Wall clock time and date at job start Tue Mar 31 2020 12:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46646 * 2 1 4 4 H 1.09000 * 109.47050 * 55.00158 * 3 2 1 5 5 N 1.46492 * 109.47363 * 295.00018 * 3 2 1 6 6 C 1.34781 * 119.99920 * 84.99933 * 5 3 2 7 7 O 1.21274 * 119.99803 * 0.02562 * 6 5 3 8 8 C 1.50697 * 119.99747 * 180.02562 * 6 5 3 9 9 C 1.53008 * 109.47135 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47127 * 180.02562 * 9 8 6 11 11 C 1.53008 * 109.46998 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47006 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00386 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99634 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99910 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99622 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47036 * 90.00137 * 16 14 12 18 18 H 1.48508 * 109.47103 * 209.99857 * 16 14 12 19 19 H 1.48495 * 109.47422 * 329.99554 * 16 14 12 20 20 C 1.52999 * 109.46626 * 174.99857 * 3 2 1 21 21 H 1.08993 * 109.47839 * 299.99931 * 20 3 2 22 22 O 1.42900 * 109.47290 * 60.00380 * 20 3 2 23 23 C 1.50706 * 109.46957 * 180.02562 * 20 3 2 24 24 C 1.38240 * 119.99879 * 279.73085 * 23 20 3 25 25 C 1.38232 * 119.99896 * 179.78658 * 24 23 20 26 26 C 1.38236 * 119.99993 * 0.43844 * 25 24 23 27 27 C 1.38235 * 119.99996 * 359.81502 * 26 25 24 28 28 C 1.38232 * 120.00136 * 99.99997 * 23 20 3 29 29 H 1.08990 * 109.47621 * 60.00181 * 1 2 3 30 30 H 1.09002 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47394 * 299.99282 * 1 2 3 32 32 H 1.08995 * 109.47505 * 240.00459 * 2 1 3 33 33 H 1.09000 * 109.47175 * 119.99975 * 2 1 3 34 34 H 0.96998 * 120.00176 * 265.00572 * 5 3 2 35 35 H 1.09006 * 109.47530 * 299.99941 * 8 6 5 36 36 H 1.08998 * 109.47252 * 60.00349 * 8 6 5 37 37 H 1.09006 * 109.46593 * 300.00184 * 9 8 6 38 38 H 1.08998 * 109.47036 * 59.99885 * 9 8 6 39 39 H 1.08997 * 109.47506 * 299.99813 * 10 9 8 40 40 H 1.08998 * 109.47271 * 60.00011 * 10 9 8 41 41 H 1.08997 * 109.47144 * 300.00408 * 11 10 9 42 42 H 1.08998 * 109.46796 * 60.00093 * 11 10 9 43 43 H 0.97003 * 119.99488 * 180.02562 * 15 14 12 44 44 H 0.96708 * 114.00004 * 59.99496 * 22 20 3 45 45 H 1.08004 * 119.99799 * 359.97438 * 24 23 20 46 46 H 1.07998 * 120.00230 * 180.27199 * 25 24 23 47 47 H 1.08003 * 120.00251 * 179.82927 * 26 25 24 48 48 H 1.08000 * 120.00036 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.99874 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 7 1.6523 2.0976 -1.2517 6 6 0.4349 2.6644 -1.3668 7 8 -0.3394 2.6326 -0.4340 8 6 0.0360 3.3377 -2.6547 9 6 -1.3828 3.8945 -2.5209 10 6 -1.7880 4.5775 -3.8286 11 6 -3.2071 5.1338 -3.6951 12 6 -3.6060 5.8071 -4.9829 13 1 -2.9163 5.8357 -5.8134 14 6 -4.8512 6.3874 -5.1005 15 7 -5.6909 6.3529 -4.0889 16 14 -5.3453 7.2226 -6.6966 17 1 -5.9961 6.2329 -7.5923 18 1 -6.2957 8.3257 -6.4045 19 1 -4.1373 7.7732 -7.3619 20 6 3.5647 1.4444 0.1258 21 1 3.8531 0.9572 1.0571 22 8 4.1345 0.7378 -0.9779 23 6 4.0669 2.8653 0.1264 24 6 4.2042 3.5504 -1.0664 25 6 4.6607 4.8552 -1.0655 26 6 4.9886 5.4719 0.1275 27 6 4.8563 4.7851 1.3198 28 6 4.3956 3.4817 1.3192 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2717 2.1232 -1.9977 35 1 0.7274 4.1531 -2.8678 36 1 0.0670 2.6130 -3.4683 37 1 -2.0744 3.0794 -2.3076 38 1 -1.4135 4.6193 -1.7074 39 1 -1.0965 5.3925 -4.0424 40 1 -1.7575 3.8524 -4.6419 41 1 -3.8983 4.3186 -3.4815 42 1 -3.2380 5.8588 -2.8817 43 1 -6.5670 6.7609 -4.1718 44 1 3.9189 1.1167 -1.8411 45 1 3.9519 3.0672 -1.9988 46 1 4.7638 5.3919 -1.9970 47 1 5.3479 6.4904 0.1280 48 1 5.1128 5.2667 2.2518 49 1 4.2921 2.9451 2.2508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874750198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:30 Heat of formation + Delta-G solvation = -114.340039 kcal Electronic energy + Delta-G solvation = -26811.241133 eV Core-core repulsion = 23122.051778 eV Total energy + Delta-G solvation = -3689.189355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55987 -40.19363 -38.38377 -36.67248 -35.72829 -34.61713 -33.47025 -32.56136 -31.74854 -31.31115 -29.04536 -27.38163 -25.14003 -24.24533 -23.52457 -22.26589 -21.97513 -21.54918 -21.30450 -18.81445 -18.42264 -17.98356 -17.62444 -16.98895 -16.72958 -16.50602 -16.14315 -15.92637 -15.81857 -15.16023 -14.93476 -14.68130 -14.52324 -14.49268 -14.23577 -13.87842 -13.68753 -13.57175 -13.38258 -13.25782 -12.92763 -12.80533 -12.71456 -12.48384 -12.34336 -12.17097 -12.12425 -12.05815 -11.92895 -11.72700 -11.37392 -11.34162 -11.13361 -11.11750 -10.67889 -10.55201 -10.04653 -9.80268 -9.64897 -8.18846 -6.31073 0.38385 0.49248 1.40203 1.42495 1.53532 1.73485 2.15773 2.41937 2.81450 3.13916 3.40574 3.44176 3.78741 3.85585 3.93956 4.05970 4.12433 4.13885 4.18535 4.20390 4.28359 4.41680 4.53991 4.60612 4.63400 4.69218 4.70517 4.82326 4.85596 4.88664 4.92024 5.05118 5.06945 5.12673 5.20116 5.20456 5.33547 5.37364 5.46601 5.50279 5.53684 5.57493 5.61537 5.62924 5.78296 5.88134 6.08748 6.25319 6.53290 6.61044 6.87590 7.33628 7.38645 8.93444 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.002521 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.035770 B =11103.270512 C =12248.246367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.122 3.878 4 H 0.075 0.925 5 N -0.711 5.711 6 C 0.515 3.485 7 O -0.572 6.572 8 C -0.131 4.131 9 C -0.093 4.093 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.259 1.259 20 C 0.156 3.844 21 H 0.130 0.870 22 O -0.552 6.552 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.128 4.128 26 C -0.132 4.132 27 C -0.131 4.131 28 C -0.124 4.124 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.407 0.593 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.060 0.940 41 H -0.016 1.016 42 H -0.017 1.017 43 H 0.263 0.737 44 H 0.381 0.619 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.706 -10.468 7.889 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.017 3.983 4 H 0.093 0.907 5 N -0.366 5.366 6 C 0.304 3.696 7 O -0.451 6.451 8 C -0.170 4.170 9 C -0.132 4.132 10 C -0.133 4.133 11 C -0.018 4.018 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.182 1.182 20 C 0.096 3.904 21 H 0.147 0.853 22 O -0.359 6.359 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.146 4.146 26 C -0.150 4.150 27 C -0.149 4.149 28 C -0.142 4.142 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.231 0.769 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.152 0.848 48 H 0.154 0.846 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 27.246 -10.822 9.081 30.691 hybrid contribution -0.999 1.107 -0.973 1.781 sum 26.247 -9.715 8.108 29.138 Atomic orbital electron populations 1.21758 0.96588 1.00434 1.01295 1.21817 0.94992 0.95273 1.03794 1.21667 0.94777 0.93907 0.87934 0.90728 1.45858 1.16330 1.57783 1.16672 1.20974 0.81322 0.77405 0.89944 1.90716 1.52321 1.59846 1.42178 1.21682 0.97759 1.02217 0.95365 1.21212 0.95498 0.99081 0.97363 1.21444 0.96454 0.99105 0.96283 1.19045 0.93244 0.94145 0.95318 1.21760 1.00319 1.35651 1.00235 0.91561 1.26096 0.96739 0.97111 1.00456 1.70135 1.08191 1.46322 1.33218 0.85389 0.78406 0.78023 0.78875 1.19696 1.20965 1.18249 1.21067 0.88912 0.88194 0.92209 0.85273 1.86666 1.75957 1.56098 1.17142 1.20603 1.00630 0.97136 0.94407 1.21097 0.99511 0.94996 0.97799 1.21446 0.98804 0.95308 0.99044 1.21505 0.99848 1.00773 0.92912 1.21432 0.99538 0.94878 0.99026 1.21261 0.99063 0.95744 0.98117 0.94277 0.92773 0.94305 0.90284 0.89761 0.75470 0.86721 0.86491 0.93928 0.94097 0.92188 0.92091 0.99796 0.99846 0.92861 0.76877 0.84459 0.84352 0.84783 0.84637 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.51 71.98 0.61 -2.67 16 2 C -0.12 -1.95 5.39 30.60 0.17 -1.79 16 3 C 0.12 1.98 2.08 44.99 0.09 2.07 16 4 H 0.07 1.62 7.58 -2.39 -0.02 1.60 16 5 N -0.71 -11.43 4.14 -442.55 -1.83 -13.26 16 6 C 0.52 12.87 6.40 87.66 0.56 13.43 16 7 O -0.57 -19.76 13.12 -3.01 -0.04 -19.80 16 8 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 9 C -0.09 -3.34 4.50 30.59 0.14 -3.20 16 10 C -0.10 -3.88 5.15 30.59 0.16 -3.72 16 11 C 0.02 1.08 4.97 29.85 0.15 1.23 16 12 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 13 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 14 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 15 N -0.94 -59.30 13.29 21.45 0.28 -59.01 16 16 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 C 0.16 1.91 3.08 29.85 0.09 2.00 16 21 H 0.13 1.36 8.00 -2.39 -0.02 1.34 16 22 O -0.55 -6.30 12.61 -148.98 -1.88 -8.18 16 23 C -0.13 -1.82 4.88 -19.86 -0.10 -1.92 16 24 C -0.12 -1.52 8.32 22.27 0.19 -1.33 16 25 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 26 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 27 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 28 C -0.12 -1.86 9.67 22.27 0.22 -1.64 16 29 H 0.04 1.05 5.65 -2.39 -0.01 1.04 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.03 7.85 -2.39 -0.02 1.01 16 32 H 0.08 1.16 7.83 -2.39 -0.02 1.14 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.41 3.76 5.47 -92.71 -0.51 3.25 16 35 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.04 1.67 8.10 -2.38 -0.02 1.65 16 38 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.38 2.19 6.12 -74.05 -0.45 1.74 16 45 H 0.14 1.00 5.51 -2.91 -0.02 0.98 16 46 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 49 H 0.14 1.54 8.04 -2.91 -0.02 1.52 16 Total: -1.00 -77.90 390.99 2.35 -75.56 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.02 Total: 14.57 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 3.81 Total: -36.73 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.55 Total: -72.27 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.92 Total: -27.98 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -77.90 2.35 -75.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874750198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.784 kcal (2) G-P(sol) polarization free energy of solvation -77.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds