Wall clock time and date at job start Tue Mar 31 2020 12:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46881 * 2 1 4 4 H 1.08997 * 109.46662 * 304.99189 * 3 2 1 5 5 N 1.46496 * 109.47378 * 65.00200 * 3 2 1 6 6 C 1.34774 * 119.99544 * 274.99692 * 5 3 2 7 7 O 1.21279 * 120.00472 * 0.02562 * 6 5 3 8 8 C 1.50706 * 120.00020 * 180.02562 * 6 5 3 9 9 C 1.52997 * 109.47238 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46947 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.46891 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46994 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99838 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99810 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00437 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99747 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47494 * 89.99947 * 16 14 12 18 18 H 1.48508 * 109.46676 * 209.99921 * 16 14 12 19 19 H 1.48502 * 109.46977 * 329.99219 * 16 14 12 20 20 C 1.53010 * 109.46752 * 185.00074 * 3 2 1 21 21 H 1.08997 * 109.46938 * 184.99963 * 20 3 2 22 22 O 1.42905 * 109.46616 * 304.99752 * 20 3 2 23 23 C 1.50694 * 109.47034 * 64.99513 * 20 3 2 24 24 C 1.38238 * 120.00419 * 279.72270 * 23 20 3 25 25 C 1.38228 * 120.00285 * 179.79174 * 24 23 20 26 26 C 1.38236 * 119.99830 * 0.44250 * 25 24 23 27 27 C 1.38239 * 120.00134 * 359.81063 * 26 25 24 28 28 C 1.38232 * 119.99851 * 100.00231 * 23 20 3 29 29 H 1.09002 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47271 * 300.00478 * 1 2 3 31 31 H 1.08995 * 109.46871 * 60.00368 * 1 2 3 32 32 H 1.08991 * 109.47312 * 239.99492 * 2 1 3 33 33 H 1.09004 * 109.46781 * 119.99920 * 2 1 3 34 34 H 0.96994 * 120.00700 * 94.99812 * 5 3 2 35 35 H 1.09001 * 109.46953 * 299.99667 * 8 6 5 36 36 H 1.09000 * 109.47318 * 59.99264 * 8 6 5 37 37 H 1.09001 * 109.46832 * 299.99686 * 9 8 6 38 38 H 1.09004 * 109.47261 * 59.99705 * 9 8 6 39 39 H 1.08992 * 109.47554 * 299.99696 * 10 9 8 40 40 H 1.08996 * 109.47261 * 60.00229 * 10 9 8 41 41 H 1.08998 * 109.47844 * 299.99997 * 11 10 9 42 42 H 1.09001 * 109.47248 * 60.00689 * 11 10 9 43 43 H 0.96999 * 120.00397 * 180.02562 * 15 14 12 44 44 H 0.96701 * 114.00358 * 60.00624 * 22 20 3 45 45 H 1.08001 * 119.99779 * 0.02562 * 24 23 20 46 46 H 1.07997 * 120.00526 * 180.28368 * 25 24 23 47 47 H 1.08002 * 120.00138 * 179.83412 * 26 25 24 48 48 H 1.07996 * 120.00154 * 179.97438 * 27 26 25 49 49 H 1.07998 * 120.00271 * 359.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3668 7 8 -0.3396 2.6319 0.4343 8 6 0.0366 3.3388 2.6543 9 6 -1.3827 3.8944 2.5210 10 6 -1.7874 4.5784 3.8283 11 6 -3.2065 5.1346 3.6947 12 6 -3.6055 5.8078 4.9827 13 1 -2.9157 5.8365 5.8132 14 6 -4.8511 6.3871 5.1006 15 7 -5.6909 6.3526 4.0891 16 14 -5.3453 7.2222 6.6968 17 1 -4.9578 8.6548 6.6467 18 1 -6.8153 7.1131 6.8780 19 1 -4.6561 6.5624 7.8347 20 6 3.5649 1.4443 -0.1258 21 1 3.9355 2.4655 -0.0367 22 8 4.1293 0.6404 0.9122 23 6 3.9589 0.8820 -1.4672 24 6 3.9843 -0.4862 -1.6627 25 6 4.3416 -1.0019 -2.8945 26 6 4.6824 -0.1495 -3.9281 27 6 4.6620 1.2186 -3.7310 28 6 4.3006 1.7343 -2.5005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2718 2.1233 1.9977 35 1 0.0679 2.6147 3.4685 36 1 0.7280 4.1542 2.8666 37 1 -1.4144 4.6183 1.7067 38 1 -2.0738 3.0786 2.3090 39 1 -1.7558 3.8542 4.6423 40 1 -1.0964 5.3941 4.0407 41 1 -3.2379 5.8589 2.8809 42 1 -3.8979 4.3191 3.4822 43 1 -6.5670 6.7605 4.1720 44 1 3.8426 -0.2830 0.8944 45 1 3.7214 -1.1522 -0.8542 46 1 4.3571 -2.0707 -3.0486 47 1 4.9641 -0.5524 -4.8897 48 1 4.9286 1.8845 -4.5384 49 1 4.2847 2.8032 -2.3466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874750199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:34 Heat of formation + Delta-G solvation = -93.095867 kcal Electronic energy + Delta-G solvation = -26264.045906 eV Core-core repulsion = 22575.777767 eV Total energy + Delta-G solvation = -3688.268138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77213 -39.54183 -37.71555 -35.21586 -34.64667 -32.83850 -32.37416 -31.95526 -31.24153 -29.73064 -28.12303 -25.61602 -24.57288 -23.15515 -22.48403 -21.85354 -20.71207 -20.22785 -19.92660 -18.19305 -17.14018 -16.59071 -16.29702 -16.13592 -15.92072 -15.67087 -15.46121 -14.72585 -14.44575 -14.38287 -14.14354 -13.87194 -13.79463 -13.27079 -13.15284 -12.80866 -12.57997 -12.49700 -12.10980 -11.98367 -11.74541 -11.65583 -11.58179 -11.47984 -11.26136 -11.02074 -10.94328 -10.57076 -10.50732 -10.46991 -10.38190 -9.73759 -9.58745 -9.33867 -9.32790 -9.19265 -8.98205 -8.94118 -8.28681 -5.93452 -3.95872 0.84683 0.95416 2.76011 3.02792 3.35255 3.35358 3.41199 3.44536 3.95424 4.19217 4.31151 4.35293 4.50522 4.55917 4.60491 4.68876 4.85278 4.93483 5.00311 5.06415 5.22272 5.28870 5.36356 5.40624 5.42455 5.48568 5.51950 5.56256 5.67161 5.82584 5.89644 5.98855 6.00058 6.07572 6.09907 6.17167 6.32109 6.33530 6.40096 6.52849 6.58143 6.87077 7.04953 7.05974 7.22773 7.49462 7.76219 7.92428 8.08125 8.31769 8.50046 9.11879 9.67639 11.17832 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.001873 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.226060 B =14945.148794 C =15017.653334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.119 3.881 4 H 0.097 0.903 5 N -0.730 5.730 6 C 0.512 3.488 7 O -0.530 6.530 8 C -0.139 4.139 9 C -0.102 4.102 10 C -0.111 4.111 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.141 3.859 21 H 0.114 0.886 22 O -0.551 6.551 23 C -0.113 4.113 24 C -0.110 4.110 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.106 4.106 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.403 0.597 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.375 0.625 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.105 -16.388 -14.092 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C 0.014 3.986 4 H 0.115 0.885 5 N -0.383 5.383 6 C 0.300 3.700 7 O -0.405 6.405 8 C -0.179 4.179 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.081 3.919 21 H 0.132 0.868 22 O -0.357 6.357 23 C -0.114 4.114 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.136 4.136 27 C -0.135 4.135 28 C -0.124 4.124 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.238 0.762 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.224 0.776 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 24.627 -15.789 -14.659 32.721 hybrid contribution -0.311 -0.036 0.945 0.995 sum 24.316 -15.825 -13.714 32.090 Atomic orbital electron populations 1.21761 0.94024 1.00672 1.03566 1.22140 0.98242 0.95984 1.02009 1.21566 0.93604 0.94387 0.89081 0.88533 1.46056 1.17422 1.58671 1.16159 1.21056 0.80811 0.77587 0.90548 1.90713 1.50807 1.58216 1.40783 1.21800 1.00771 1.00857 0.94489 1.21437 0.92418 1.00429 0.99709 1.21649 1.00276 0.98441 0.94458 1.19097 0.89868 0.95885 0.96883 1.21291 0.99674 1.35485 0.99363 0.92758 1.25046 0.96714 0.96439 0.96421 1.69975 1.07678 1.45177 1.30642 0.86610 0.77605 0.79863 0.83998 1.20721 1.21265 1.19934 1.21119 0.91433 0.95584 0.83718 0.86798 1.86622 1.72294 1.25059 1.51760 1.20352 1.00679 0.94212 0.96139 1.20920 0.99778 0.94449 0.97613 1.21135 0.99381 0.99935 0.93169 1.21218 0.99625 0.93655 0.99111 1.21180 0.99666 0.95502 0.97184 1.21037 0.98714 0.99761 0.92912 0.93583 0.92032 0.92081 0.90559 0.91851 0.76212 0.89245 0.89207 0.91849 0.91873 0.93507 0.93507 0.96612 0.96608 0.93069 0.77634 0.85986 0.85848 0.85966 0.85792 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.51 37.16 0.32 -1.31 16 2 C -0.15 -1.21 4.43 -26.73 -0.12 -1.33 16 3 C 0.12 1.07 2.12 -67.93 -0.14 0.92 16 4 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 5 N -0.73 -7.10 5.01 -53.80 -0.27 -7.37 16 6 C 0.51 6.83 6.40 -10.98 -0.07 6.76 16 7 O -0.53 -9.00 13.12 5.56 0.07 -8.93 16 8 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 9 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 16 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.14 1.03 3.18 -27.88 -0.09 0.94 16 21 H 0.11 0.83 8.00 -51.93 -0.42 0.42 16 22 O -0.55 -3.95 12.82 -35.23 -0.45 -4.40 16 23 C -0.11 -0.83 4.82 -104.63 -0.50 -1.34 16 24 C -0.11 -0.72 7.28 -39.58 -0.29 -1.00 16 25 C -0.12 -0.74 10.05 -39.59 -0.40 -1.14 16 26 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 27 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 28 C -0.11 -0.78 9.67 -39.58 -0.38 -1.16 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.83 5.64 -51.93 -0.29 0.54 16 31 H 0.06 0.79 7.85 -51.93 -0.41 0.39 16 32 H 0.08 0.56 5.18 -51.93 -0.27 0.29 16 33 H 0.06 0.44 7.00 -51.93 -0.36 0.08 16 34 H 0.40 3.16 8.38 -40.82 -0.34 2.82 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 44 H 0.37 1.80 5.77 45.56 0.26 2.06 16 45 H 0.12 0.57 5.82 -52.49 -0.31 0.26 16 46 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.76 8.04 -52.49 -0.42 0.34 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -34.31 389.23 -10.07 -44.37 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.56 Total: 1.28 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.44 Total: -20.90 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.47 Total: -34.33 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.38 Total: -13.33 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.31 -10.07 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874750199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.724 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds