Wall clock time and date at job start Tue Mar 31 2020 12:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 H 1.08997 * 109.47470 * 54.99363 * 3 2 1 5 5 N 1.46501 * 109.47055 * 294.99661 * 3 2 1 6 6 C 1.34784 * 119.99968 * 84.99677 * 5 3 2 7 7 O 1.21280 * 119.99871 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99906 * 180.02562 * 6 5 3 9 9 C 1.50700 * 109.46813 * 180.02562 * 8 6 5 10 10 C 1.37640 * 120.13180 * 265.30632 * 9 8 6 11 11 C 1.38613 * 120.24862 * 180.32332 * 10 9 8 12 12 C 1.38655 * 120.50174 * 359.67182 * 11 10 9 13 13 C 1.37598 * 120.24576 * 359.97438 * 12 11 10 14 14 C 1.40702 * 120.12495 * 85.00356 * 9 8 6 15 15 C 1.41393 * 120.24620 * 359.97406 * 14 9 8 16 16 H 1.07999 * 119.99787 * 29.07372 * 15 14 9 17 17 C 1.39938 * 120.00244 * 209.07592 * 15 14 9 18 18 N 1.30823 * 120.00241 * 197.10039 * 17 15 14 19 19 Si 1.86803 * 119.99882 * 17.09514 * 17 15 14 20 20 H 1.48495 * 109.47432 * 270.00073 * 19 17 15 21 21 H 1.48498 * 109.46929 * 30.00589 * 19 17 15 22 22 H 1.48504 * 109.46998 * 150.00206 * 19 17 15 23 23 C 1.52996 * 109.47347 * 174.99994 * 3 2 1 24 24 H 1.09002 * 109.47030 * 174.99606 * 23 3 2 25 25 O 1.42899 * 109.47346 * 54.99836 * 23 3 2 26 26 C 1.52996 * 109.46907 * 294.99504 * 23 3 2 27 27 C 1.53006 * 109.47254 * 179.97438 * 26 23 3 28 28 C 1.52998 * 109.47729 * 299.99961 * 26 23 3 29 29 H 1.09002 * 109.47392 * 300.00246 * 1 2 3 30 30 H 1.09000 * 109.47376 * 60.00693 * 1 2 3 31 31 H 1.09003 * 109.46922 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47481 * 239.99291 * 2 1 3 33 33 H 1.09000 * 109.47376 * 119.99307 * 2 1 3 34 34 H 0.96998 * 120.00101 * 265.00491 * 5 3 2 35 35 H 1.08999 * 109.47299 * 60.00523 * 8 6 5 36 36 H 1.08998 * 109.47401 * 299.99992 * 8 6 5 37 37 H 1.08005 * 119.87130 * 0.02562 * 10 9 8 38 38 H 1.08001 * 119.74473 * 179.69460 * 11 10 9 39 39 H 1.08002 * 119.87493 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.12022 * 180.02562 * 13 12 11 41 41 H 0.97004 * 119.99819 * 355.45620 * 18 17 15 42 42 H 0.96705 * 113.99907 * 300.00234 * 25 23 3 43 43 H 1.09002 * 109.47192 * 60.00201 * 26 23 3 44 44 H 1.09002 * 109.46739 * 60.00068 * 27 26 23 45 45 H 1.08999 * 109.47060 * 179.97438 * 27 26 23 46 46 H 1.08994 * 109.46966 * 300.00436 * 27 26 23 47 47 H 1.08997 * 109.47638 * 179.97438 * 28 26 23 48 48 H 1.09002 * 109.46979 * 300.00371 * 28 26 23 49 49 H 1.09004 * 109.46796 * 59.99554 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3671 7 8 -0.3393 2.6326 -0.4343 8 6 0.0363 3.3375 -2.6550 9 6 -1.3612 3.8860 -2.5233 10 6 -2.4379 3.1447 -2.9543 11 6 -3.7237 3.6497 -2.8404 12 6 -3.9416 4.9018 -2.2861 13 6 -2.8808 5.6573 -1.8420 14 6 -1.5708 5.1553 -1.9534 15 6 -0.4730 5.9229 -1.5008 16 1 0.4935 5.8117 -1.9697 17 6 -0.6388 6.8266 -0.4453 18 7 0.2505 7.7640 -0.2409 19 14 -2.1303 6.6945 0.6717 20 1 -3.2360 7.5185 0.1207 21 1 -2.5631 5.2764 0.7539 22 1 -1.7772 7.1837 2.0287 23 6 3.5648 1.4444 0.1257 24 1 3.9354 2.4655 0.0365 25 8 4.1293 0.6404 -0.9121 26 6 3.9648 0.8737 1.4877 27 6 5.4897 0.8750 1.6133 28 6 3.3605 1.7345 2.5989 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.2720 2.1230 -1.9978 35 1 0.0673 2.6128 -3.4686 36 1 0.7276 4.1528 -2.8681 37 1 -2.2797 2.1680 -3.3872 38 1 -4.5623 3.0631 -3.1857 39 1 -4.9478 5.2852 -2.2019 40 1 -3.0529 6.6322 -1.4102 41 1 1.0573 7.7926 -0.7786 42 1 3.8427 -0.2830 -0.8943 43 1 3.5942 -0.1475 1.5769 44 1 5.8608 1.8960 1.5239 45 1 5.7747 0.4689 2.5838 46 1 5.9199 0.2615 0.8217 47 1 3.6451 1.3277 3.5692 48 1 3.7311 2.7557 2.5097 49 1 2.2741 1.7332 2.5093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839870071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:37 Heat of formation + Delta-G solvation = -95.847947 kcal Electronic energy + Delta-G solvation = -28263.153609 eV Core-core repulsion = 24574.766131 eV Total energy + Delta-G solvation = -3688.387477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.05349 -38.55751 -37.42839 -34.53015 -34.36580 -33.62330 -32.33918 -31.42459 -30.11338 -28.44387 -27.15598 -26.53925 -24.50761 -23.78644 -22.02685 -21.29868 -20.25491 -19.97675 -19.20877 -18.05166 -17.05890 -16.49282 -16.01364 -15.54788 -15.38343 -15.11633 -14.59510 -14.40842 -14.06464 -13.73386 -13.68194 -13.30775 -13.09787 -12.80332 -12.59632 -12.45092 -12.31229 -12.19106 -12.04874 -11.93935 -11.85287 -11.51547 -11.37558 -11.22052 -11.15712 -11.03596 -10.75997 -10.65477 -10.49066 -10.26665 -10.11634 -9.95797 -9.66461 -9.22576 -9.08598 -8.92569 -8.57050 -7.61617 -7.54182 -7.13962 -4.45450 2.63212 2.79339 3.28666 3.38885 3.45783 3.59959 3.69501 4.12828 4.22134 4.50991 4.62031 4.67240 4.72552 4.98742 5.08884 5.16323 5.31885 5.37476 5.47864 5.50149 5.60136 5.66258 5.69752 5.76887 5.80226 5.85938 5.91448 5.96727 6.02340 6.07110 6.11495 6.11822 6.22287 6.24430 6.28192 6.31494 6.59273 6.62934 6.79017 6.89767 7.10804 7.40472 7.42702 7.55982 7.71439 7.76112 7.89799 8.02963 8.06447 8.45246 8.64943 8.85738 8.93939 10.11671 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.004381 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.405914 B = 6389.756956 C = 7400.500194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.112 3.888 4 H 0.098 0.902 5 N -0.735 5.735 6 C 0.519 3.481 7 O -0.513 6.513 8 C -0.072 4.072 9 C -0.168 4.168 10 C -0.068 4.068 11 C -0.245 4.245 12 C -0.077 4.077 13 C -0.245 4.245 14 C 0.116 3.884 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.047 3.953 18 N -0.824 5.824 19 Si 1.070 2.930 20 H -0.280 1.280 21 H -0.258 1.258 22 H -0.294 1.294 23 C 0.103 3.897 24 H 0.104 0.896 25 O -0.558 6.558 26 C -0.124 4.124 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.397 0.603 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.283 0.717 42 H 0.371 0.629 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -14.013 1.449 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.006 3.994 4 H 0.116 0.884 5 N -0.390 5.390 6 C 0.306 3.694 7 O -0.386 6.386 8 C -0.112 4.112 9 C -0.170 4.170 10 C -0.087 4.087 11 C -0.264 4.264 12 C -0.095 4.095 13 C -0.264 4.264 14 C 0.113 3.887 15 C -0.541 4.541 16 H 0.092 0.908 17 C -0.171 4.171 18 N -0.447 5.447 19 Si 0.897 3.103 20 H -0.207 1.207 21 H -0.182 1.182 22 H -0.221 1.221 23 C 0.044 3.956 24 H 0.122 0.878 25 O -0.363 6.363 26 C -0.143 4.143 27 C -0.200 4.200 28 C -0.212 4.212 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.219 0.781 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.900 -12.675 3.258 14.794 hybrid contribution 0.927 -1.117 -1.521 2.103 sum 7.827 -13.792 1.738 15.953 Atomic orbital electron populations 1.21771 0.94258 1.00147 1.03874 1.21996 0.97973 0.96318 1.01312 1.21670 0.94365 0.93783 0.89542 0.88386 1.46057 1.17521 1.59462 1.15925 1.20914 0.80650 0.77183 0.90607 1.90680 1.50923 1.56813 1.40214 1.20269 0.97512 0.99432 0.93974 1.19018 0.91751 0.95511 1.10697 1.20410 0.92862 0.96941 0.98461 1.20317 0.95557 0.98140 1.12426 1.20597 0.96949 0.94533 0.97406 1.21121 0.93500 1.00555 1.11234 1.17497 0.92416 0.89955 0.88839 1.20515 0.97180 1.20254 1.16156 0.90785 1.27132 1.03253 0.89467 0.97244 1.70571 1.08970 1.25500 1.39701 0.83644 0.73430 0.78740 0.74461 1.20705 1.18215 1.22137 1.22307 0.91169 0.95684 0.86441 0.87773 1.86572 1.72275 1.24758 1.52737 1.21801 0.96903 1.00419 0.95215 1.21757 0.94516 1.02236 1.01446 1.21913 1.01503 1.00022 0.97716 0.92075 0.91837 0.94048 0.92091 0.91491 0.76868 0.90689 0.89085 0.89303 0.89085 0.88946 0.87853 0.90632 0.78073 0.90609 0.92641 0.92824 0.92108 0.92357 0.92198 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.51 37.16 0.32 -1.73 16 2 C -0.14 -1.54 4.89 -26.73 -0.13 -1.67 16 3 C 0.11 1.44 1.91 -67.93 -0.13 1.31 16 4 H 0.10 1.53 5.61 -51.93 -0.29 1.24 16 5 N -0.74 -10.81 5.01 -53.81 -0.27 -11.08 16 6 C 0.52 9.92 6.39 -10.98 -0.07 9.85 16 7 O -0.51 -11.77 13.17 5.56 0.07 -11.69 16 8 C -0.07 -1.39 5.36 -29.03 -0.16 -1.54 16 9 C -0.17 -3.89 4.43 -103.91 -0.46 -4.35 16 10 C -0.07 -1.49 9.66 -39.66 -0.38 -1.87 16 11 C -0.25 -5.33 10.05 -39.29 -0.39 -5.72 16 12 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 13 C -0.25 -6.16 7.26 -38.87 -0.28 -6.44 16 14 C 0.12 2.99 5.13 -106.83 -0.55 2.44 16 15 C -0.51 -13.76 8.80 -37.75 -0.33 -14.10 16 16 H 0.07 2.00 6.60 -52.49 -0.35 1.65 16 17 C 0.05 1.29 5.42 -17.34 -0.09 1.19 16 18 N -0.82 -22.66 13.65 55.55 0.76 -21.90 16 19 Si 1.07 26.17 24.89 -169.99 -4.23 21.94 16 20 H -0.28 -6.45 6.45 56.52 0.36 -6.08 16 21 H -0.26 -6.56 7.01 56.52 0.40 -6.16 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.10 1.10 2.45 -26.74 -0.07 1.04 16 24 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 25 O -0.56 -5.53 12.30 -35.23 -0.43 -5.96 16 26 C -0.12 -1.13 2.45 -90.62 -0.22 -1.35 16 27 C -0.14 -1.21 9.05 37.16 0.34 -0.87 16 28 C -0.15 -1.54 8.85 37.16 0.33 -1.21 16 29 H 0.06 0.98 7.85 -51.93 -0.41 0.58 16 30 H 0.06 1.07 5.65 -51.93 -0.29 0.78 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.60 7.00 -51.93 -0.36 0.24 16 33 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 34 H 0.40 5.07 8.38 -40.82 -0.34 4.73 16 35 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.09 1.77 6.51 -51.93 -0.34 1.43 16 37 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.10 2.59 4.43 -52.48 -0.23 2.36 16 41 H 0.28 7.51 8.73 -40.82 -0.36 7.16 16 42 H 0.37 2.68 7.31 45.56 0.33 3.02 16 43 H 0.08 0.62 6.46 -51.93 -0.34 0.28 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -30.54 376.20 -8.21 -38.74 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -7.09 Total: 11.47 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -2.68 Total: -27.18 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.49 Total: -32.99 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.36 Total: -17.66 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -4.23 Total: 21.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.54 -8.21 -38.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839870071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.103 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds