Wall clock time and date at job start Tue Mar 31 2020 13:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52995 * 109.47111 * 2 1 4 4 O 1.42897 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.35895 * 117.00522 * 180.02562 * 4 3 2 6 6 C 1.38762 * 120.05096 * 359.72014 * 5 4 3 7 7 C 1.38123 * 119.94004 * 179.74615 * 6 5 4 8 8 C 1.38288 * 120.05934 * 0.51324 * 7 6 5 9 9 C 1.50694 * 119.94784 * 179.74508 * 8 7 6 10 10 N 1.46899 * 109.47085 * 270.01793 * 9 8 7 11 11 C 1.47842 * 110.99921 * 290.84148 * 10 9 8 12 12 C 1.54909 * 104.79622 * 213.63716 * 11 10 9 13 13 C 1.55139 * 101.65372 * 37.06880 * 12 11 10 14 14 O 1.42907 * 110.70356 * 82.73244 * 13 12 11 15 15 C 1.50702 * 110.85705 * 205.89113 * 13 12 11 16 16 H 1.08001 * 119.99553 * 20.84851 * 15 13 12 17 17 C 1.37875 * 119.99901 * 200.83888 * 15 13 12 18 18 N 1.31523 * 119.99577 * 173.63167 * 17 15 13 19 19 Si 1.86797 * 120.00205 * 353.62960 * 17 15 13 20 20 H 1.48501 * 109.46778 * 86.34050 * 19 17 15 21 21 H 1.48506 * 109.46904 * 206.33440 * 19 17 15 22 22 H 1.48497 * 109.47248 * 326.33657 * 19 17 15 23 23 C 1.47448 * 110.99818 * 169.99812 * 10 9 8 24 24 C 1.38250 * 120.10927 * 359.76003 * 8 7 6 25 25 C 1.38169 * 120.05689 * 359.97438 * 24 8 7 26 26 C 1.50696 * 120.02893 * 180.02562 * 25 24 8 27 27 H 1.08990 * 109.46843 * 300.00384 * 1 2 3 28 28 H 1.08999 * 109.46557 * 59.99973 * 1 2 3 29 29 H 1.08994 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47291 * 239.99624 * 2 1 3 31 31 H 1.08999 * 109.46557 * 120.00027 * 2 1 3 32 32 H 1.09003 * 109.46805 * 299.99864 * 3 2 1 33 33 H 1.09002 * 109.47350 * 59.99660 * 3 2 1 34 34 H 1.07991 * 120.03103 * 359.97438 * 6 5 4 35 35 H 1.08007 * 119.97232 * 180.24899 * 7 6 5 36 36 H 1.09003 * 109.47406 * 30.01696 * 9 8 7 37 37 H 1.09000 * 109.47426 * 150.01488 * 9 8 7 38 38 H 1.09000 * 110.37660 * 332.46445 * 11 10 9 39 39 H 1.09000 * 110.37321 * 94.80435 * 11 10 9 40 40 H 1.09000 * 110.99006 * 278.97493 * 12 11 10 41 41 H 1.09000 * 111.02304 * 155.17661 * 12 11 10 42 42 H 0.96692 * 114.00076 * 61.06047 * 14 13 12 43 43 H 0.96993 * 119.99579 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.88733 * 242.66014 * 23 10 9 45 45 H 1.08994 * 109.88945 * 3.85220 * 23 10 9 46 46 H 1.08003 * 119.97046 * 180.02562 * 24 8 7 47 47 H 1.08999 * 109.47019 * 269.97663 * 26 25 24 48 48 H 1.09003 * 109.46891 * 29.97829 * 26 25 24 49 49 H 1.09003 * 109.47103 * 149.97562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0861 2.6533 -0.0001 6 6 3.3315 3.8178 -0.0050 7 6 3.9610 5.0472 0.0008 8 6 5.3420 5.1183 0.0007 9 6 6.0262 6.4609 0.0012 10 7 6.2480 6.8980 -1.3836 11 6 7.2670 6.0576 -2.0477 12 6 8.0064 7.0193 -3.0110 13 6 8.0436 8.3285 -2.1794 14 8 9.1352 8.3104 -1.2572 15 6 8.1292 9.5339 -3.0798 16 1 7.8240 9.4587 -4.1131 17 6 8.5969 10.7325 -2.5844 18 7 8.7902 11.7490 -3.3964 19 14 8.9559 10.9129 -0.7602 20 1 10.3398 10.4529 -0.4803 21 1 8.8192 12.3386 -0.3674 22 1 7.9941 10.0909 0.0173 23 6 6.6952 8.3023 -1.4293 24 6 6.0961 3.9595 -0.0002 25 6 5.4712 2.7272 -0.0004 26 6 6.2938 1.4646 -0.0008 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8935 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.2529 3.7628 -0.0096 35 1 3.3741 5.9539 0.0011 36 1 5.3984 7.1885 0.5157 37 1 6.9843 6.3804 0.5147 38 1 7.9606 5.6498 -1.3123 39 1 6.7895 5.2531 -2.6071 40 1 7.4422 7.1584 -3.9331 41 1 9.0143 6.6624 -3.2225 42 1 10.0036 8.2435 -1.6771 43 1 9.1195 12.5921 -3.0480 44 1 5.9624 8.9076 -1.9627 45 1 6.8269 8.6826 -0.4164 46 1 7.1745 4.0177 0.0001 47 1 6.4917 1.1602 -1.0286 48 1 7.2380 1.6460 0.5127 49 1 5.7466 0.6743 0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877606261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:08 Heat of formation + Delta-G solvation = -89.302043 kcal Electronic energy + Delta-G solvation = -27032.924205 eV Core-core repulsion = 23344.820579 eV Total energy + Delta-G solvation = -3688.103626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.33659 -40.37681 -38.75229 -36.75573 -34.89939 -34.44576 -33.78194 -32.67525 -30.61064 -29.98838 -27.91946 -27.70408 -26.63060 -25.36659 -23.54232 -22.41907 -21.92440 -21.42278 -21.17704 -19.30199 -18.96056 -17.30543 -17.22408 -17.15884 -17.09719 -16.58018 -15.94181 -15.51710 -15.37648 -15.25702 -15.11664 -14.85732 -14.58131 -14.18314 -14.07122 -14.00387 -13.75543 -13.54875 -13.47388 -13.18750 -13.01468 -12.96318 -12.86711 -12.57490 -12.46068 -12.26025 -12.11377 -12.08841 -12.05832 -11.90728 -11.82245 -11.57476 -11.47906 -11.18900 -10.62454 -10.34542 -9.73848 -9.25081 -8.92771 -8.34657 -6.46067 0.40397 0.44750 1.45315 1.47792 1.67108 2.24269 2.41643 2.68678 2.98867 3.28760 3.51972 3.78832 3.84470 3.89203 3.95879 3.97914 4.07910 4.24970 4.28392 4.30181 4.35967 4.38345 4.44780 4.54689 4.55641 4.62145 4.68170 4.72756 4.75193 4.79366 4.83527 4.85400 5.00093 5.01326 5.10936 5.12244 5.18657 5.26965 5.30032 5.34802 5.39738 5.40306 5.49130 5.58962 5.72507 5.86554 6.02531 6.09193 6.21249 6.48669 6.61221 6.99435 7.31863 8.78904 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028567 B = 0.002539 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.905391 B =11026.614455 C =11261.952042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.051 3.949 4 O -0.324 6.324 5 C 0.115 3.885 6 C -0.206 4.206 7 C -0.074 4.074 8 C -0.112 4.112 9 C 0.094 3.906 10 N -0.528 5.528 11 C 0.059 3.941 12 C -0.138 4.138 13 C 0.203 3.797 14 O -0.569 6.569 15 C -0.544 4.544 16 H 0.040 0.960 17 C 0.023 3.977 18 N -0.938 5.938 19 Si 1.000 3.000 20 H -0.280 1.280 21 H -0.333 1.333 22 H -0.261 1.261 23 C 0.059 3.941 24 C -0.080 4.080 25 C -0.129 4.129 26 C -0.099 4.099 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.381 0.619 43 H 0.266 0.734 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.131 0.869 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 -24.344 10.026 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.024 4.024 4 O -0.239 6.239 5 C 0.070 3.930 6 C -0.224 4.224 7 C -0.093 4.093 8 C -0.112 4.112 9 C -0.033 4.033 10 N -0.252 5.252 11 C -0.068 4.068 12 C -0.177 4.177 13 C 0.162 3.838 14 O -0.378 6.378 15 C -0.582 4.582 16 H 0.058 0.942 17 C -0.176 4.176 18 N -0.576 5.576 19 Si 0.833 3.167 20 H -0.206 1.206 21 H -0.265 1.265 22 H -0.187 1.187 23 C -0.069 4.069 24 C -0.098 4.098 25 C -0.130 4.130 26 C -0.156 4.156 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.149 0.851 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.164 -24.395 10.163 29.524 hybrid contribution 1.256 1.194 0.256 1.752 sum -11.908 -23.201 10.418 28.082 Atomic orbital electron populations 1.21688 0.93016 1.03185 1.02595 1.21481 0.96990 0.93772 1.03460 1.23090 0.77365 0.99931 1.01971 1.86005 1.22522 1.26664 1.88673 1.18919 0.91966 0.84532 0.97613 1.21364 1.00748 0.91773 1.08549 1.20942 0.93805 0.97666 0.96856 1.19644 0.94055 0.94115 1.03411 1.21151 0.98789 0.93981 0.89404 1.63717 1.43809 1.02049 1.15659 1.22931 0.92141 0.95518 0.96250 1.23165 1.00680 0.95477 0.98335 1.20280 0.84397 0.92766 0.86331 1.86080 1.18214 1.94732 1.38811 1.21521 1.44460 0.95053 0.97160 0.94182 1.25867 0.93785 0.95099 1.02852 1.70095 1.46111 1.03902 1.37540 0.84907 0.79497 0.72637 0.79637 1.20639 1.26500 1.18676 1.23050 0.95264 0.89258 0.99326 1.20891 0.99961 0.90597 0.98368 1.19449 0.91053 0.96540 1.05958 1.20584 0.98840 0.93562 1.02577 0.91940 0.92108 0.90903 0.91165 0.90967 0.91693 0.91377 0.83819 0.85129 0.90322 0.94225 0.92993 0.90413 0.91969 0.90175 0.77002 0.92535 0.91092 0.93411 0.85135 0.91140 0.90730 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.99 0.71 -0.44 16 2 C -0.12 -1.34 6.30 30.60 0.19 -1.15 16 3 C 0.05 0.75 4.74 71.98 0.34 1.09 16 4 O -0.32 -6.79 9.18 -92.36 -0.85 -7.64 16 5 C 0.12 2.69 6.66 22.51 0.15 2.84 16 6 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 7 C -0.07 -1.84 9.69 22.25 0.22 -1.62 16 8 C -0.11 -3.01 5.10 -19.85 -0.10 -3.11 16 9 C 0.09 2.87 4.72 85.56 0.40 3.28 16 10 N -0.53 -18.74 5.15 -890.11 -4.59 -23.33 16 11 C 0.06 1.94 5.60 86.77 0.49 2.42 16 12 C -0.14 -5.23 6.23 31.98 0.20 -5.03 16 13 C 0.20 9.01 0.68 -10.36 -0.01 9.01 16 14 O -0.57 -23.92 8.88 -148.98 -1.32 -25.24 16 15 C -0.54 -29.97 8.71 25.60 0.22 -29.74 16 16 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 17 C 0.02 1.33 5.46 84.65 0.46 1.80 16 18 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 19 Si 1.00 48.61 24.90 68.60 1.71 50.32 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.33 -16.63 7.11 99.48 0.71 -15.92 16 22 H -0.26 -12.26 5.18 99.48 0.52 -11.74 16 23 C 0.06 2.49 5.64 86.65 0.49 2.98 16 24 C -0.08 -1.99 8.57 22.26 0.19 -1.80 16 25 C -0.13 -3.05 5.89 -19.77 -0.12 -3.17 16 26 C -0.10 -1.87 9.79 71.23 0.70 -1.17 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.90 7.65 -2.39 -0.02 0.88 16 33 H 0.07 0.88 7.67 -2.39 -0.02 0.87 16 34 H 0.14 2.49 6.30 -2.92 -0.02 2.47 16 35 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.08 2.32 7.98 -2.39 -0.02 2.31 16 37 H 0.04 1.23 7.79 -2.39 -0.02 1.21 16 38 H 0.05 1.60 6.99 -2.39 -0.02 1.58 16 39 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.51 7.99 -2.39 -0.02 2.49 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.38 14.06 9.06 -74.06 -0.67 13.39 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.07 3.24 7.82 -2.39 -0.02 3.23 16 45 H 0.05 2.06 5.70 -2.39 -0.01 2.05 16 46 H 0.13 3.01 7.48 -2.91 -0.02 2.99 16 47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 49 H 0.07 1.26 7.53 -2.39 -0.02 1.24 16 Total: -1.00 -66.35 381.74 0.06 -66.30 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.07 Total: 25.33 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 4.74 Total: -28.20 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -4.29 Total: -80.87 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -2.17 Total: -32.88 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.71 Total: 50.32 kcal Total: -66.35 0.06 -66.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877606261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.005 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds