Wall clock time and date at job start Tue Mar 31 2020 14:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.53728 * 2 1 4 4 C 1.53126 * 109.51098 * 120.08893 * 2 1 3 5 5 C 1.53120 * 109.14956 * 62.27611 * 4 2 1 6 6 C 1.53040 * 109.27892 * 57.66104 * 5 4 2 7 7 N 1.46848 * 109.52227 * 300.82096 * 6 5 4 8 8 C 1.46908 * 110.99921 * 185.84007 * 7 6 5 9 9 C 1.50699 * 109.47065 * 68.80868 * 8 7 6 10 10 C 1.38298 * 119.93060 * 269.72557 * 9 8 7 11 11 C 1.38099 * 120.06941 * 179.72521 * 10 9 8 12 12 C 1.38884 * 119.92797 * 0.55152 * 11 10 9 13 13 O 1.35748 * 120.06474 * 179.74564 * 12 11 10 14 14 C 1.34833 * 116.99747 * 174.39579 * 13 12 11 15 15 H 1.08005 * 119.99910 * 5.09773 * 14 13 12 16 16 C 1.38646 * 120.00057 * 185.09713 * 14 13 12 17 17 N 1.31562 * 120.00087 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00352 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47474 * 89.99749 * 18 16 14 20 20 H 1.48499 * 109.47253 * 210.00182 * 18 16 14 21 21 H 1.48500 * 109.46703 * 329.99875 * 18 16 14 22 22 C 1.38874 * 119.86194 * 359.72200 * 12 11 10 23 23 C 1.38099 * 119.93136 * 0.02562 * 22 12 11 24 24 C 1.46849 * 111.19902 * 61.74160 * 7 6 5 25 25 H 1.08995 * 109.46000 * 58.26320 * 24 7 6 26 26 C 1.53004 * 109.45954 * 178.24211 * 24 7 6 27 27 C 1.53001 * 109.46765 * 181.17417 * 26 24 7 28 28 O 1.42902 * 109.46901 * 174.49140 * 27 26 24 29 29 H 1.08996 * 109.47274 * 180.09630 * 1 2 3 30 30 H 1.08993 * 109.47391 * 300.10379 * 1 2 3 31 31 H 1.09003 * 109.46732 * 60.10336 * 1 2 3 32 32 H 1.08997 * 109.52311 * 302.37780 * 4 2 1 33 33 H 1.08998 * 109.58394 * 182.21214 * 4 2 1 34 34 H 1.09000 * 109.50512 * 297.72227 * 5 4 2 35 35 H 1.08999 * 109.50246 * 177.59777 * 5 4 2 36 36 H 1.08996 * 109.46300 * 180.80253 * 6 5 4 37 37 H 1.09002 * 109.45465 * 60.83103 * 6 5 4 38 38 H 1.08994 * 109.46784 * 188.80971 * 8 7 6 39 39 H 1.09002 * 109.46874 * 308.80721 * 8 7 6 40 40 H 1.08007 * 119.96630 * 0.02562 * 10 9 8 41 41 H 1.08002 * 120.03360 * 180.26765 * 11 10 9 42 42 H 0.96995 * 119.99961 * 180.02562 * 17 16 14 43 43 H 1.07998 * 120.03534 * 180.02562 * 22 12 11 44 44 H 1.08005 * 119.96782 * 180.02562 * 23 22 12 45 45 H 1.08997 * 109.47123 * 61.17743 * 26 24 7 46 46 H 1.08994 * 109.47293 * 301.16992 * 26 24 7 47 47 H 1.08998 * 109.47622 * 54.48735 * 27 26 24 48 48 H 1.09004 * 109.47138 * 294.48756 * 27 26 24 49 49 H 0.96702 * 113.99534 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0414 -0.7236 1.2488 5 6 1.5749 -2.1815 1.2110 6 6 2.0843 -2.8419 -0.0721 7 7 1.5673 -2.1134 -1.2376 8 6 1.9219 -2.7998 -2.4872 9 6 1.1595 -4.0962 -2.5820 10 6 1.7057 -5.2573 -2.0661 11 6 1.0070 -6.4458 -2.1463 12 6 -0.2404 -6.4765 -2.7562 13 8 -0.9273 -7.6442 -2.8412 14 6 -2.1786 -7.5834 -3.3397 15 1 -2.5613 -6.6502 -3.7258 16 6 -2.9741 -8.7188 -3.3564 17 7 -4.1949 -8.6596 -3.8432 18 14 -2.3126 -10.3328 -2.6879 19 1 -2.6280 -10.4355 -1.2404 20 1 -2.9431 -11.4647 -3.4134 21 1 -0.8407 -10.3812 -2.8785 22 6 -0.7836 -5.3099 -3.2784 23 6 -0.0823 -4.1235 -3.1903 24 6 2.0410 -0.7235 -1.2480 25 1 3.1308 -0.7113 -1.2542 26 6 1.5160 -0.0154 -2.4986 27 6 2.0334 1.4243 -2.5245 28 8 1.6505 2.0460 -3.7529 29 1 -0.3633 -1.0276 0.0017 30 1 -0.3634 0.5154 0.8890 31 1 -0.3633 0.5122 -0.8909 32 1 1.6445 -0.2372 2.1399 33 1 3.1306 -0.6901 1.2701 34 1 0.4856 -2.2157 1.2301 35 1 1.9715 -2.7131 2.0760 36 1 1.7419 -3.8761 -0.1090 37 1 3.1741 -2.8196 -0.0839 38 1 1.6662 -2.1650 -3.3355 39 1 2.9922 -3.0061 -2.4973 40 1 2.6776 -5.2336 -1.5955 41 1 1.4322 -7.3513 -1.7394 42 1 -4.7515 -9.4538 -3.8546 43 1 -1.7536 -5.3305 -3.7528 44 1 -0.5044 -3.2159 -3.5958 45 1 0.4262 -0.0095 -2.4823 46 1 1.8633 -0.5422 -3.3872 47 1 3.1203 1.4214 -2.4420 48 1 1.6071 1.9787 -1.6884 49 1 1.9454 2.9630 -3.8382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852455171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:51 Heat of formation + Delta-G solvation = -56.063056 kcal Electronic energy + Delta-G solvation = -27446.779302 eV Core-core repulsion = 23760.117026 eV Total energy + Delta-G solvation = -3686.662275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 7.32 seconds Orbital eigenvalues (eV) -40.19213 -39.03633 -37.16934 -36.75212 -34.24099 -33.37461 -32.35247 -30.31528 -29.98782 -29.05362 -26.70749 -26.07614 -24.67682 -23.95023 -22.51032 -21.85344 -20.99216 -20.18459 -18.61908 -17.83958 -17.70869 -17.22695 -16.01687 -15.94010 -15.61640 -14.97554 -14.56202 -14.47014 -14.16820 -14.05370 -13.79549 -13.73853 -13.48149 -13.46267 -13.29732 -12.73467 -12.52500 -12.39000 -12.18929 -12.09073 -11.98463 -11.60646 -11.49179 -11.34172 -11.19317 -10.98385 -10.77812 -10.72793 -10.66911 -10.57313 -10.30873 -10.19061 -10.10580 -9.98180 -9.35161 -8.84289 -8.23907 -8.16629 -7.27283 -6.39318 -4.05801 2.16150 2.22306 3.23134 3.26827 3.41441 3.70305 4.14093 4.25401 4.53448 4.59960 4.65845 4.76593 4.85249 4.88844 5.03361 5.06085 5.13227 5.14378 5.16311 5.32854 5.37008 5.37524 5.45093 5.49019 5.58123 5.66499 5.70030 5.75427 5.79979 5.82458 5.85328 5.91076 6.00876 6.04473 6.13854 6.16658 6.18391 6.26053 6.38496 6.50502 6.60574 6.83001 7.03144 7.13611 7.22062 7.31791 7.36030 7.38734 7.65039 7.83471 8.06689 8.96134 9.58996 10.68469 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.002869 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.551872 B = 9758.698191 C =10299.255274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.055 3.945 7 N -0.521 5.521 8 C 0.104 3.896 9 C -0.166 4.166 10 C -0.072 4.072 11 C -0.193 4.193 12 C 0.161 3.839 13 O -0.219 6.219 14 C -0.388 4.388 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.221 4.221 23 C -0.051 4.051 24 C 0.095 3.905 25 H 0.036 0.964 26 C -0.122 4.122 27 C 0.077 3.923 28 O -0.574 6.574 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.026 0.974 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.279 0.721 43 H 0.132 0.868 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.048 0.952 49 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.472 19.267 7.513 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.073 4.073 7 N -0.246 5.246 8 C -0.023 4.023 9 C -0.167 4.167 10 C -0.091 4.091 11 C -0.213 4.213 12 C 0.108 3.892 13 O -0.124 6.124 14 C -0.464 4.464 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.240 4.240 23 C -0.070 4.070 24 C -0.014 4.014 25 H 0.054 0.946 26 C -0.160 4.160 27 C -0.001 4.001 28 O -0.379 6.379 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.044 0.956 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.127 0.873 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.546 18.319 7.454 23.972 hybrid contribution 1.193 -0.145 0.291 1.236 sum 14.739 18.174 7.745 24.648 Atomic orbital electron populations 1.21834 0.94203 1.03428 1.00603 1.21209 0.97241 0.98000 0.93843 0.91443 1.21624 0.99950 0.96228 0.97547 1.21629 1.02286 0.95047 0.96705 1.22139 0.96266 0.99069 0.89809 1.61898 1.59928 1.00440 1.02333 1.20960 0.96080 0.93241 0.91981 1.19117 0.97141 0.93509 1.06926 1.20472 0.98198 0.91837 0.98576 1.20153 0.95189 0.98391 1.07527 1.19121 0.91422 0.85769 0.92840 1.83569 1.27842 1.27291 1.73700 1.20771 0.86076 0.99907 1.39641 0.87620 1.24461 0.94372 0.98926 0.96253 1.69649 1.07253 1.30857 1.44093 0.86186 0.80212 0.81390 0.79137 1.19915 1.20823 1.18399 1.21275 1.02685 0.92579 1.07482 1.20608 0.93203 0.96608 0.96551 1.21476 0.96261 0.89252 0.94387 0.94601 1.21720 1.03089 0.93278 0.97890 1.22209 0.97733 0.94235 0.85904 1.86504 1.81154 1.30793 1.39443 0.90607 0.93716 0.92766 0.91979 0.92626 0.90607 0.91903 0.89539 0.95625 0.90029 0.95076 0.87444 0.86746 0.91090 0.85054 0.87290 0.89695 0.90680 0.94089 0.93414 0.77610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.38 37.16 0.31 -1.11 16 2 C -0.08 -0.75 2.39 -90.54 -0.22 -0.97 16 3 H 0.07 0.52 6.63 -51.93 -0.34 0.18 16 4 C -0.12 -1.01 5.51 -26.60 -0.15 -1.16 16 5 C -0.12 -1.21 5.74 -26.65 -0.15 -1.37 16 6 C 0.05 0.64 5.21 -3.83 -0.02 0.62 16 7 N -0.52 -6.30 3.74 -228.12 -0.85 -7.15 16 8 C 0.10 1.37 4.89 -4.97 -0.02 1.34 16 9 C -0.17 -2.70 4.97 -104.58 -0.52 -3.22 16 10 C -0.07 -1.20 7.98 -39.61 -0.32 -1.52 16 11 C -0.19 -3.81 9.99 -39.39 -0.39 -4.21 16 12 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 13 O -0.22 -5.82 8.59 0.05 0.00 -5.82 16 14 C -0.39 -11.03 9.95 30.88 0.31 -10.72 16 15 H 0.11 3.07 5.44 -52.48 -0.29 2.79 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16 18 Si 0.91 21.83 28.62 -169.99 -4.86 16.97 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.26 -6.29 7.11 56.52 0.40 -5.88 16 22 C -0.22 -4.80 9.17 -39.40 -0.36 -5.16 16 23 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 24 C 0.09 0.95 1.65 -67.72 -0.11 0.84 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 C -0.12 -1.25 4.42 -26.73 -0.12 -1.36 16 27 C 0.08 0.65 6.56 37.16 0.24 0.89 16 28 O -0.57 -5.33 13.66 -35.23 -0.48 -5.81 16 29 H 0.08 0.90 6.01 -51.93 -0.31 0.59 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.54 6.39 -51.93 -0.33 0.21 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.86 6.58 -51.93 -0.34 0.52 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.16 5.83 -51.93 -0.30 0.86 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 1.04 5.43 -51.93 -0.28 0.76 16 39 H 0.03 0.39 8.03 -51.93 -0.42 -0.03 16 40 H 0.11 1.51 7.92 -52.48 -0.42 1.09 16 41 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 42 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.13 3.02 5.64 -52.49 -0.30 2.73 16 44 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 45 H 0.08 0.98 6.35 -51.93 -0.33 0.65 16 46 H 0.07 0.84 5.99 -51.93 -0.31 0.53 16 47 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.05 0.35 6.78 -51.93 -0.35 0.00 16 49 H 0.38 1.69 9.12 45.56 0.42 2.10 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -30.44 372.08 -8.92 -39.36 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.85 Total: 4.99 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.26 Total: -23.28 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: -0.08 Total: -32.02 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.48 Total: -11.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.44 -8.92 -39.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852455171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.704 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.32 seconds