Wall clock time and date at job start Tue Mar 31 2020 13:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52995 * 109.47111 * 2 1 4 4 O 1.42897 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.35895 * 117.00522 * 180.02562 * 4 3 2 6 6 C 1.38762 * 120.05096 * 359.72014 * 5 4 3 7 7 C 1.38123 * 119.94004 * 179.74615 * 6 5 4 8 8 C 1.38288 * 120.05934 * 0.51324 * 7 6 5 9 9 C 1.50694 * 119.94784 * 179.74508 * 8 7 6 10 10 N 1.46899 * 109.47085 * 270.01793 * 9 8 7 11 11 C 1.47842 * 110.99921 * 290.84148 * 10 9 8 12 12 C 1.54909 * 104.79622 * 213.63716 * 11 10 9 13 13 C 1.55139 * 101.65372 * 37.06880 * 12 11 10 14 14 O 1.42907 * 110.70356 * 82.73244 * 13 12 11 15 15 C 1.50702 * 110.85705 * 205.89113 * 13 12 11 16 16 H 1.08001 * 119.99553 * 20.84851 * 15 13 12 17 17 C 1.37875 * 119.99901 * 200.83888 * 15 13 12 18 18 N 1.31523 * 119.99577 * 173.63167 * 17 15 13 19 19 Si 1.86797 * 120.00205 * 353.62960 * 17 15 13 20 20 H 1.48501 * 109.46778 * 86.34050 * 19 17 15 21 21 H 1.48506 * 109.46904 * 206.33440 * 19 17 15 22 22 H 1.48497 * 109.47248 * 326.33657 * 19 17 15 23 23 C 1.47448 * 110.99818 * 169.99812 * 10 9 8 24 24 C 1.38250 * 120.10927 * 359.76003 * 8 7 6 25 25 C 1.38169 * 120.05689 * 359.97438 * 24 8 7 26 26 C 1.50696 * 120.02893 * 180.02562 * 25 24 8 27 27 H 1.08990 * 109.46843 * 300.00384 * 1 2 3 28 28 H 1.08999 * 109.46557 * 59.99973 * 1 2 3 29 29 H 1.08994 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47291 * 239.99624 * 2 1 3 31 31 H 1.08999 * 109.46557 * 120.00027 * 2 1 3 32 32 H 1.09003 * 109.46805 * 299.99864 * 3 2 1 33 33 H 1.09002 * 109.47350 * 59.99660 * 3 2 1 34 34 H 1.07991 * 120.03103 * 359.97438 * 6 5 4 35 35 H 1.08007 * 119.97232 * 180.24899 * 7 6 5 36 36 H 1.09003 * 109.47406 * 30.01696 * 9 8 7 37 37 H 1.09000 * 109.47426 * 150.01488 * 9 8 7 38 38 H 1.09000 * 110.37660 * 332.46445 * 11 10 9 39 39 H 1.09000 * 110.37321 * 94.80435 * 11 10 9 40 40 H 1.09000 * 110.99006 * 278.97493 * 12 11 10 41 41 H 1.09000 * 111.02304 * 155.17661 * 12 11 10 42 42 H 0.96692 * 114.00076 * 61.06047 * 14 13 12 43 43 H 0.96993 * 119.99579 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.88733 * 242.66014 * 23 10 9 45 45 H 1.08994 * 109.88945 * 3.85220 * 23 10 9 46 46 H 1.08003 * 119.97046 * 180.02562 * 24 8 7 47 47 H 1.08999 * 109.47019 * 269.97663 * 26 25 24 48 48 H 1.09003 * 109.46891 * 29.97829 * 26 25 24 49 49 H 1.09003 * 109.47103 * 149.97562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0861 2.6533 -0.0001 6 6 3.3315 3.8178 -0.0050 7 6 3.9610 5.0472 0.0008 8 6 5.3420 5.1183 0.0007 9 6 6.0262 6.4609 0.0012 10 7 6.2480 6.8980 -1.3836 11 6 7.2670 6.0576 -2.0477 12 6 8.0064 7.0193 -3.0110 13 6 8.0436 8.3285 -2.1794 14 8 9.1352 8.3104 -1.2572 15 6 8.1292 9.5339 -3.0798 16 1 7.8240 9.4587 -4.1131 17 6 8.5969 10.7325 -2.5844 18 7 8.7902 11.7490 -3.3964 19 14 8.9559 10.9129 -0.7602 20 1 10.3398 10.4529 -0.4803 21 1 8.8192 12.3386 -0.3674 22 1 7.9941 10.0909 0.0173 23 6 6.6952 8.3023 -1.4293 24 6 6.0961 3.9595 -0.0002 25 6 5.4712 2.7272 -0.0004 26 6 6.2938 1.4646 -0.0008 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8935 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.2529 3.7628 -0.0096 35 1 3.3741 5.9539 0.0011 36 1 5.3984 7.1885 0.5157 37 1 6.9843 6.3804 0.5147 38 1 7.9606 5.6498 -1.3123 39 1 6.7895 5.2531 -2.6071 40 1 7.4422 7.1584 -3.9331 41 1 9.0143 6.6624 -3.2225 42 1 10.0036 8.2435 -1.6771 43 1 9.1195 12.5921 -3.0480 44 1 5.9624 8.9076 -1.9627 45 1 6.8269 8.6826 -0.4164 46 1 7.1745 4.0177 0.0001 47 1 6.4917 1.1602 -1.0286 48 1 7.2380 1.6460 0.5127 49 1 5.7466 0.6743 0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877606261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:09 Heat of formation + Delta-G solvation = -68.902345 kcal Electronic energy + Delta-G solvation = -27032.039608 eV Core-core repulsion = 23344.820579 eV Total energy + Delta-G solvation = -3687.219028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.39323 -38.90719 -37.69496 -35.23490 -34.22262 -32.85913 -32.30550 -31.40933 -29.30739 -28.24251 -27.20470 -26.76287 -25.13384 -23.80696 -22.79767 -21.20158 -21.09392 -19.96658 -19.62738 -18.10338 -17.29431 -16.55166 -16.33420 -15.65171 -15.33282 -14.99110 -14.63676 -14.52115 -14.39855 -14.20937 -13.79046 -13.53358 -13.36782 -13.12284 -12.90451 -12.67537 -12.50934 -12.41387 -12.27896 -12.14302 -11.86612 -11.79569 -11.63974 -11.48461 -11.45955 -11.06534 -10.80522 -10.72267 -10.64968 -10.59033 -10.51861 -10.14079 -10.10181 -9.14581 -8.78934 -8.55203 -8.49187 -8.01450 -7.69066 -6.14587 -4.24172 1.36766 1.45140 3.00927 3.45788 3.52005 3.67102 3.72130 4.48964 4.49373 4.51221 4.66792 4.75275 4.81614 4.83352 4.98145 5.00772 5.03472 5.12911 5.20501 5.24577 5.31884 5.34409 5.50686 5.53154 5.57248 5.59545 5.63424 5.65474 5.72721 5.78880 5.83633 5.94464 5.97706 6.02056 6.18812 6.22686 6.28482 6.36097 6.42931 6.62553 6.73209 6.77185 6.81176 6.87961 7.21050 7.35225 7.45063 7.64704 7.66123 8.19762 8.72239 8.89451 9.48277 10.94982 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028567 B = 0.002539 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.905391 B =11026.614455 C =11261.952042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.316 6.316 5 C 0.120 3.880 6 C -0.205 4.205 7 C -0.066 4.066 8 C -0.096 4.096 9 C 0.091 3.909 10 N -0.525 5.525 11 C 0.048 3.952 12 C -0.143 4.143 13 C 0.206 3.794 14 O -0.570 6.570 15 C -0.547 4.547 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.891 5.891 19 Si 0.941 3.059 20 H -0.291 1.291 21 H -0.324 1.324 22 H -0.269 1.269 23 C 0.051 3.949 24 C -0.075 4.075 25 C -0.119 4.119 26 C -0.102 4.102 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.369 0.631 43 H 0.265 0.735 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.741 -21.892 8.458 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.230 6.230 5 C 0.075 3.925 6 C -0.224 4.224 7 C -0.085 4.085 8 C -0.097 4.097 9 C -0.037 4.037 10 N -0.250 5.250 11 C -0.079 4.079 12 C -0.181 4.181 13 C 0.166 3.834 14 O -0.378 6.378 15 C -0.585 4.585 16 H 0.097 0.903 17 C -0.132 4.132 18 N -0.527 5.527 19 Si 0.776 3.224 20 H -0.219 1.219 21 H -0.255 1.255 22 H -0.195 1.195 23 C -0.076 4.076 24 C -0.094 4.094 25 C -0.120 4.120 26 C -0.159 4.159 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.217 0.783 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.143 0.857 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.584 -21.904 8.595 26.684 hybrid contribution 1.156 0.527 0.816 1.510 sum -11.429 -21.377 9.411 26.003 Atomic orbital electron populations 1.21693 0.94315 1.02467 1.02271 1.21475 0.95985 0.94979 1.03610 1.22832 0.78889 0.98558 1.01391 1.86003 1.20848 1.27194 1.88953 1.18726 0.91659 0.83926 0.98188 1.21156 0.99621 0.92350 1.09292 1.20798 0.93998 0.96854 0.96829 1.19758 0.93569 0.94851 1.01530 1.21169 0.98644 0.92829 0.91095 1.63742 1.43849 1.03644 1.13726 1.22977 0.92299 0.96081 0.96570 1.23248 0.99395 0.96572 0.98891 1.20377 0.83625 0.93277 0.86149 1.86127 1.17678 1.94911 1.39066 1.21271 1.45926 0.93222 0.98074 0.90348 1.25128 0.93558 0.95349 0.99158 1.69978 1.43898 1.03139 1.35682 0.85875 0.79082 0.73255 0.84199 1.21850 1.25460 1.19518 1.23350 0.96497 0.87337 1.00404 1.20814 0.99640 0.90608 0.98340 1.19172 0.90517 0.95963 1.06313 1.20570 0.98628 0.94536 1.02126 0.92384 0.92303 0.91778 0.90858 0.90944 0.92097 0.92217 0.85852 0.85752 0.90570 0.93968 0.94300 0.91698 0.90630 0.91928 0.78294 0.92569 0.89112 0.92797 0.85734 0.91572 0.91867 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.81 6.30 -26.73 -0.17 -0.97 16 3 C 0.06 0.49 4.74 37.16 0.18 0.67 16 4 O -0.32 -3.62 9.18 -19.41 -0.18 -3.80 16 5 C 0.12 1.52 6.66 -39.21 -0.26 1.26 16 6 C -0.21 -2.50 9.04 -39.43 -0.36 -2.86 16 7 C -0.07 -0.88 9.69 -39.61 -0.38 -1.26 16 8 C -0.10 -1.39 5.10 -104.60 -0.53 -1.92 16 9 C 0.09 1.46 4.72 -4.98 -0.02 1.44 16 10 N -0.53 -9.71 5.15 -232.69 -1.20 -10.91 16 11 C 0.05 0.85 5.60 -2.30 -0.01 0.84 16 12 C -0.14 -2.79 6.23 -24.59 -0.15 -2.95 16 13 C 0.21 4.66 0.68 -89.95 -0.06 4.60 16 14 O -0.57 -12.58 8.88 -35.23 -0.31 -12.89 16 15 C -0.55 -14.82 8.71 -34.44 -0.30 -15.12 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 18 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 19 Si 0.94 23.60 24.90 -169.99 -4.23 19.37 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.32 -8.31 7.11 56.52 0.40 -7.91 16 22 H -0.27 -6.63 5.18 56.52 0.29 -6.34 16 23 C 0.05 1.10 5.64 -2.83 -0.02 1.08 16 24 C -0.08 -1.02 8.57 -39.60 -0.34 -1.36 16 25 C -0.12 -1.53 5.89 -104.47 -0.62 -2.14 16 26 C -0.10 -1.07 9.79 36.00 0.35 -0.72 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 33 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 34 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 35 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.08 1.18 7.98 -51.93 -0.41 0.76 16 37 H 0.04 0.70 7.79 -51.93 -0.40 0.30 16 38 H 0.04 0.66 6.99 -51.93 -0.36 0.29 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.54 7.99 -51.93 -0.42 1.12 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.37 7.25 9.06 45.56 0.41 7.66 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 2.05 7.82 -51.93 -0.41 1.64 16 45 H 0.05 1.20 5.70 -51.93 -0.30 0.90 16 46 H 0.12 1.59 7.48 -52.48 -0.39 1.20 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 49 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -31.02 381.74 -9.50 -40.52 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.68 Total: 5.84 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.42 Total: -17.86 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.43 Total: -36.93 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.49 Total: -16.68 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.23 Total: 19.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.02 -9.50 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877606261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.381 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds