Wall clock time and date at job start Tue Mar 31 2020 13:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46610 * 2 1 4 4 O 1.42897 * 109.46784 * 180.02562 * 3 2 1 5 5 C 1.35976 * 116.99660 * 180.02562 * 4 3 2 6 6 C 1.38736 * 119.98427 * 0.02562 * 5 4 3 7 7 C 1.38072 * 120.01167 * 179.97438 * 6 5 4 8 8 C 1.38868 * 119.98524 * 359.97438 * 7 6 5 9 9 N 1.40109 * 120.01039 * 179.97438 * 8 7 6 10 10 C 1.34771 * 120.00570 * 33.30503 * 9 8 7 11 11 O 1.21297 * 120.00065 * 5.26984 * 10 9 8 12 12 C 1.50699 * 120.00485 * 185.27564 * 10 9 8 13 13 C 1.52997 * 109.47642 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47466 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47466 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47306 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99863 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99616 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00280 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99514 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47505 * 59.99247 * 20 18 16 22 22 H 1.48503 * 109.47169 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47096 * 299.99396 * 20 18 16 24 24 C 1.38825 * 119.97137 * 0.02562 * 8 7 6 25 25 C 1.38110 * 119.98273 * 359.74199 * 24 8 7 26 26 C 1.50698 * 119.99343 * 180.27364 * 25 24 8 27 27 H 1.09002 * 109.47094 * 299.99263 * 1 2 3 28 28 H 1.08998 * 109.47823 * 60.00199 * 1 2 3 29 29 H 1.09005 * 109.46460 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47094 * 240.00736 * 2 1 3 31 31 H 1.09000 * 109.47320 * 119.99696 * 2 1 3 32 32 H 1.08999 * 109.46892 * 60.00036 * 3 2 1 33 33 H 1.09000 * 109.47031 * 299.99873 * 3 2 1 34 34 H 1.07999 * 119.99394 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.00468 * 180.02562 * 7 6 5 36 36 H 0.97000 * 119.99380 * 213.30328 * 9 8 7 37 37 H 1.09004 * 109.46789 * 299.99657 * 12 10 9 38 38 H 1.09004 * 109.47077 * 59.98935 * 12 10 9 39 39 H 1.08996 * 109.47226 * 300.00206 * 13 12 10 40 40 H 1.08998 * 109.46713 * 59.99579 * 13 12 10 41 41 H 1.08996 * 109.47369 * 300.00490 * 14 13 12 42 42 H 1.09006 * 109.46593 * 60.00336 * 14 13 12 43 43 H 1.09004 * 109.47108 * 300.00273 * 15 14 13 44 44 H 1.08998 * 109.46713 * 59.99950 * 15 14 13 45 45 H 0.97002 * 119.99767 * 180.02562 * 19 18 16 46 46 H 1.07994 * 120.00669 * 180.02562 * 24 8 7 47 47 H 1.09003 * 109.47458 * 270.24158 * 26 25 24 48 48 H 1.09009 * 109.46895 * 30.23528 * 26 25 24 49 49 H 1.08995 * 109.47007 * 150.23652 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4427 -0.0006 5 6 4.0861 2.6543 -0.0001 6 6 3.3301 3.8175 0.0014 7 6 3.9562 5.0481 0.0024 8 6 5.3430 5.1212 0.0024 9 7 5.9789 6.3697 0.0029 10 6 5.4157 7.4127 0.6442 11 8 4.4087 7.2492 1.3004 12 6 6.0367 8.7822 0.5459 13 6 5.2072 9.7781 1.3590 14 6 5.8381 11.1683 1.2597 15 6 5.0090 12.1640 2.0733 16 6 5.6301 13.5336 1.9750 17 1 6.5268 13.6791 1.3910 18 6 5.0541 14.6004 2.6315 19 7 3.9624 14.4230 3.3431 20 14 5.8236 16.2981 2.5091 21 1 5.8550 16.7261 1.0874 22 1 5.0189 17.2645 3.2989 23 1 7.2086 16.2535 3.0432 24 6 6.0988 3.9568 0.0009 25 6 5.4712 2.7265 0.0047 26 6 6.2915 1.4624 0.0093 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3632 -1.0278 0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 2.2516 3.7605 0.0018 35 1 3.3675 5.9536 0.0040 36 1 6.8246 6.4833 -0.4584 37 1 7.0530 8.7493 0.9387 38 1 6.0606 9.0963 -0.4976 39 1 4.1911 9.8109 0.9659 40 1 5.1830 9.4640 2.4025 41 1 6.8541 11.1352 1.6531 42 1 5.8625 11.4825 0.2162 43 1 3.9928 12.1972 1.6803 44 1 4.9849 11.8496 3.1167 45 1 3.5570 15.1737 3.8046 46 1 7.1773 4.0130 0.0013 47 1 6.4934 1.1565 -1.0173 48 1 7.2340 1.6427 0.5266 49 1 5.7408 0.6738 0.5218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863526631.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:38 Heat of formation + Delta-G solvation = -87.429632 kcal Electronic energy + Delta-G solvation = -25270.195025 eV Core-core repulsion = 21582.172593 eV Total energy + Delta-G solvation = -3688.022432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.86294 -39.81938 -37.78892 -35.16024 -34.76986 -33.98644 -32.84472 -32.54061 -30.18063 -28.98724 -27.34768 -26.64166 -25.58391 -23.07450 -23.02567 -21.53413 -21.45404 -20.01173 -19.99509 -18.28921 -17.57116 -16.86712 -16.64699 -16.20505 -16.12297 -15.56382 -14.70454 -14.68752 -14.54413 -14.47442 -14.14698 -13.95273 -13.58254 -13.26914 -13.16504 -12.83702 -12.63226 -12.55029 -12.44569 -12.20801 -12.16646 -11.81243 -11.71327 -11.60340 -11.59488 -11.14918 -11.00270 -10.96586 -10.54788 -10.53923 -10.42589 -10.08006 -9.78434 -9.61549 -9.23678 -9.01946 -8.99418 -8.30173 -7.83152 -5.95052 -3.97738 1.08477 1.16611 2.60110 2.85911 3.00259 3.35429 3.39863 3.42049 3.56945 4.39733 4.43361 4.48904 4.55417 4.60675 4.74194 4.78170 4.89162 4.98203 5.00476 5.09743 5.21086 5.23654 5.30278 5.31424 5.36392 5.40239 5.42584 5.49574 5.59930 5.60024 5.67720 5.74564 5.82289 5.98816 6.10841 6.15157 6.21158 6.27843 6.30892 6.51692 6.68273 6.81830 6.99730 7.17930 7.18842 7.30143 7.73640 7.89593 8.05950 8.11721 8.47711 9.09707 9.65869 11.16185 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.001721 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.803873 B =16267.566607 C =17270.048606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.057 3.943 4 O -0.315 6.315 5 C 0.110 3.890 6 C -0.184 4.184 7 C -0.086 4.086 8 C 0.120 3.880 9 N -0.680 5.680 10 C 0.511 3.489 11 O -0.517 6.517 12 C -0.137 4.137 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.112 4.112 25 C -0.100 4.100 26 C -0.102 4.102 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.410 0.590 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.131 0.869 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -31.215 -10.525 32.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.229 6.229 5 C 0.064 3.936 6 C -0.203 4.203 7 C -0.106 4.106 8 C 0.026 3.974 9 N -0.326 5.326 10 C 0.300 3.700 11 O -0.391 6.391 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.159 4.159 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.245 0.755 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.149 0.851 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.087 -31.347 -9.928 32.882 hybrid contribution 0.585 1.307 -0.227 1.450 sum 0.671 -30.040 -10.155 31.717 Atomic orbital electron populations 1.21700 0.94232 1.02529 1.02362 1.21473 0.96063 0.94831 1.03603 1.22877 0.78645 0.98746 1.01556 1.86018 1.21035 1.26851 1.88971 1.18719 0.91639 0.84102 0.99132 1.21118 1.00059 0.91718 1.07388 1.20979 0.93130 0.98157 0.98347 1.17653 0.91881 0.84908 1.02969 1.43709 1.25907 1.08300 1.54665 1.21324 0.84589 0.86556 0.77549 1.90720 1.24824 1.84732 1.38783 1.21819 1.01529 0.90706 1.03662 1.21468 0.98833 0.94253 0.99647 1.21651 0.99451 0.93195 1.00508 1.19094 0.95047 0.92579 0.95011 1.21248 1.10875 0.93612 1.30281 0.92792 1.25039 0.95029 0.99066 0.95399 1.69965 1.19873 1.31392 1.32206 0.86668 0.79232 0.84082 0.78043 1.20292 1.21317 1.20283 1.20589 0.99550 0.89973 1.03154 1.18971 0.90527 0.95525 1.05088 1.20584 0.98705 0.94386 1.02209 0.92264 0.92319 0.91735 0.90900 0.90866 0.91983 0.92062 0.85254 0.84387 0.75469 0.88828 0.88729 0.91727 0.91704 0.93416 0.93420 0.96590 0.96577 0.92988 0.85074 0.91424 0.91705 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.70 6.30 -26.73 -0.17 -0.87 16 3 C 0.06 0.42 4.74 37.16 0.18 0.60 16 4 O -0.31 -3.14 9.17 -19.66 -0.18 -3.32 16 5 C 0.11 1.20 6.66 -39.23 -0.26 0.94 16 6 C -0.18 -2.07 9.03 -39.46 -0.36 -2.43 16 7 C -0.09 -1.10 8.66 -39.41 -0.34 -1.44 16 8 C 0.12 1.40 6.28 -83.62 -0.53 0.88 16 9 N -0.68 -7.17 5.35 -9.83 -0.05 -7.22 16 10 C 0.51 6.98 7.57 -10.99 -0.08 6.90 16 11 O -0.52 -9.15 13.67 5.54 0.08 -9.07 16 12 C -0.14 -1.74 5.70 -27.89 -0.16 -1.90 16 13 C -0.10 -1.82 4.50 -26.74 -0.12 -1.94 16 14 C -0.11 -2.25 5.15 -26.74 -0.14 -2.39 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.11 -1.11 9.61 -39.41 -0.38 -1.49 16 25 C -0.10 -1.01 5.89 -104.50 -0.62 -1.63 16 26 C -0.10 -0.79 9.79 36.00 0.35 -0.44 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 35 H 0.14 1.96 6.41 -52.49 -0.34 1.63 16 36 H 0.41 2.84 8.82 -40.82 -0.36 2.48 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.42 8.09 -51.92 -0.42 0.00 16 49 H 0.07 0.57 7.52 -51.93 -0.39 0.18 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -34.40 402.13 -9.69 -44.09 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.51 Total: -1.68 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -2.80 Total: -18.96 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.68 Total: -34.01 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.10 Total: -12.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.40 -9.69 -44.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863526631.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.337 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds