Wall clock time and date at job start Tue Mar 31 2020 14:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 O 1.42899 * 109.46837 * 119.99668 * 2 1 3 5 5 C 1.42906 * 113.99927 * 89.99881 * 4 2 1 6 6 C 1.52995 * 109.46929 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47104 * 60.00420 * 6 5 4 8 8 C 1.52999 * 109.47613 * 300.00015 * 6 5 4 9 9 N 1.46501 * 109.46781 * 179.97438 * 6 5 4 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 6 5 11 11 O 1.21280 * 119.99871 * 0.02562 * 10 9 6 12 12 C 1.50701 * 119.99906 * 180.02562 * 10 9 6 13 13 C 1.50700 * 109.46813 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.13180 * 265.30632 * 13 12 10 15 15 C 1.38613 * 120.24862 * 180.32332 * 14 13 12 16 16 C 1.38655 * 120.50174 * 359.67182 * 15 14 13 17 17 C 1.37598 * 120.24576 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12495 * 85.00356 * 13 12 10 19 19 C 1.41393 * 120.24620 * 359.97406 * 18 13 12 20 20 H 1.07999 * 119.99787 * 29.07372 * 19 18 13 21 21 C 1.39938 * 120.00244 * 209.07592 * 19 18 13 22 22 N 1.30823 * 120.00241 * 197.10039 * 21 19 18 23 23 Si 1.86803 * 119.99882 * 17.09514 * 21 19 18 24 24 H 1.48495 * 109.47432 * 270.00073 * 23 21 19 25 25 H 1.48498 * 109.46929 * 30.00589 * 23 21 19 26 26 H 1.48504 * 109.46998 * 150.00206 * 23 21 19 27 27 H 1.08997 * 109.47745 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47154 * 300.00337 * 1 2 3 29 29 H 1.09003 * 109.47217 * 59.99991 * 1 2 3 30 30 H 1.08996 * 109.46756 * 239.99492 * 2 1 3 31 31 H 1.09001 * 109.46925 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46855 * 299.99335 * 3 2 1 33 33 H 1.09001 * 109.47410 * 59.99819 * 3 2 1 34 34 H 1.09001 * 109.46962 * 59.99598 * 5 4 2 35 35 H 1.09002 * 109.47087 * 300.00119 * 5 4 2 36 36 H 1.09004 * 109.46850 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46884 * 299.99293 * 7 6 5 38 38 H 1.08998 * 109.47395 * 59.99874 * 7 6 5 39 39 H 1.09001 * 109.46853 * 300.00463 * 8 6 5 40 40 H 1.09000 * 109.46947 * 59.99741 * 8 6 5 41 41 H 1.08994 * 109.47717 * 180.02562 * 8 6 5 42 42 H 0.96998 * 120.00101 * 0.02562 * 9 6 5 43 43 H 1.08999 * 109.47299 * 60.00523 * 12 10 9 44 44 H 1.08998 * 109.47401 * 299.99992 * 12 10 9 45 45 H 1.08005 * 119.87130 * 0.02562 * 14 13 12 46 46 H 1.08001 * 119.74473 * 179.69460 * 15 14 13 47 47 H 1.08002 * 119.87493 * 180.02562 * 16 15 14 48 48 H 1.08003 * 120.12022 * 180.02562 * 17 16 15 49 49 H 0.97004 * 119.99819 * 355.45620 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9887 6 6 2.7089 -2.6924 2.2943 7 6 1.6820 -2.4558 3.4036 8 6 4.0373 -2.0394 2.6814 9 7 2.9069 -4.1324 2.1119 10 6 3.3545 -4.8862 3.1357 11 8 3.5929 -4.3723 4.2081 12 6 3.5587 -6.3674 2.9479 13 6 4.0599 -6.9724 4.2339 14 6 5.4107 -7.1398 4.4384 15 6 5.8740 -7.7022 5.6176 16 6 4.9852 -8.0959 6.6063 17 6 3.6310 -7.9313 6.4264 18 6 3.1490 -7.3624 5.2329 19 6 1.7595 -7.1889 5.0369 20 1 1.3474 -7.2161 4.0390 21 6 0.9183 -6.9818 6.1359 22 7 -0.3728 -7.1530 6.0128 23 14 1.6391 -6.4611 7.7787 24 1 1.9736 -7.6675 8.5773 25 1 2.8699 -5.6628 7.5485 26 1 0.6465 -5.6388 8.5164 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 2.9318 -2.2468 0.1987 35 1 1.2536 -2.5433 0.7126 36 1 2.0448 -2.8930 4.3338 37 1 1.5343 -1.3845 3.5394 38 1 0.7356 -2.9210 3.1279 39 1 4.7689 -2.2080 1.8911 40 1 3.8896 -0.9681 2.8172 41 1 4.4001 -2.4773 3.6113 42 1 2.7165 -4.5433 1.2541 43 1 4.2900 -6.5360 2.1574 44 1 2.6122 -6.8327 2.6725 45 1 6.1119 -6.8363 3.6751 46 1 6.9353 -7.8343 5.7674 47 1 5.3573 -8.5326 7.5213 48 1 2.9405 -8.2383 7.1981 49 1 -0.7542 -7.3589 5.1450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840540269.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:27 Heat of formation + Delta-G solvation = -100.973767 kcal Electronic energy + Delta-G solvation = -27729.996989 eV Core-core repulsion = 24041.387239 eV Total energy + Delta-G solvation = -3688.609750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.22820 -39.81556 -39.15150 -36.90534 -35.57898 -33.91812 -33.42714 -32.10873 -31.92092 -28.43646 -28.30490 -28.13713 -27.32174 -26.35185 -23.31659 -22.64377 -22.14283 -21.04250 -20.54783 -20.00431 -18.18430 -17.75993 -17.27718 -16.65466 -16.58965 -16.39135 -15.98825 -15.69818 -15.44897 -15.42525 -14.89737 -14.71348 -14.38736 -14.34337 -13.93276 -13.86583 -13.66116 -13.40378 -13.13081 -13.10342 -13.06046 -13.01765 -12.91829 -12.66453 -12.53793 -12.31027 -12.14466 -12.14010 -11.93163 -11.88544 -11.57407 -11.52681 -11.12495 -10.84915 -10.54161 -10.47273 -10.01473 -9.54179 -9.31910 -9.12772 -6.46069 0.83186 0.92403 1.31381 1.51612 1.72711 1.88414 2.06886 2.16319 2.71602 2.96944 3.53518 3.69998 3.83907 4.00421 4.07935 4.10894 4.15861 4.28705 4.30705 4.35288 4.40610 4.48697 4.55864 4.59038 4.71445 4.74534 4.78556 4.79692 4.85980 4.90658 4.92435 4.93200 4.96540 4.98158 5.00485 5.27271 5.29391 5.32001 5.35494 5.36542 5.53260 5.63325 5.66861 5.85406 5.91970 6.05061 6.21001 6.28843 6.50707 6.71571 6.77820 6.91047 7.51166 8.09224 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003570 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.839742 B = 7841.162171 C = 8751.271489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.074 3.926 3 C -0.147 4.147 4 O -0.391 6.391 5 C 0.074 3.926 6 C 0.178 3.822 7 C -0.152 4.152 8 C -0.147 4.147 9 N -0.720 5.720 10 C 0.523 3.477 11 O -0.556 6.556 12 C -0.072 4.072 13 C -0.172 4.172 14 C -0.079 4.079 15 C -0.232 4.232 16 C -0.089 4.089 17 C -0.267 4.267 18 C 0.086 3.914 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.016 3.984 22 N -0.854 5.854 23 Si 1.096 2.904 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.289 1.289 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.411 0.589 43 H 0.119 0.881 44 H 0.087 0.913 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.122 0.878 48 H 0.096 0.904 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 11.776 -15.594 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.017 3.983 3 C -0.204 4.204 4 O -0.310 6.310 5 C -0.003 4.003 6 C 0.092 3.908 7 C -0.210 4.210 8 C -0.205 4.205 9 N -0.376 5.376 10 C 0.311 3.689 11 O -0.433 6.433 12 C -0.112 4.112 13 C -0.173 4.173 14 C -0.097 4.097 15 C -0.251 4.251 16 C -0.107 4.107 17 C -0.286 4.286 18 C 0.083 3.917 19 C -0.560 4.560 20 H 0.078 0.922 21 C -0.197 4.197 22 N -0.479 5.479 23 Si 0.921 3.079 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.216 1.216 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.248 0.752 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.140 0.860 48 H 0.114 0.886 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.894 12.568 -13.138 18.829 hybrid contribution -0.490 -0.902 -1.900 2.160 sum 4.404 11.666 -15.038 19.536 Atomic orbital electron populations 1.22306 0.95795 1.02196 1.02938 1.22311 0.93892 0.94291 0.87794 1.21867 1.01709 0.93842 1.03022 1.87906 1.86841 1.19183 1.37048 1.22484 1.00323 0.82452 0.95066 1.20072 0.95622 0.80131 0.94927 1.22045 0.97883 1.01943 0.99134 1.22014 0.95871 1.00836 1.01811 1.45883 1.68993 1.07642 1.15099 1.20900 0.75380 0.89362 0.83298 1.90626 1.50801 1.74428 1.27406 1.20330 1.03244 0.90493 0.97095 1.19494 0.93241 1.06858 0.97755 1.20887 0.94159 0.97290 0.97373 1.20880 0.99001 1.09405 0.95783 1.20988 0.92805 0.98201 0.98728 1.21293 0.96177 1.10588 1.00499 1.17787 0.93360 0.88653 0.91882 1.20445 0.93041 1.47164 0.95330 0.92244 1.27765 0.94274 0.90984 1.06692 1.70611 1.13682 1.35886 1.27762 0.83266 0.74811 0.77670 0.72114 1.18484 1.20322 1.21637 0.93040 0.92869 0.89829 0.90701 0.92118 0.89306 0.92712 0.90557 0.92204 0.94023 0.90859 0.93751 0.91638 0.91001 0.93546 0.75249 0.86343 0.89444 0.85692 0.85470 0.85970 0.88625 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.53 71.98 0.69 -1.89 16 2 C 0.07 1.14 3.34 30.59 0.10 1.24 16 3 C -0.15 -1.92 9.56 71.98 0.69 -1.23 16 4 O -0.39 -8.39 8.64 -148.98 -1.29 -9.68 16 5 C 0.07 1.50 4.73 71.98 0.34 1.84 16 6 C 0.18 4.97 0.89 3.60 0.00 4.98 16 7 C -0.15 -5.22 8.25 71.98 0.59 -4.63 16 8 C -0.15 -4.23 8.26 71.98 0.59 -3.64 16 9 N -0.72 -20.50 5.11 -422.92 -2.16 -22.66 16 10 C 0.52 19.93 7.24 87.66 0.63 20.57 16 11 O -0.56 -26.55 12.24 -3.03 -0.04 -26.59 16 12 C -0.07 -2.64 5.36 29.10 0.16 -2.48 16 13 C -0.17 -7.75 4.43 -19.40 -0.09 -7.84 16 14 C -0.08 -3.20 9.66 22.22 0.21 -2.98 16 15 C -0.23 -9.26 10.05 22.46 0.23 -9.04 16 16 C -0.09 -3.87 10.02 22.22 0.22 -3.64 16 17 C -0.27 -13.37 7.26 22.73 0.16 -13.21 16 18 C 0.09 4.47 5.13 -21.29 -0.11 4.36 16 19 C -0.53 -29.49 8.80 23.46 0.21 -29.29 16 20 H 0.06 3.36 6.60 -2.91 -0.02 3.34 16 21 C 0.02 0.90 5.42 85.26 0.46 1.36 16 22 N -0.85 -49.08 13.65 21.82 0.30 -48.78 16 23 Si 1.10 54.99 24.89 68.60 1.71 56.69 16 24 H -0.26 -11.89 6.45 99.48 0.64 -11.25 16 25 H -0.28 -14.67 7.01 99.48 0.70 -13.98 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H 0.05 0.81 7.87 -2.39 -0.02 0.79 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 35 H 0.06 1.13 7.87 -2.39 -0.02 1.11 16 36 H 0.04 1.78 6.17 -2.38 -0.01 1.77 16 37 H 0.07 2.32 7.68 -2.39 -0.02 2.30 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.95 7.68 -2.39 -0.02 1.93 16 41 H 0.05 1.67 6.17 -2.39 -0.01 1.66 16 42 H 0.41 8.46 8.47 -92.71 -0.79 7.68 16 43 H 0.12 3.25 8.06 -2.39 -0.02 3.23 16 44 H 0.09 3.29 6.51 -2.39 -0.02 3.27 16 45 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 47 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 48 H 0.10 4.84 4.43 -2.91 -0.01 4.83 16 49 H 0.28 15.53 8.73 -92.71 -0.81 14.72 16 Total: -1.00 -70.14 386.32 3.66 -66.48 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.04 Total: 30.04 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 5.10 Total: -45.51 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.86 Total: -71.44 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.32 Total: -36.26 kcal Atomic # 14 Polarization: 54.99 SS G_CDS: 1.71 Total: 56.69 kcal Total: -70.14 3.66 -66.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840540269.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.494 kcal (2) G-P(sol) polarization free energy of solvation -70.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds