Wall clock time and date at job start Tue Mar 31 2020 14:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.53728 * 2 1 4 4 C 1.53126 * 109.51098 * 120.08893 * 2 1 3 5 5 C 1.53120 * 109.14956 * 62.27611 * 4 2 1 6 6 C 1.53040 * 109.27892 * 57.66104 * 5 4 2 7 7 N 1.46848 * 109.52227 * 300.82096 * 6 5 4 8 8 C 1.46908 * 110.99921 * 185.84007 * 7 6 5 9 9 C 1.50699 * 109.47065 * 68.80868 * 8 7 6 10 10 C 1.38298 * 119.93060 * 269.72557 * 9 8 7 11 11 C 1.38099 * 120.06941 * 179.72521 * 10 9 8 12 12 C 1.38884 * 119.92797 * 0.55152 * 11 10 9 13 13 O 1.35748 * 120.06474 * 179.74564 * 12 11 10 14 14 C 1.34833 * 116.99747 * 174.39579 * 13 12 11 15 15 H 1.08005 * 119.99910 * 5.09773 * 14 13 12 16 16 C 1.38646 * 120.00057 * 185.09713 * 14 13 12 17 17 N 1.31562 * 120.00087 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00352 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47474 * 89.99749 * 18 16 14 20 20 H 1.48499 * 109.47253 * 210.00182 * 18 16 14 21 21 H 1.48500 * 109.46703 * 329.99875 * 18 16 14 22 22 C 1.38874 * 119.86194 * 359.72200 * 12 11 10 23 23 C 1.38099 * 119.93136 * 0.02562 * 22 12 11 24 24 C 1.46849 * 111.19902 * 61.74160 * 7 6 5 25 25 H 1.08995 * 109.46000 * 58.26320 * 24 7 6 26 26 C 1.53004 * 109.45954 * 178.24211 * 24 7 6 27 27 C 1.53001 * 109.46765 * 181.17417 * 26 24 7 28 28 O 1.42902 * 109.46901 * 174.49140 * 27 26 24 29 29 H 1.08996 * 109.47274 * 180.09630 * 1 2 3 30 30 H 1.08993 * 109.47391 * 300.10379 * 1 2 3 31 31 H 1.09003 * 109.46732 * 60.10336 * 1 2 3 32 32 H 1.08997 * 109.52311 * 302.37780 * 4 2 1 33 33 H 1.08998 * 109.58394 * 182.21214 * 4 2 1 34 34 H 1.09000 * 109.50512 * 297.72227 * 5 4 2 35 35 H 1.08999 * 109.50246 * 177.59777 * 5 4 2 36 36 H 1.08996 * 109.46300 * 180.80253 * 6 5 4 37 37 H 1.09002 * 109.45465 * 60.83103 * 6 5 4 38 38 H 1.08994 * 109.46784 * 188.80971 * 8 7 6 39 39 H 1.09002 * 109.46874 * 308.80721 * 8 7 6 40 40 H 1.08007 * 119.96630 * 0.02562 * 10 9 8 41 41 H 1.08002 * 120.03360 * 180.26765 * 11 10 9 42 42 H 0.96995 * 119.99961 * 180.02562 * 17 16 14 43 43 H 1.07998 * 120.03534 * 180.02562 * 22 12 11 44 44 H 1.08005 * 119.96782 * 180.02562 * 23 22 12 45 45 H 1.08997 * 109.47123 * 61.17743 * 26 24 7 46 46 H 1.08994 * 109.47293 * 301.16992 * 26 24 7 47 47 H 1.08998 * 109.47622 * 54.48735 * 27 26 24 48 48 H 1.09004 * 109.47138 * 294.48756 * 27 26 24 49 49 H 0.96702 * 113.99534 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0414 -0.7236 1.2488 5 6 1.5749 -2.1815 1.2110 6 6 2.0843 -2.8419 -0.0721 7 7 1.5673 -2.1134 -1.2376 8 6 1.9219 -2.7998 -2.4872 9 6 1.1595 -4.0962 -2.5820 10 6 1.7057 -5.2573 -2.0661 11 6 1.0070 -6.4458 -2.1463 12 6 -0.2404 -6.4765 -2.7562 13 8 -0.9273 -7.6442 -2.8412 14 6 -2.1786 -7.5834 -3.3397 15 1 -2.5613 -6.6502 -3.7258 16 6 -2.9741 -8.7188 -3.3564 17 7 -4.1949 -8.6596 -3.8432 18 14 -2.3126 -10.3328 -2.6879 19 1 -2.6280 -10.4355 -1.2404 20 1 -2.9431 -11.4647 -3.4134 21 1 -0.8407 -10.3812 -2.8785 22 6 -0.7836 -5.3099 -3.2784 23 6 -0.0823 -4.1235 -3.1903 24 6 2.0410 -0.7235 -1.2480 25 1 3.1308 -0.7113 -1.2542 26 6 1.5160 -0.0154 -2.4986 27 6 2.0334 1.4243 -2.5245 28 8 1.6505 2.0460 -3.7529 29 1 -0.3633 -1.0276 0.0017 30 1 -0.3634 0.5154 0.8890 31 1 -0.3633 0.5122 -0.8909 32 1 1.6445 -0.2372 2.1399 33 1 3.1306 -0.6901 1.2701 34 1 0.4856 -2.2157 1.2301 35 1 1.9715 -2.7131 2.0760 36 1 1.7419 -3.8761 -0.1090 37 1 3.1741 -2.8196 -0.0839 38 1 1.6662 -2.1650 -3.3355 39 1 2.9922 -3.0061 -2.4973 40 1 2.6776 -5.2336 -1.5955 41 1 1.4322 -7.3513 -1.7394 42 1 -4.7515 -9.4538 -3.8546 43 1 -1.7536 -5.3305 -3.7528 44 1 -0.5044 -3.2159 -3.5958 45 1 0.4262 -0.0095 -2.4823 46 1 1.8633 -0.5422 -3.3872 47 1 3.1203 1.4214 -2.4420 48 1 1.6071 1.9787 -1.6884 49 1 1.9454 2.9630 -3.8382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852455171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:50 Heat of formation + Delta-G solvation = -75.952208 kcal Electronic energy + Delta-G solvation = -27447.641760 eV Core-core repulsion = 23760.117026 eV Total energy + Delta-G solvation = -3687.524733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.22334 -40.58342 -38.49801 -37.69733 -35.30487 -34.40732 -34.15302 -31.85931 -31.33449 -29.95785 -27.76353 -27.44421 -26.21052 -24.70268 -23.81491 -23.24157 -21.89675 -21.51814 -19.82135 -19.35924 -19.08251 -18.37705 -16.93786 -16.72743 -16.66418 -16.62536 -15.82182 -15.70826 -15.67200 -15.42723 -15.11681 -14.77664 -14.65365 -14.40647 -14.27247 -14.24652 -14.07500 -14.00623 -13.33295 -13.04767 -12.97195 -12.83861 -12.61784 -12.52066 -12.37755 -12.29375 -12.15774 -12.00125 -11.85035 -11.64710 -11.39515 -11.26208 -11.08704 -10.98010 -10.87244 -10.68827 -9.77345 -9.16480 -8.91991 -8.49862 -6.22503 0.58211 0.64343 1.30803 1.35271 1.51721 2.28055 2.67955 2.92137 3.10993 3.20805 3.51724 3.78723 3.90362 3.95402 4.03698 4.08841 4.16095 4.19886 4.34356 4.37354 4.39630 4.46755 4.50568 4.58512 4.62220 4.67781 4.71677 4.74745 4.79403 4.86072 4.95754 4.98073 5.00041 5.11634 5.12409 5.19601 5.24615 5.26409 5.36183 5.39049 5.39692 5.49019 5.58105 5.69594 5.76909 5.83857 5.91837 6.20074 6.27379 6.34274 6.84486 6.94714 7.59218 8.62048 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.002869 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.551872 B = 9758.698191 C =10299.255274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.089 0.911 4 C -0.112 4.112 5 C -0.118 4.118 6 C 0.054 3.946 7 N -0.535 5.535 8 C 0.107 3.893 9 C -0.138 4.138 10 C -0.061 4.061 11 C -0.190 4.190 12 C 0.120 3.880 13 O -0.246 6.246 14 C -0.399 4.399 15 H 0.078 0.922 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.237 4.237 23 C -0.055 4.055 24 C 0.100 3.900 25 H 0.048 0.952 26 C -0.121 4.121 27 C 0.080 3.920 28 O -0.599 6.599 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.148 0.852 41 H 0.128 0.872 42 H 0.285 0.715 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.072 21.161 9.239 29.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.107 0.893 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.074 4.074 7 N -0.260 5.260 8 C -0.020 4.020 9 C -0.140 4.140 10 C -0.079 4.079 11 C -0.209 4.209 12 C 0.071 3.929 13 O -0.153 6.153 14 C -0.475 4.475 15 H 0.096 0.904 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.794 3.206 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.256 4.256 23 C -0.074 4.074 24 C -0.008 4.008 25 H 0.066 0.934 26 C -0.159 4.159 27 C 0.002 3.998 28 O -0.407 6.407 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.166 0.834 41 H 0.146 0.854 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 17.180 20.271 9.186 28.115 hybrid contribution 0.253 -0.383 -0.215 0.507 sum 17.432 19.888 8.971 27.927 Atomic orbital electron populations 1.21776 0.95287 1.01825 1.00832 1.21233 0.96213 0.99074 0.93456 0.89316 1.21606 1.00679 0.94905 0.97720 1.21610 1.01164 0.96408 0.96414 1.22140 0.97045 0.98017 0.90152 1.61806 1.60789 1.01575 1.01828 1.20932 0.96436 0.91511 0.93118 1.19589 0.95804 0.95309 1.03253 1.20898 0.99285 0.90454 0.97271 1.20478 0.93799 1.00254 1.06413 1.19650 0.92838 0.85452 0.94955 1.83509 1.27124 1.28941 1.75752 1.20695 0.87418 0.99319 1.40088 0.90420 1.25297 0.94589 1.02356 0.96679 1.69737 1.08562 1.32137 1.46159 0.85196 0.79226 0.77300 0.78844 1.19050 1.19165 1.18654 1.21246 1.02233 0.93948 1.08199 1.20813 0.93977 0.95814 0.96800 1.21497 0.96805 0.87744 0.94801 0.93397 1.21681 1.01898 0.94792 0.97508 1.22195 0.98603 0.92984 0.86016 1.86450 1.81677 1.32602 1.39992 0.93093 0.92806 0.93249 0.91017 0.91354 0.92465 0.90887 0.91559 0.94157 0.89497 0.93142 0.83397 0.85402 0.90584 0.87827 0.85696 0.91628 0.91809 0.92496 0.92160 0.75320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.38 71.98 0.60 -1.93 16 2 C -0.08 -1.18 2.39 -10.74 -0.03 -1.21 16 3 H 0.09 0.98 6.63 -2.39 -0.02 0.96 16 4 C -0.11 -1.54 5.51 30.68 0.17 -1.37 16 5 C -0.12 -2.11 5.74 30.65 0.18 -1.93 16 6 C 0.05 1.09 5.21 86.33 0.45 1.54 16 7 N -0.54 -11.49 3.74 -875.63 -3.28 -14.76 16 8 C 0.11 2.48 4.89 85.56 0.42 2.90 16 9 C -0.14 -4.24 4.97 -19.84 -0.10 -4.34 16 10 C -0.06 -1.86 7.98 22.25 0.18 -1.69 16 11 C -0.19 -7.34 9.99 22.39 0.22 -7.12 16 12 C 0.12 5.75 6.65 22.58 0.15 5.90 16 13 O -0.25 -13.66 8.59 -22.75 -0.20 -13.86 16 14 C -0.40 -24.14 9.95 67.92 0.68 -23.46 16 15 H 0.08 4.96 5.44 -2.91 -0.02 4.95 16 16 C 0.01 0.52 5.49 84.83 0.47 0.99 16 17 N -0.92 -56.43 13.96 21.61 0.30 -56.12 16 18 Si 0.97 46.26 28.62 68.60 1.96 48.22 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 22 C -0.24 -10.86 9.17 22.39 0.21 -10.65 16 23 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 24 C 0.10 1.67 1.65 44.94 0.07 1.75 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 C -0.12 -2.18 4.42 30.60 0.14 -2.05 16 27 C 0.08 1.09 6.56 71.98 0.47 1.56 16 28 O -0.60 -9.77 13.66 -148.98 -2.04 -11.80 16 29 H 0.05 1.18 6.01 -2.39 -0.01 1.17 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.93 6.39 -2.39 -0.02 0.91 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.24 6.58 -2.39 -0.02 1.22 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.60 5.83 -2.39 -0.01 1.58 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 1.99 5.43 -2.39 -0.01 1.98 16 39 H 0.05 1.03 8.03 -2.39 -0.02 1.01 16 40 H 0.15 3.43 7.92 -2.91 -0.02 3.41 16 41 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 43 H 0.10 5.27 5.64 -2.91 -0.02 5.25 16 44 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 45 H 0.07 1.44 6.35 -2.39 -0.02 1.42 16 46 H 0.06 1.28 5.99 -2.39 -0.01 1.27 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.06 0.67 6.78 -2.38 -0.02 0.65 16 49 H 0.40 2.58 9.12 -74.06 -0.68 1.91 16 Total: -1.00 -70.03 372.08 1.53 -68.51 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.28 Total: 22.74 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 4.49 Total: -42.92 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -2.98 Total: -70.89 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -2.23 Total: -25.66 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.96 Total: 48.22 kcal Total: -70.03 1.53 -68.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852455171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.447 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds