Wall clock time and date at job start Tue Mar 31 2020 12:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46646 * 2 1 4 4 H 1.09000 * 109.47050 * 55.00158 * 3 2 1 5 5 N 1.46492 * 109.47363 * 295.00018 * 3 2 1 6 6 C 1.34781 * 119.99920 * 84.99933 * 5 3 2 7 7 O 1.21274 * 119.99803 * 0.02562 * 6 5 3 8 8 C 1.50697 * 119.99747 * 180.02562 * 6 5 3 9 9 C 1.53008 * 109.47135 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47127 * 180.02562 * 9 8 6 11 11 C 1.53008 * 109.46998 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47006 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00386 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99634 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99910 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99622 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47036 * 90.00137 * 16 14 12 18 18 H 1.48508 * 109.47103 * 209.99857 * 16 14 12 19 19 H 1.48495 * 109.47422 * 329.99554 * 16 14 12 20 20 C 1.52999 * 109.46626 * 174.99857 * 3 2 1 21 21 H 1.08993 * 109.47839 * 299.99931 * 20 3 2 22 22 O 1.42900 * 109.47290 * 60.00380 * 20 3 2 23 23 C 1.50706 * 109.46957 * 180.02562 * 20 3 2 24 24 C 1.38240 * 119.99879 * 279.73085 * 23 20 3 25 25 C 1.38232 * 119.99896 * 179.78658 * 24 23 20 26 26 C 1.38236 * 119.99993 * 0.43844 * 25 24 23 27 27 C 1.38235 * 119.99996 * 359.81502 * 26 25 24 28 28 C 1.38232 * 120.00136 * 99.99997 * 23 20 3 29 29 H 1.08990 * 109.47621 * 60.00181 * 1 2 3 30 30 H 1.09002 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47394 * 299.99282 * 1 2 3 32 32 H 1.08995 * 109.47505 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47175 * 119.99975 * 2 1 3 34 34 H 0.96998 * 120.00176 * 265.00572 * 5 3 2 35 35 H 1.09006 * 109.47530 * 299.99941 * 8 6 5 36 36 H 1.08998 * 109.47252 * 60.00349 * 8 6 5 37 37 H 1.09006 * 109.46593 * 300.00184 * 9 8 6 38 38 H 1.08998 * 109.47036 * 59.99885 * 9 8 6 39 39 H 1.08997 * 109.47506 * 299.99813 * 10 9 8 40 40 H 1.08998 * 109.47271 * 60.00011 * 10 9 8 41 41 H 1.08997 * 109.47144 * 300.00408 * 11 10 9 42 42 H 1.08998 * 109.46796 * 60.00093 * 11 10 9 43 43 H 0.97003 * 119.99488 * 180.02562 * 15 14 12 44 44 H 0.96708 * 114.00004 * 59.99496 * 22 20 3 45 45 H 1.08004 * 119.99799 * 359.97438 * 24 23 20 46 46 H 1.07998 * 120.00230 * 180.27199 * 25 24 23 47 47 H 1.08003 * 120.00251 * 179.82927 * 26 25 24 48 48 H 1.08000 * 120.00036 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.99874 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 7 1.6523 2.0976 -1.2517 6 6 0.4349 2.6644 -1.3668 7 8 -0.3394 2.6326 -0.4340 8 6 0.0360 3.3377 -2.6547 9 6 -1.3828 3.8945 -2.5209 10 6 -1.7880 4.5775 -3.8286 11 6 -3.2071 5.1338 -3.6951 12 6 -3.6060 5.8071 -4.9829 13 1 -2.9163 5.8357 -5.8134 14 6 -4.8512 6.3874 -5.1005 15 7 -5.6909 6.3529 -4.0889 16 14 -5.3453 7.2226 -6.6966 17 1 -5.9961 6.2329 -7.5923 18 1 -6.2957 8.3257 -6.4045 19 1 -4.1373 7.7732 -7.3619 20 6 3.5647 1.4444 0.1258 21 1 3.8531 0.9572 1.0571 22 8 4.1345 0.7378 -0.9779 23 6 4.0669 2.8653 0.1264 24 6 4.2042 3.5504 -1.0664 25 6 4.6607 4.8552 -1.0655 26 6 4.9886 5.4719 0.1275 27 6 4.8563 4.7851 1.3198 28 6 4.3956 3.4817 1.3192 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2717 2.1232 -1.9977 35 1 0.7274 4.1531 -2.8678 36 1 0.0670 2.6130 -3.4683 37 1 -2.0744 3.0794 -2.3076 38 1 -1.4135 4.6193 -1.7074 39 1 -1.0965 5.3925 -4.0424 40 1 -1.7575 3.8524 -4.6419 41 1 -3.8983 4.3186 -3.4815 42 1 -3.2380 5.8588 -2.8817 43 1 -6.5670 6.7609 -4.1718 44 1 3.9189 1.1167 -1.8411 45 1 3.9519 3.0672 -1.9988 46 1 4.7638 5.3919 -1.9970 47 1 5.3479 6.4904 0.1280 48 1 5.1128 5.2667 2.2518 49 1 4.2921 2.9451 2.2508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874750198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:31 Heat of formation + Delta-G solvation = -92.620901 kcal Electronic energy + Delta-G solvation = -26810.299321 eV Core-core repulsion = 23122.051778 eV Total energy + Delta-G solvation = -3688.247542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79521 -39.40011 -37.69604 -35.24157 -34.67008 -32.85059 -32.32536 -31.97558 -31.17711 -29.68759 -28.21316 -25.68048 -24.30808 -23.06615 -22.53572 -21.56177 -20.95925 -20.39374 -19.96777 -18.18673 -17.12149 -16.89457 -16.15975 -16.14506 -15.89024 -15.48907 -15.17220 -14.62634 -14.48359 -14.44020 -14.06719 -13.91478 -13.69388 -13.35111 -13.18802 -12.74876 -12.59233 -12.32375 -12.13952 -11.96654 -11.72522 -11.68144 -11.64725 -11.44503 -11.30413 -10.99200 -10.91941 -10.52596 -10.50588 -10.47838 -10.40627 -9.77238 -9.60937 -9.30914 -9.21706 -9.16889 -9.01799 -8.96789 -8.30107 -5.94875 -3.97370 0.95908 1.05580 2.73771 2.99600 3.34087 3.38887 3.40126 3.43236 3.92923 4.06781 4.40062 4.45204 4.49170 4.61075 4.76605 4.86386 4.89527 4.92092 5.02356 5.14577 5.27380 5.30954 5.33462 5.36823 5.40650 5.54350 5.59313 5.65824 5.73540 5.85383 5.89776 6.05447 6.09400 6.13471 6.14121 6.18522 6.29695 6.32163 6.40304 6.55247 6.62605 6.84499 7.01921 7.03037 7.20270 7.36266 7.74592 7.90708 8.06641 8.26677 8.48436 9.10403 9.66239 11.16466 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.002521 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.035770 B =11103.270512 C =12248.246367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.118 3.882 4 H 0.097 0.903 5 N -0.732 5.732 6 C 0.516 3.484 7 O -0.525 6.525 8 C -0.140 4.140 9 C -0.102 4.102 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.142 3.858 21 H 0.120 0.880 22 O -0.547 6.547 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.109 4.109 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.390 0.610 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.370 0.630 45 H 0.115 0.885 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.367 -10.037 9.826 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.013 3.987 4 H 0.115 0.885 5 N -0.387 5.387 6 C 0.303 3.697 7 O -0.400 6.400 8 C -0.180 4.180 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.082 3.918 21 H 0.137 0.863 22 O -0.352 6.352 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.135 4.135 28 C -0.127 4.127 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.218 0.782 45 H 0.133 0.867 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 24.846 -10.375 11.049 29.104 hybrid contribution -0.267 0.976 -1.631 1.919 sum 24.579 -9.399 9.418 27.950 Atomic orbital electron populations 1.21817 0.94518 1.00651 1.03386 1.21854 0.97081 0.95070 1.02525 1.21691 0.93580 0.94393 0.89035 0.88459 1.46106 1.17410 1.59265 1.15909 1.20981 0.80683 0.77459 0.90546 1.90716 1.50685 1.57874 1.40729 1.21808 1.00891 1.00791 0.94490 1.21436 0.92361 1.00448 0.99739 1.21646 1.00300 0.98412 0.94413 1.19089 0.89830 0.95872 0.96886 1.21284 0.99722 1.35520 0.99339 0.92777 1.25043 0.96725 0.96413 0.96390 1.69976 1.07651 1.45264 1.30568 0.86616 0.78375 0.79227 0.83898 1.20705 1.21254 1.19921 1.21213 0.90657 0.88352 0.91581 0.86279 1.86670 1.76049 1.55964 1.16510 1.20435 1.00280 0.96732 0.94117 1.20783 0.99861 0.94935 0.96967 1.21152 0.98748 0.94852 0.98442 1.21216 0.99755 0.99995 0.92652 1.21164 0.99397 0.94615 0.98289 1.20972 0.99041 0.95400 0.97318 0.92172 0.93580 0.92191 0.91323 0.91357 0.77495 0.89312 0.89263 0.91826 0.91852 0.93546 0.93523 0.96618 0.96628 0.93048 0.78200 0.86709 0.85727 0.85937 0.85896 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.51 37.16 0.32 -1.36 16 2 C -0.13 -1.13 5.39 -26.73 -0.14 -1.28 16 3 C 0.12 1.04 2.08 -67.93 -0.14 0.90 16 4 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 5 N -0.73 -6.58 4.14 -53.81 -0.22 -6.80 16 6 C 0.52 6.66 6.40 -10.98 -0.07 6.59 16 7 O -0.53 -8.81 13.12 5.56 0.07 -8.74 16 8 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 9 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.14 1.02 3.08 -27.88 -0.09 0.94 16 21 H 0.12 0.76 8.00 -51.93 -0.42 0.35 16 22 O -0.55 -3.97 12.61 -35.23 -0.44 -4.42 16 23 C -0.12 -0.93 4.88 -104.62 -0.51 -1.44 16 24 C -0.11 -0.82 8.32 -39.58 -0.33 -1.15 16 25 C -0.11 -0.91 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 28 C -0.11 -0.88 9.67 -39.58 -0.38 -1.26 16 29 H 0.06 0.81 5.65 -51.93 -0.29 0.51 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.77 7.85 -51.93 -0.41 0.36 16 32 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.39 2.44 5.47 -40.82 -0.22 2.22 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 44 H 0.37 1.74 6.12 45.56 0.28 2.02 16 45 H 0.12 0.61 5.51 -52.48 -0.29 0.32 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.76 8.04 -52.49 -0.42 0.34 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -34.61 390.99 -10.10 -44.71 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.61 Total: 1.03 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -3.51 Total: -21.72 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.51 Total: -33.67 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.37 Total: -13.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.61 -10.10 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874750198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.912 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds