Wall clock time and date at job start Tue Mar 31 2020 12:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46850 * 2 1 4 4 N 1.46904 * 109.46947 * 119.99892 * 2 1 3 5 5 C 1.46847 * 111.00155 * 295.71893 * 4 2 1 6 6 C 1.53034 * 109.52453 * 174.16377 * 5 4 2 7 7 C 1.53114 * 109.27907 * 59.17787 * 6 5 4 8 8 C 1.53118 * 109.16153 * 302.34626 * 7 6 5 9 9 C 1.46847 * 110.99926 * 171.50922 * 4 2 1 10 10 H 1.09003 * 109.45378 * 65.82463 * 9 4 2 11 11 C 1.52998 * 109.46027 * 305.85300 * 9 4 2 12 12 O 1.42893 * 109.47549 * 296.67580 * 11 9 4 13 13 C 1.35894 * 117.00381 * 180.02562 * 12 11 9 14 14 C 1.38824 * 120.01994 * 359.97438 * 13 12 11 15 15 C 1.38196 * 120.08145 * 180.02562 * 14 13 12 16 16 C 1.38148 * 120.12236 * 0.02562 * 15 14 13 17 17 C 1.38891 * 120.04297 * 359.95156 * 16 15 14 18 18 O 1.35757 * 120.04238 * 180.02562 * 17 16 15 19 19 C 1.34826 * 117.00002 * 185.99085 * 18 17 16 20 20 H 1.07994 * 120.00344 * 5.47335 * 19 18 17 21 21 C 1.38653 * 120.00056 * 185.48305 * 19 18 17 22 22 N 1.31556 * 120.00171 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99761 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47224 * 90.00485 * 23 21 19 25 25 H 1.48506 * 109.47542 * 210.00298 * 23 21 19 26 26 H 1.48501 * 109.47578 * 330.00348 * 23 21 19 27 27 C 1.38574 * 120.02088 * 179.72318 * 13 12 11 28 28 H 1.09005 * 109.47267 * 299.99763 * 1 2 3 29 29 H 1.08998 * 109.46973 * 60.00361 * 1 2 3 30 30 H 1.09004 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46889 * 239.99629 * 2 1 3 32 32 H 1.08998 * 109.47038 * 299.99600 * 3 2 1 33 33 H 1.08991 * 109.47168 * 60.00179 * 3 2 1 34 34 H 1.09004 * 109.46940 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46125 * 54.14204 * 5 4 2 36 36 H 1.09002 * 109.45466 * 294.17548 * 5 4 2 37 37 H 1.08999 * 109.50004 * 299.23328 * 6 5 4 38 38 H 1.09004 * 109.50167 * 179.12080 * 6 5 4 39 39 H 1.08999 * 109.52403 * 182.43916 * 7 6 5 40 40 H 1.09004 * 109.57730 * 62.28196 * 7 6 5 41 41 H 1.09005 * 109.50087 * 297.71396 * 8 7 6 42 42 H 1.08999 * 109.50528 * 177.59987 * 8 7 6 43 43 H 1.09003 * 109.47156 * 176.67015 * 11 9 4 44 44 H 1.09004 * 109.46810 * 56.67698 * 11 9 4 45 45 H 1.07993 * 119.96063 * 359.97345 * 14 13 12 46 46 H 1.07999 * 119.93441 * 179.97438 * 15 14 13 47 47 H 1.08001 * 119.98125 * 179.97438 * 16 15 14 48 48 H 0.97006 * 120.00156 * 179.97438 * 22 21 19 49 49 H 1.07991 * 120.06257 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6342 0.0299 2.4185 6 6 2.0322 -0.7911 3.6471 7 6 3.5448 -1.0279 3.6285 8 6 3.9264 -1.7384 2.3269 9 6 3.4735 -0.8899 1.1366 10 1 3.9731 0.0783 1.1697 11 6 3.8347 -1.6057 -0.1665 12 8 3.2421 -2.9059 -0.1760 13 6 3.4675 -3.6787 -1.2708 14 6 4.2433 -3.1943 -2.3151 15 6 4.4729 -3.9790 -3.4293 16 6 3.9308 -5.2473 -3.5078 17 6 3.1542 -5.7372 -2.4657 18 8 2.6220 -6.9837 -2.5426 19 6 1.7784 -7.3509 -1.5570 20 1 1.4847 -6.6356 -0.8031 21 6 1.2882 -8.6471 -1.5111 22 7 0.4656 -9.0056 -0.5491 23 14 1.7959 -9.8843 -2.8153 24 1 3.0209 -10.5968 -2.3716 25 1 0.6999 -10.8651 -3.0207 26 1 2.0705 -9.1748 -4.0906 27 6 2.9273 -4.9528 -1.3432 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 0.5557 0.1882 2.4211 36 1 2.1427 0.9937 2.4454 37 1 1.5135 -1.7496 3.6278 38 1 1.7600 -0.2475 4.5518 39 1 3.8268 -1.6490 4.4787 40 1 4.0650 -0.0718 3.6875 41 1 3.4375 -2.7119 2.2869 42 1 5.0075 -1.8717 2.2884 43 1 4.9182 -1.6996 -0.2411 44 1 3.4609 -1.0297 -1.0131 45 1 4.6674 -2.2028 -2.2572 46 1 5.0765 -3.5996 -4.2406 47 1 4.1114 -5.8584 -4.3798 48 1 0.1223 -9.9123 -0.5172 49 1 2.3265 -5.3326 -0.5302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853720514.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:18 Heat of formation + Delta-G solvation = -57.256744 kcal Electronic energy + Delta-G solvation = -27729.330350 eV Core-core repulsion = 24042.616313 eV Total energy + Delta-G solvation = -3686.714037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.45933 -40.72063 -39.52475 -37.28904 -36.04721 -34.45114 -33.21193 -31.17045 -31.12235 -30.39996 -28.11965 -27.63973 -27.22282 -25.24336 -23.50584 -23.42690 -22.11533 -21.48461 -20.19949 -19.82754 -19.40370 -17.61656 -17.45073 -16.93762 -16.81456 -16.57739 -15.89619 -15.86260 -15.51337 -15.29896 -15.25090 -15.04815 -14.81578 -14.59005 -14.49214 -14.16911 -14.04491 -13.69321 -13.56351 -13.10394 -12.96652 -12.84033 -12.70055 -12.65315 -12.63417 -12.31446 -12.11206 -12.05556 -12.00672 -11.85802 -11.65814 -11.54834 -11.42651 -11.12694 -10.95532 -10.88192 -9.39750 -9.08313 -8.95927 -8.50609 -6.25149 0.58087 0.66367 1.31161 1.36540 1.52832 2.26589 2.31574 2.75605 2.89329 3.09665 3.10636 3.67362 3.74592 3.88648 4.03025 4.04916 4.15507 4.19375 4.25402 4.30620 4.33885 4.36853 4.40605 4.45232 4.54309 4.60086 4.65040 4.70455 4.76075 4.80960 4.85130 4.88063 4.92683 4.94432 5.02111 5.06454 5.12917 5.26301 5.27448 5.30690 5.38104 5.38824 5.44233 5.53434 5.59045 5.75843 5.81758 6.09603 6.25123 6.28215 6.65641 6.82636 7.54092 8.61412 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.003309 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.385654 B = 8458.800969 C = 9117.008646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 C -0.178 4.178 4 N -0.543 5.543 5 C 0.055 3.945 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.113 4.113 9 C 0.094 3.906 10 H 0.083 0.917 11 C 0.056 3.944 12 O -0.313 6.313 13 C 0.167 3.833 14 C -0.269 4.269 15 C -0.028 4.028 16 C -0.229 4.229 17 C 0.156 3.844 18 O -0.237 6.237 19 C -0.402 4.402 20 H 0.073 0.927 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.975 3.025 24 H -0.265 1.265 25 H -0.265 1.265 26 H -0.259 1.259 27 C -0.280 4.280 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.154 0.846 46 H 0.168 0.832 47 H 0.133 0.867 48 H 0.286 0.714 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 23.767 2.360 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 C -0.236 4.236 4 N -0.269 5.269 5 C -0.072 4.072 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.014 4.014 10 H 0.100 0.900 11 C -0.019 4.019 12 O -0.227 6.227 13 C 0.121 3.879 14 C -0.288 4.288 15 C -0.046 4.046 16 C -0.248 4.248 17 C 0.107 3.893 18 O -0.144 6.144 19 C -0.478 4.478 20 H 0.090 0.910 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.796 3.204 24 H -0.190 1.190 25 H -0.190 1.190 26 H -0.183 1.183 27 C -0.300 4.300 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.171 0.829 46 H 0.185 0.815 47 H 0.151 0.849 48 H 0.095 0.905 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.598 22.933 2.504 24.288 hybrid contribution -0.077 -0.234 0.034 0.249 sum 7.521 22.699 2.538 24.047 Atomic orbital electron populations 1.21811 0.94413 1.01240 1.02352 1.21781 0.95986 0.93212 0.92979 1.22402 1.01488 0.96584 1.03163 1.62027 1.12198 1.50115 1.02536 1.22155 1.00949 0.95193 0.88926 1.21611 0.96267 1.00148 0.97674 1.21545 0.95995 1.00854 0.96805 1.21564 1.00625 0.98801 0.94152 1.21711 0.88756 0.97510 0.93413 0.89959 1.23219 0.98050 0.81551 0.99092 1.86175 1.71074 1.27636 1.37783 1.18759 0.92965 0.89271 0.86862 1.21205 1.08323 1.03288 0.96005 1.20985 0.95326 0.91009 0.97264 1.20492 1.06080 0.99124 0.99076 1.19354 0.91983 0.84360 0.93638 1.83536 1.56024 1.28110 1.46716 1.20662 1.22549 0.98353 1.06236 0.90975 1.25352 0.95460 0.98433 0.99558 1.69750 1.32344 1.21003 1.33271 0.85166 0.78537 0.77607 0.79061 1.18958 1.18970 1.18304 1.20339 1.12380 0.95976 1.01299 0.91703 0.91201 0.94441 0.91173 0.91196 0.91612 0.92144 0.90566 0.93152 0.93582 0.89852 0.91638 0.90527 0.93696 0.90703 0.90217 0.90828 0.82883 0.81456 0.84888 0.90479 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.09 71.98 0.65 -2.28 16 2 C 0.07 1.40 2.62 44.92 0.12 1.52 16 3 C -0.18 -2.53 8.47 71.98 0.61 -1.92 16 4 N -0.54 -12.44 4.37 -846.03 -3.70 -16.15 16 5 C 0.05 1.02 4.58 86.32 0.39 1.41 16 6 C -0.12 -2.27 6.09 30.64 0.19 -2.08 16 7 C -0.11 -2.06 6.00 30.67 0.18 -1.87 16 8 C -0.11 -2.57 5.21 30.64 0.16 -2.41 16 9 C 0.09 1.97 1.87 44.94 0.08 2.06 16 10 H 0.08 1.31 6.82 -2.39 -0.02 1.30 16 11 C 0.06 1.34 3.95 71.98 0.28 1.62 16 12 O -0.31 -11.21 9.23 -92.36 -0.85 -12.06 16 13 C 0.17 6.57 6.68 22.49 0.15 6.72 16 14 C -0.27 -8.30 9.04 22.40 0.20 -8.10 16 15 C -0.03 -0.85 10.03 22.24 0.22 -0.62 16 16 C -0.23 -8.89 9.99 22.40 0.22 -8.66 16 17 C 0.16 7.73 6.64 22.56 0.15 7.88 16 18 O -0.24 -13.42 8.58 -22.78 -0.20 -13.62 16 19 C -0.40 -24.96 9.90 67.92 0.67 -24.29 16 20 H 0.07 4.84 5.54 -2.91 -0.02 4.82 16 21 C 0.01 0.62 5.49 84.83 0.47 1.09 16 22 N -0.92 -57.22 13.96 21.61 0.30 -56.92 16 23 Si 0.97 46.50 28.62 68.60 1.96 48.47 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 27 C -0.28 -13.76 9.07 22.49 0.20 -13.55 16 28 H 0.06 1.18 6.38 -2.38 -0.02 1.16 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.67 5.66 -2.39 -0.01 1.65 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.86 6.47 -2.39 -0.02 0.84 16 34 H 0.06 0.78 6.76 -2.39 -0.02 0.76 16 35 H 0.08 1.41 6.15 -2.39 -0.01 1.39 16 36 H 0.05 0.76 6.58 -2.39 -0.02 0.74 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 1.38 7.58 -2.38 -0.02 1.37 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.61 7.66 -2.39 -0.02 1.59 16 44 H 0.07 1.59 5.47 -2.38 -0.01 1.58 16 45 H 0.15 3.45 6.29 -2.91 -0.02 3.44 16 46 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 47 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 48 H 0.29 16.12 8.31 -92.70 -0.77 15.35 16 49 H 0.10 5.61 5.72 -2.91 -0.02 5.59 16 Total: -1.00 -72.45 373.47 3.42 -69.03 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.94 Total: 24.74 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 4.97 Total: -43.49 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -3.40 Total: -73.06 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.05 Total: -25.68 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.96 Total: 48.47 kcal Total: -72.45 3.42 -69.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853720514.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.774 kcal (2) G-P(sol) polarization free energy of solvation -72.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds