23 22 19 46 46 H 1.08003 * 120.00038 * 180.27175 * 24 23 22 47 47 H 1.08001 * 119.99802 * 179.83174 * 25 24 23 48 48 H 1.08004 * 119.99346 * 180.02562 * 26 25 24 49 49 H 1.07997 * 120.00005 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7033 0.8015 2.9830 7 1 3.5429 1.0360 2.3454 8 6 2.5813 1.4104 4.2140 9 7 1.5587 1.1254 4.9902 10 14 3.8687 2.6404 4.7792 11 1 4.9095 2.7850 3.7301 12 1 3.2238 3.9561 5.0209 13 1 4.4957 2.1583 6.0361 14 6 2.7931 -1.7866 1.0724 15 8 3.1977 -2.3581 2.0626 16 6 3.1576 -2.3011 -0.2964 17 6 4.0376 -3.5448 -0.1560 18 6 4.4071 -4.0675 -1.5457 19 6 5.2876 -5.3109 -1.4054 20 1 6.1526 -5.0755 -0.7854 21 8 4.5350 -6.3609 -0.7944 22 6 5.7523 -5.7537 -2.7688 23 6 4.9102 -6.4905 -3.5805 24 6 5.3350 -6.8930 -4.8329 25 6 6.6052 -6.5665 -5.2699 26 6 7.4491 -5.8343 -4.4560 27 6 7.0228 -5.4279 -3.2055 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6769 1.9562 0.8900 35 1 0.6906 0.2972 2.4844 36 1 1.6239 -1.0228 3.2291 37 1 1.4731 1.5535 5.8564 38 1 3.7028 -1.5303 -0.8410 39 1 2.2494 -2.5577 -0.8417 40 1 3.4927 -4.3159 0.3887 41 1 4.9457 -3.2877 0.3892 42 1 4.9519 -3.2966 -2.0908 43 1 3.4988 -4.3247 -2.0905 44 1 3.7488 -6.6227 -1.2928 45 1 3.9191 -6.7484 -3.2378 46 1 4.6755 -7.4648 -5.4689 47 1 6.9380 -6.8833 -6.2473 48 1 8.4414 -5.5789 -4.7977 49 1 7.6823 -4.8562 -2.5695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825044451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:45 Heat of formation + Delta-G solvation = -104.708168 kcal Electronic energy + Delta-G solvation = -26579.043250 eV Core-core repulsion = 22890.271564 eV Total energy + Delta-G solvation = -3688.771686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.90608 -40.49957 -38.16122 -37.53981 -35.20145 -34.74984 -32.56760 -32.38913 -31.72249 -30.33430 -28.71346 -27.95113 -25.91823 -24.50787 -23.48916 -22.80835 -22.17501 -21.83731 -19.43693 -18.60882 -18.52052 -18.02040 -17.10344 -16.95693 -16.73972 -16.40623 -16.18627 -15.83467 -15.34703 -14.91816 -14.83646 -14.67087 -14.63650 -14.22572 -14.13861 -13.86599 -13.79365 -13.38885 -13.28569 -12.94565 -12.88135 -12.79546 -12.67738 -12.65721 -12.52020 -12.39328 -12.20535 -12.07670 -11.97455 -11.74984 -11.60547 -11.57479 -11.48532 -10.97227 -10.62107 -10.47947 -9.80546 -9.62227 -9.38462 -8.19591 -6.31498 0.42597 0.51599 1.34112 1.36761 1.48010 1.90503 2.32860 2.47565 2.86234 3.09773 3.51512 3.61225 3.78620 3.92896 3.97041 4.05629 4.10814 4.18585 4.30097 4.31532 4.38169 4.41066 4.45389 4.62078 4.65062 4.69676 4.77487 4.86788 4.89041 4.91517 4.96786 5.04988 5.07991 5.09667 5.13859 5.17073 5.26279 5.30319 5.45050 5.47440 5.58064 5.59265 5.64273 5.65757 5.69463 5.92620 6.12268 6.12341 6.75406 6.81767 6.89185 7.32569 7.56655 8.87853 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.002425 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.332767 B =11542.699585 C =11934.240457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.152 4.152 4 N -0.601 5.601 5 C 0.263 3.737 6 C -0.522 4.522 7 H 0.053 0.947 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.285 1.285 14 C 0.488 3.512 15 O -0.603 6.603 16 C -0.125 4.125 17 C -0.093 4.093 18 C -0.129 4.129 19 C 0.148 3.852 20 H 0.093 0.907 21 O -0.571 6.571 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.128 4.128 27 C -0.128 4.128 28 H 0.035 0.965 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.024 0.976 36 H -0.012 1.012 37 H 0.265 0.735 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.385 0.615 45 H 0.137 0.863 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -11.358 -26.273 29.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 C -0.210 4.210 4 N -0.332 5.332 5 C 0.141 3.859 6 C -0.561 4.561 7 H 0.071 0.929 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.211 1.211 14 C 0.278 3.722 15 O -0.485 6.485 16 C -0.164 4.164 17 C -0.132 4.132 18 C -0.166 4.166 19 C 0.089 3.911 20 H 0.111 0.889 21 O -0.379 6.379 22 C -0.123 4.123 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.146 4.146 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.006 0.994 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.235 0.765 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.156 0.844 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.596 -11.536 -25.160 28.238 hybrid contribution 0.122 0.712 0.971 1.210 sum 5.718 -10.824 -24.189 27.110 Atomic orbital electron populations 1.22127 0.94441 1.02211 1.02693 1.21426 0.95103 0.93938 0.87277 1.22084 1.00604 0.95998 1.02357 1.48426 1.49453 1.27111 1.08169 1.18621 0.95202 0.92493 0.79585 1.21680 1.08862 1.23344 1.02210 0.92888 1.25834 0.97877 0.99227 0.96582 1.70061 1.31354 1.44669 1.11103 0.85447 0.79077 0.78728 0.78059 1.19068 1.19530 1.21085 1.21631 0.77777 0.80006 0.92776 1.90637 1.55431 1.59875 1.42586 1.21725 1.02863 0.99464 0.92375 1.21173 0.98839 0.95819 0.97333 1.22183 1.00906 0.97486 0.96068 1.20804 0.94105 0.86414 0.89786 0.88912 1.86640 1.42973 1.55520 1.52758 1.20616 0.95322 0.99514 0.96856 1.21151 1.00196 0.98139 0.94453 1.21449 0.96778 0.99914 0.96136 1.21513 0.94288 0.98343 1.00629 1.21429 1.00730 0.98285 0.94103 1.21246 0.95641 1.00507 0.97189 0.94601 0.88390 0.92429 0.86298 0.93837 0.89110 0.94015 0.95784 0.99396 0.92659 0.87134 0.86324 0.92819 0.93835 0.89650 0.89330 0.76504 0.84542 0.84000 0.84138 0.84419 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 9.17 71.98 0.66 -3.60 16 2 C 0.12 3.78 3.17 44.99 0.14 3.92 16 3 C -0.15 -4.75 8.47 71.98 0.61 -4.14 16 4 N -0.60 -25.59 2.39 -802.17 -1.91 -27.50 16 5 C 0.26 14.40 4.59 85.63 0.39 14.80 16 6 C -0.52 -30.31 7.83 25.60 0.20 -30.11 16 7 H 0.05 3.06 7.63 -2.91 -0.02 3.03 16 8 C 0.00 0.17 5.46 84.66 0.46 0.63 16 9 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 10 Si 0.96 45.94 29.54 68.60 2.03 47.96 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 13 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 14 C 0.49 20.59 7.67 87.66 0.67 21.26 16 15 O -0.60 -32.50 15.56 -3.03 -0.05 -32.54 16 16 C -0.12 -3.32 4.01 29.85 0.12 -3.20 16 17 C -0.09 -2.50 4.40 30.59 0.13 -2.36 16 18 C -0.13 -2.27 4.87 30.60 0.15 -2.12 16 19 C 0.15 2.85 3.21 29.85 0.10 2.95 16 20 H 0.09 2.02 8.00 -2.39 -0.02 2.00 16 21 O -0.57 -12.30 12.72 -148.98 -1.90 -14.19 16 22 C -0.12 -2.09 4.97 -19.87 -0.10 -2.19 16 23 C -0.12 -1.73 9.32 22.27 0.21 -1.52 16 24 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 25 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 26 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 27 C -0.13 -2.11 9.67 22.27 0.22 -1.90 16 28 H 0.03 1.20 6.66 -2.39 -0.02 1.18 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.12 2.59 5.77 -2.39 -0.01 2.57 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.62 6.92 -2.39 -0.02 1.61 16 35 H 0.02 1.35 6.43 -2.39 -0.02 1.33 16 36 H -0.01 -0.78 7.42 -2.39 -0.02 -0.80 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.11 2.42 7.79 -2.39 -0.02 2.41 16 39 H 0.12 2.36 7.79 -2.39 -0.02 2.34 16 40 H 0.05 1.67 7.78 -2.38 -0.02 1.65 16 41 H 0.04 1.37 8.10 -2.39 -0.02 1.36 16 42 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.39 5.26 7.50 -74.06 -0.56 4.71 16 45 H 0.14 1.35 6.78 -2.91 -0.02 1.33 16 46 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 47 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 49 H 0.13 1.88 8.04 -2.91 -0.02 1.86 16 Total: -1.00 -80.93 395.71 3.46 -77.47 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.37 Total: 18.00 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 4.64 Total: -11.92 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -1.63 Total: -84.78 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.94 Total: -46.74 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -80.93 3.46 -77.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825044451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.239 kcal (2) G-P(sol) polarization free energy of solvation -80.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds