Wall clock time and date at job start Tue Mar 31 2020 12:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 H 1.08997 * 109.47470 * 54.99363 * 3 2 1 5 5 N 1.46501 * 109.47055 * 294.99661 * 3 2 1 6 6 C 1.34784 * 119.99968 * 84.99677 * 5 3 2 7 7 O 1.21280 * 119.99871 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99906 * 180.02562 * 6 5 3 9 9 C 1.50700 * 109.46813 * 180.02562 * 8 6 5 10 10 C 1.37640 * 120.13180 * 265.30632 * 9 8 6 11 11 C 1.38613 * 120.24862 * 180.32332 * 10 9 8 12 12 C 1.38655 * 120.50174 * 359.67182 * 11 10 9 13 13 C 1.37598 * 120.24576 * 359.97438 * 12 11 10 14 14 C 1.40702 * 120.12495 * 85.00356 * 9 8 6 15 15 C 1.41393 * 120.24620 * 359.97406 * 14 9 8 16 16 H 1.07999 * 119.99787 * 29.07372 * 15 14 9 17 17 C 1.39938 * 120.00244 * 209.07592 * 15 14 9 18 18 N 1.30823 * 120.00241 * 197.10039 * 17 15 14 19 19 Si 1.86803 * 119.99882 * 17.09514 * 17 15 14 20 20 H 1.48495 * 109.47432 * 270.00073 * 19 17 15 21 21 H 1.48498 * 109.46929 * 30.00589 * 19 17 15 22 22 H 1.48504 * 109.46998 * 150.00206 * 19 17 15 23 23 C 1.52996 * 109.47347 * 174.99994 * 3 2 1 24 24 H 1.09002 * 109.47030 * 174.99606 * 23 3 2 25 25 O 1.42899 * 109.47346 * 54.99836 * 23 3 2 26 26 C 1.52996 * 109.46907 * 294.99504 * 23 3 2 27 27 C 1.53006 * 109.47254 * 179.97438 * 26 23 3 28 28 C 1.52998 * 109.47729 * 299.99961 * 26 23 3 29 29 H 1.09002 * 109.47392 * 300.00246 * 1 2 3 30 30 H 1.09000 * 109.47376 * 60.00693 * 1 2 3 31 31 H 1.09003 * 109.46922 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47481 * 239.99291 * 2 1 3 33 33 H 1.09000 * 109.47376 * 119.99307 * 2 1 3 34 34 H 0.96998 * 120.00101 * 265.00491 * 5 3 2 35 35 H 1.08999 * 109.47299 * 60.00523 * 8 6 5 36 36 H 1.08998 * 109.47401 * 299.99992 * 8 6 5 37 37 H 1.08005 * 119.87130 * 0.02562 * 10 9 8 38 38 H 1.08001 * 119.74473 * 179.69460 * 11 10 9 39 39 H 1.08002 * 119.87493 * 180.02562 * 12 11 10 40 40 H 1.08003 * 120.12022 * 180.02562 * 13 12 11 41 41 H 0.97004 * 119.99819 * 355.45620 * 18 17 15 42 42 H 0.96705 * 113.99907 * 300.00234 * 25 23 3 43 43 H 1.09002 * 109.47192 * 60.00201 * 26 23 3 44 44 H 1.09002 * 109.46739 * 60.00068 * 27 26 23 45 45 H 1.08999 * 109.47060 * 179.97438 * 27 26 23 46 46 H 1.08994 * 109.46966 * 300.00436 * 27 26 23 47 47 H 1.08997 * 109.47638 * 179.97438 * 28 26 23 48 48 H 1.09002 * 109.46979 * 300.00371 * 28 26 23 49 49 H 1.09004 * 109.46796 * 59.99554 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3671 7 8 -0.3393 2.6326 -0.4343 8 6 0.0363 3.3375 -2.6550 9 6 -1.3612 3.8860 -2.5233 10 6 -2.4379 3.1447 -2.9543 11 6 -3.7237 3.6497 -2.8404 12 6 -3.9416 4.9018 -2.2861 13 6 -2.8808 5.6573 -1.8420 14 6 -1.5708 5.1553 -1.9534 15 6 -0.4730 5.9229 -1.5008 16 1 0.4935 5.8117 -1.9697 17 6 -0.6388 6.8266 -0.4453 18 7 0.2505 7.7640 -0.2409 19 14 -2.1303 6.6945 0.6717 20 1 -3.2360 7.5185 0.1207 21 1 -2.5631 5.2764 0.7539 22 1 -1.7772 7.1837 2.0287 23 6 3.5648 1.4444 0.1257 24 1 3.9354 2.4655 0.0365 25 8 4.1293 0.6404 -0.9121 26 6 3.9648 0.8737 1.4877 27 6 5.4897 0.8750 1.6133 28 6 3.3605 1.7345 2.5989 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.2720 2.1230 -1.9978 35 1 0.0673 2.6128 -3.4686 36 1 0.7276 4.1528 -2.8681 37 1 -2.2797 2.1680 -3.3872 38 1 -4.5623 3.0631 -3.1857 39 1 -4.9478 5.2852 -2.2019 40 1 -3.0529 6.6322 -1.4102 41 1 1.0573 7.7926 -0.7786 42 1 3.8427 -0.2830 -0.8943 43 1 3.5942 -0.1475 1.5769 44 1 5.8608 1.8960 1.5239 45 1 5.7747 0.4689 2.5838 46 1 5.9199 0.2615 0.8217 47 1 3.6451 1.3277 3.5692 48 1 3.7311 2.7557 2.5097 49 1 2.2741 1.7332 2.5093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839870071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:36 Heat of formation + Delta-G solvation = -116.290991 kcal Electronic energy + Delta-G solvation = -28264.040086 eV Core-core repulsion = 24574.766131 eV Total energy + Delta-G solvation = -3689.273954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.29332 -39.95048 -38.97884 -35.68704 -35.59491 -35.17071 -33.80778 -32.85603 -32.00007 -29.58004 -28.29531 -27.72283 -26.36891 -24.79377 -23.35660 -22.91692 -21.71278 -21.09598 -20.64208 -20.00866 -18.13520 -17.78909 -17.25703 -16.84236 -16.79550 -16.37865 -16.08688 -15.82720 -15.59563 -15.32029 -14.93813 -14.65655 -14.36243 -14.23432 -13.90613 -13.83382 -13.63589 -13.45322 -13.21819 -13.08395 -13.04575 -12.82873 -12.73880 -12.58707 -12.45857 -12.29008 -12.15821 -11.93957 -11.86783 -11.65891 -11.59012 -11.37103 -11.14734 -10.90838 -10.86440 -10.57939 -9.85431 -9.55943 -9.33361 -9.14624 -6.48169 0.82350 0.90820 1.30438 1.50514 1.71875 1.89904 2.15215 2.34863 2.71002 3.39709 3.53094 3.60279 3.75022 3.91468 4.06231 4.08587 4.18633 4.26555 4.27968 4.35779 4.45437 4.50449 4.55248 4.60960 4.68573 4.69308 4.76373 4.80914 4.91859 4.93109 4.98095 4.99545 5.00925 5.07355 5.16471 5.21611 5.25516 5.40141 5.41994 5.48367 5.51364 5.61590 5.68247 5.83661 5.90306 6.03387 6.19597 6.48829 6.70153 6.75819 6.78129 6.89628 7.51659 8.07042 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.004381 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.405914 B = 6389.756956 C = 7400.500194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.109 3.891 4 H 0.067 0.933 5 N -0.720 5.720 6 C 0.519 3.481 7 O -0.558 6.558 8 C -0.074 4.074 9 C -0.171 4.171 10 C -0.079 4.079 11 C -0.230 4.230 12 C -0.089 4.089 13 C -0.266 4.266 14 C 0.087 3.913 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.015 3.985 18 N -0.854 5.854 19 Si 1.098 2.902 20 H -0.259 1.259 21 H -0.277 1.277 22 H -0.287 1.287 23 C 0.117 3.883 24 H 0.085 0.915 25 O -0.560 6.560 26 C -0.117 4.117 27 C -0.139 4.139 28 C -0.155 4.155 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.409 0.591 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.276 0.724 42 H 0.387 0.613 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -17.241 0.572 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C 0.004 3.996 4 H 0.085 0.915 5 N -0.373 5.373 6 C 0.307 3.693 7 O -0.436 6.436 8 C -0.114 4.114 9 C -0.172 4.172 10 C -0.097 4.097 11 C -0.249 4.249 12 C -0.107 4.107 13 C -0.285 4.285 14 C 0.084 3.916 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.198 4.198 18 N -0.480 5.480 19 Si 0.923 3.077 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.214 1.214 23 C 0.057 3.943 24 H 0.103 0.897 25 O -0.367 6.367 26 C -0.136 4.136 27 C -0.196 4.196 28 C -0.213 4.213 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.245 0.755 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.237 0.763 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.701 -15.915 2.353 17.428 hybrid contribution 0.909 -0.332 -1.393 1.696 sum 7.609 -16.248 0.961 17.967 Atomic orbital electron populations 1.21701 0.96447 1.00477 1.01140 1.21950 0.95792 0.95137 1.03733 1.21810 0.95922 0.94453 0.87381 0.91521 1.45898 1.16183 1.58193 1.17033 1.20823 0.81505 0.77107 0.89879 1.90668 1.52577 1.58851 1.41464 1.20316 0.95433 1.00093 0.95530 1.19483 0.94224 0.94697 1.08808 1.20862 0.92547 0.98229 0.98084 1.20873 0.96788 0.97605 1.09665 1.20990 0.97809 0.94933 0.96940 1.21297 0.94163 1.00981 1.12092 1.17763 0.92511 0.91300 0.89983 1.20457 0.97069 1.21686 1.17018 0.92497 1.27828 1.04469 0.89486 0.98006 1.70612 1.09614 1.26863 1.40866 0.83247 0.72679 0.77743 0.74046 1.18457 1.20270 1.21446 1.22049 0.89131 0.95343 0.87781 0.89717 1.86564 1.72031 1.25862 1.52281 1.21763 0.97461 1.00901 0.93451 1.21732 0.93662 1.01835 1.02405 1.21919 1.00426 0.99765 0.99152 0.94934 0.94509 0.92016 0.89596 0.88933 0.75489 0.86886 0.89890 0.85901 0.85428 0.85861 0.88555 0.91307 0.76299 0.88628 0.93697 0.91553 0.91539 0.90785 0.93551 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.51 71.98 0.61 -3.25 16 2 C -0.13 -2.57 4.89 30.59 0.15 -2.42 16 3 C 0.11 2.75 1.91 44.99 0.09 2.84 16 4 H 0.07 2.16 5.61 -2.39 -0.01 2.15 16 5 N -0.72 -20.83 5.01 -442.53 -2.22 -23.05 16 6 C 0.52 19.97 6.39 87.66 0.56 20.53 16 7 O -0.56 -26.35 13.17 -3.03 -0.04 -26.39 16 8 C -0.07 -2.82 5.36 29.10 0.16 -2.66 16 9 C -0.17 -7.80 4.43 -19.40 -0.09 -7.89 16 10 C -0.08 -3.24 9.66 22.22 0.21 -3.02 16 11 C -0.23 -9.23 10.05 22.46 0.23 -9.01 16 12 C -0.09 -3.84 10.02 22.22 0.22 -3.62 16 13 C -0.27 -13.38 7.26 22.73 0.16 -13.22 16 14 C 0.09 4.57 5.13 -21.29 -0.11 4.46 16 15 C -0.53 -29.94 8.80 23.46 0.21 -29.74 16 16 H 0.06 3.28 6.60 -2.91 -0.02 3.26 16 17 C 0.01 0.85 5.42 85.26 0.46 1.31 16 18 N -0.85 -49.28 13.65 21.82 0.30 -48.98 16 19 Si 1.10 54.70 24.89 68.60 1.71 56.41 16 20 H -0.26 -11.81 6.45 99.48 0.64 -11.17 16 21 H -0.28 -14.51 7.01 99.48 0.70 -13.81 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 C 0.12 2.34 2.45 30.59 0.07 2.42 16 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 25 O -0.56 -9.53 12.30 -148.98 -1.83 -11.36 16 26 C -0.12 -1.90 2.45 -10.79 -0.03 -1.93 16 27 C -0.14 -2.06 9.05 71.98 0.65 -1.41 16 28 C -0.16 -3.06 8.85 71.98 0.64 -2.42 16 29 H 0.03 1.05 7.85 -2.39 -0.02 1.04 16 30 H 0.04 1.20 5.65 -2.39 -0.01 1.19 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.34 7.00 -2.39 -0.02 1.32 16 33 H 0.09 1.43 6.34 -2.39 -0.02 1.41 16 34 H 0.41 9.92 8.38 -92.71 -0.78 9.14 16 35 H 0.11 3.34 8.06 -2.39 -0.02 3.32 16 36 H 0.08 3.29 6.51 -2.39 -0.02 3.28 16 37 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.10 4.88 4.43 -2.91 -0.01 4.86 16 41 H 0.28 15.63 8.73 -92.71 -0.81 14.82 16 42 H 0.39 4.01 7.31 -74.05 -0.54 3.47 16 43 H 0.10 1.21 6.46 -2.39 -0.02 1.20 16 44 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.93 7.68 -2.39 -0.02 0.91 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.05 1.10 6.32 -2.38 -0.02 1.08 16 Total: -1.00 -69.72 376.20 1.66 -68.06 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.46 Total: 34.34 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 4.20 Total: -49.03 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.92 Total: -72.03 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.87 Total: -37.75 kcal Atomic # 14 Polarization: 54.70 SS G_CDS: 1.71 Total: 56.41 kcal Total: -69.72 1.66 -68.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839870071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.231 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds