Wall clock time and date at job start Tue Mar 31 2020 12:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46850 * 2 1 4 4 N 1.46904 * 109.46947 * 119.99892 * 2 1 3 5 5 C 1.46847 * 111.00155 * 295.71893 * 4 2 1 6 6 C 1.53034 * 109.52453 * 174.16377 * 5 4 2 7 7 C 1.53114 * 109.27907 * 59.17787 * 6 5 4 8 8 C 1.53118 * 109.16153 * 302.34626 * 7 6 5 9 9 C 1.46847 * 110.99926 * 171.50922 * 4 2 1 10 10 H 1.09003 * 109.45378 * 65.82463 * 9 4 2 11 11 C 1.52998 * 109.46027 * 305.85300 * 9 4 2 12 12 O 1.42893 * 109.47549 * 296.67580 * 11 9 4 13 13 C 1.35894 * 117.00381 * 180.02562 * 12 11 9 14 14 C 1.38824 * 120.01994 * 359.97438 * 13 12 11 15 15 C 1.38196 * 120.08145 * 180.02562 * 14 13 12 16 16 C 1.38148 * 120.12236 * 0.02562 * 15 14 13 17 17 C 1.38891 * 120.04297 * 359.95156 * 16 15 14 18 18 O 1.35757 * 120.04238 * 180.02562 * 17 16 15 19 19 C 1.34826 * 117.00002 * 185.99085 * 18 17 16 20 20 H 1.07994 * 120.00344 * 5.47335 * 19 18 17 21 21 C 1.38653 * 120.00056 * 185.48305 * 19 18 17 22 22 N 1.31556 * 120.00171 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99761 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47224 * 90.00485 * 23 21 19 25 25 H 1.48506 * 109.47542 * 210.00298 * 23 21 19 26 26 H 1.48501 * 109.47578 * 330.00348 * 23 21 19 27 27 C 1.38574 * 120.02088 * 179.72318 * 13 12 11 28 28 H 1.09005 * 109.47267 * 299.99763 * 1 2 3 29 29 H 1.08998 * 109.46973 * 60.00361 * 1 2 3 30 30 H 1.09004 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46889 * 239.99629 * 2 1 3 32 32 H 1.08998 * 109.47038 * 299.99600 * 3 2 1 33 33 H 1.08991 * 109.47168 * 60.00179 * 3 2 1 34 34 H 1.09004 * 109.46940 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46125 * 54.14204 * 5 4 2 36 36 H 1.09002 * 109.45466 * 294.17548 * 5 4 2 37 37 H 1.08999 * 109.50004 * 299.23328 * 6 5 4 38 38 H 1.09004 * 109.50167 * 179.12080 * 6 5 4 39 39 H 1.08999 * 109.52403 * 182.43916 * 7 6 5 40 40 H 1.09004 * 109.57730 * 62.28196 * 7 6 5 41 41 H 1.09005 * 109.50087 * 297.71396 * 8 7 6 42 42 H 1.08999 * 109.50528 * 177.59987 * 8 7 6 43 43 H 1.09003 * 109.47156 * 176.67015 * 11 9 4 44 44 H 1.09004 * 109.46810 * 56.67698 * 11 9 4 45 45 H 1.07993 * 119.96063 * 359.97345 * 14 13 12 46 46 H 1.07999 * 119.93441 * 179.97438 * 15 14 13 47 47 H 1.08001 * 119.98125 * 179.97438 * 16 15 14 48 48 H 0.97006 * 120.00156 * 179.97438 * 22 21 19 49 49 H 1.07991 * 120.06257 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6342 0.0299 2.4185 6 6 2.0322 -0.7911 3.6471 7 6 3.5448 -1.0279 3.6285 8 6 3.9264 -1.7384 2.3269 9 6 3.4735 -0.8899 1.1366 10 1 3.9731 0.0783 1.1697 11 6 3.8347 -1.6057 -0.1665 12 8 3.2421 -2.9059 -0.1760 13 6 3.4675 -3.6787 -1.2708 14 6 4.2433 -3.1943 -2.3151 15 6 4.4729 -3.9790 -3.4293 16 6 3.9308 -5.2473 -3.5078 17 6 3.1542 -5.7372 -2.4657 18 8 2.6220 -6.9837 -2.5426 19 6 1.7784 -7.3509 -1.5570 20 1 1.4847 -6.6356 -0.8031 21 6 1.2882 -8.6471 -1.5111 22 7 0.4656 -9.0056 -0.5491 23 14 1.7959 -9.8843 -2.8153 24 1 3.0209 -10.5968 -2.3716 25 1 0.6999 -10.8651 -3.0207 26 1 2.0705 -9.1748 -4.0906 27 6 2.9273 -4.9528 -1.3432 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 0.5557 0.1882 2.4211 36 1 2.1427 0.9937 2.4454 37 1 1.5135 -1.7496 3.6278 38 1 1.7600 -0.2475 4.5518 39 1 3.8268 -1.6490 4.4787 40 1 4.0650 -0.0718 3.6875 41 1 3.4375 -2.7119 2.2869 42 1 5.0075 -1.8717 2.2884 43 1 4.9182 -1.6996 -0.2411 44 1 3.4609 -1.0297 -1.0131 45 1 4.6674 -2.2028 -2.2572 46 1 5.0765 -3.5996 -4.2406 47 1 4.1114 -5.8584 -4.3798 48 1 0.1223 -9.9123 -0.5172 49 1 2.3265 -5.3326 -0.5302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853720514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:19 Heat of formation + Delta-G solvation = -39.362502 kcal Electronic energy + Delta-G solvation = -27728.554397 eV Core-core repulsion = 24042.616313 eV Total energy + Delta-G solvation = -3685.938085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.27676 -39.29381 -37.97856 -35.70529 -35.20980 -32.37018 -32.17513 -30.30674 -29.58071 -28.76166 -27.35813 -26.57364 -25.20138 -24.39760 -22.24610 -21.85253 -20.79086 -20.62453 -19.04944 -17.97708 -17.84970 -16.61949 -15.86957 -15.76686 -15.25000 -15.14406 -14.68509 -14.46505 -14.41883 -14.16631 -13.86241 -13.72079 -13.60624 -13.33278 -13.17942 -12.96640 -12.69852 -12.22361 -12.18666 -12.05673 -11.85493 -11.79342 -11.65657 -11.45177 -11.18635 -11.05614 -10.98001 -10.86192 -10.73994 -10.56285 -10.34815 -10.27023 -10.21322 -9.97287 -9.42142 -8.83545 -8.26099 -7.70149 -7.33750 -6.37726 -4.04864 2.18626 2.28687 3.24447 3.28262 3.42919 3.55718 3.77215 4.26797 4.51649 4.59708 4.63666 4.72760 4.83691 4.89700 4.98890 5.05449 5.12671 5.15011 5.18497 5.19647 5.29407 5.41853 5.42403 5.48954 5.53281 5.58236 5.63544 5.67878 5.73983 5.77565 5.78960 5.86819 5.90822 6.03805 6.06913 6.12907 6.16225 6.24962 6.28017 6.33620 6.43969 6.64246 7.01759 7.08909 7.10218 7.14716 7.18787 7.48338 7.84572 8.00456 8.13476 8.97095 9.58197 10.69744 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.003309 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.385654 B = 8458.800969 C = 9117.008646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 C -0.187 4.187 4 N -0.515 5.515 5 C 0.053 3.947 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.113 4.113 9 C 0.090 3.910 10 H 0.055 0.945 11 C 0.066 3.934 12 O -0.295 6.295 13 C 0.168 3.832 14 C -0.293 4.293 15 C -0.045 4.045 16 C -0.224 4.224 17 C 0.190 3.810 18 O -0.212 6.212 19 C -0.389 4.389 20 H 0.109 0.891 21 C 0.064 3.936 22 N -0.877 5.877 23 Si 0.904 3.096 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.251 4.251 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.279 0.721 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 20.413 3.991 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 C -0.246 4.246 4 N -0.240 5.240 5 C -0.075 4.075 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.150 4.150 9 C -0.018 4.018 10 H 0.072 0.928 11 C -0.010 4.010 12 O -0.208 6.208 13 C 0.123 3.877 14 C -0.313 4.313 15 C -0.064 4.064 16 C -0.243 4.243 17 C 0.137 3.863 18 O -0.117 6.117 19 C -0.465 4.465 20 H 0.126 0.874 21 C -0.139 4.139 22 N -0.515 5.515 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.271 4.271 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.135 0.865 48 H 0.089 0.911 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.929 19.525 4.127 20.556 hybrid contribution 0.644 0.451 -0.541 0.955 sum 5.574 19.977 3.586 21.048 Atomic orbital electron populations 1.21830 0.94106 1.02937 1.01146 1.21819 0.96184 0.91837 0.94060 1.22504 1.01164 0.98574 1.02356 1.62075 1.11705 1.48702 1.01523 1.22145 1.00767 0.94738 0.89848 1.21602 0.96242 1.01238 0.96561 1.21570 0.96115 1.00074 0.97950 1.21584 1.00449 1.00461 0.92553 1.21691 0.88634 0.96837 0.94623 0.92754 1.22809 0.97121 0.83688 0.97422 1.86161 1.70533 1.25648 1.38425 1.18711 0.93320 0.90244 0.85467 1.20687 1.11048 1.01821 0.97701 1.20380 0.96866 0.92843 0.96287 1.20120 1.06866 0.97550 0.99798 1.18775 0.90494 0.84997 0.92054 1.83606 1.54816 1.26173 1.47056 1.20819 1.21172 0.98348 1.06119 0.87400 1.24468 0.95543 0.96698 0.97197 1.69656 1.30615 1.20075 1.31127 0.86204 0.78290 0.80224 0.82324 1.19900 1.20767 1.18307 1.20425 1.11101 0.93662 1.01901 0.92842 0.92468 0.91328 0.89369 0.92070 0.92330 0.92862 0.90458 0.95037 0.90692 0.91912 0.91739 0.92752 0.89529 0.91731 0.92145 0.92139 0.87234 0.86785 0.86519 0.91066 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.09 37.16 0.34 -1.17 16 2 C 0.07 0.76 2.62 -67.71 -0.18 0.58 16 3 C -0.19 -1.64 8.47 37.16 0.31 -1.33 16 4 N -0.52 -6.12 4.37 -218.76 -0.96 -7.08 16 5 C 0.05 0.53 4.58 -3.84 -0.02 0.51 16 6 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 7 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 8 C -0.11 -1.31 5.21 -26.65 -0.14 -1.45 16 9 C 0.09 1.04 1.87 -67.73 -0.13 0.91 16 10 H 0.05 0.55 6.82 -51.93 -0.35 0.19 16 11 C 0.07 0.86 3.95 37.16 0.15 1.01 16 12 O -0.29 -5.19 9.23 -19.41 -0.18 -5.37 16 13 C 0.17 3.29 6.68 -39.24 -0.26 3.03 16 14 C -0.29 -5.06 9.04 -39.38 -0.36 -5.41 16 15 C -0.05 -0.78 10.03 -39.63 -0.40 -1.18 16 16 C -0.22 -4.53 9.99 -39.37 -0.39 -4.92 16 17 C 0.19 4.51 6.64 -39.13 -0.26 4.25 16 18 O -0.21 -5.69 8.58 0.04 0.00 -5.69 16 19 C -0.39 -11.18 9.90 30.89 0.31 -10.88 16 20 H 0.11 3.22 5.54 -52.49 -0.29 2.93 16 21 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 22 N -0.88 -25.66 13.96 55.48 0.77 -24.89 16 23 Si 0.90 21.83 28.62 -169.99 -4.86 16.97 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.25 -5.77 9.07 -39.25 -0.36 -6.12 16 28 H 0.05 0.51 6.38 -51.93 -0.33 0.17 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.10 5.66 -51.93 -0.29 0.81 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 34 H 0.05 0.46 6.76 -51.93 -0.35 0.11 16 35 H 0.08 0.75 6.15 -51.93 -0.32 0.43 16 36 H 0.03 0.29 6.58 -51.93 -0.34 -0.05 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 44 H 0.06 0.75 5.47 -51.93 -0.28 0.47 16 45 H 0.11 1.57 6.29 -52.49 -0.33 1.24 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 48 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.14 3.48 5.72 -52.49 -0.30 3.18 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -29.97 373.47 -9.08 -39.05 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.69 Total: 4.48 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -1.80 Total: -23.10 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: -0.18 Total: -31.96 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.18 Total: -11.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.97 -9.08 -39.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853720514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.311 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds