Wall clock time and date at job start Tue Mar 31 2020 14:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35995 * 116.99778 * 2 1 4 4 C 1.38371 * 120.16561 * 359.97137 * 3 2 1 5 5 C 1.38840 * 120.35120 * 179.97438 * 4 3 2 6 6 C 1.37756 * 119.97033 * 0.06655 * 5 4 3 7 7 C 1.38737 * 119.87763 * 359.97438 * 6 5 4 8 8 C 1.38353 * 120.41851 * 359.97438 * 7 6 5 9 9 O 1.35999 * 120.14153 * 180.02562 * 8 7 6 10 10 C 1.42891 * 117.00333 * 359.97438 * 9 8 7 11 11 C 1.50650 * 121.79154 * 180.12939 * 6 5 4 12 12 H 1.08991 * 109.26618 * 102.78497 * 11 6 5 13 13 C 1.53004 * 109.24182 * 222.27324 * 11 6 5 14 14 N 1.46628 * 110.50789 * 342.51660 * 11 6 5 15 15 C 1.46896 * 110.99848 * 175.92251 * 14 11 6 16 16 C 1.53005 * 109.47144 * 303.07829 * 15 14 11 17 17 C 1.53001 * 109.46922 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46881 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00261 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99635 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00155 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99549 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47447 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47038 * 120.00103 * 22 20 18 25 25 H 1.48502 * 109.47162 * 239.99739 * 22 20 18 26 26 C 1.47168 * 110.23497 * 52.51576 * 14 11 6 27 27 C 1.50748 * 118.28323 * 179.77442 * 5 4 3 28 28 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47627 * 300.00287 * 1 2 3 30 30 H 1.09004 * 109.47083 * 60.00388 * 1 2 3 31 31 H 1.08001 * 119.80869 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.79113 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47059 * 300.00036 * 10 9 8 34 34 H 1.08996 * 109.47350 * 59.99628 * 10 9 8 35 35 H 1.08996 * 109.47301 * 180.02562 * 10 9 8 36 36 H 1.08994 * 109.47033 * 181.00352 * 13 11 6 37 37 H 1.09003 * 109.46955 * 301.00788 * 13 11 6 38 38 H 1.09009 * 109.46708 * 61.00151 * 13 11 6 39 39 H 1.08996 * 109.47326 * 63.07629 * 15 14 11 40 40 H 1.08997 * 109.47318 * 183.08183 * 15 14 11 41 41 H 1.08996 * 109.47491 * 299.99702 * 16 15 14 42 42 H 1.08997 * 109.47382 * 60.00357 * 16 15 14 43 43 H 1.08996 * 109.47604 * 299.99835 * 17 16 15 44 44 H 1.08997 * 109.47262 * 60.00524 * 17 16 15 45 45 H 0.97003 * 120.00299 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.63500 * 168.96347 * 26 14 11 47 47 H 1.09003 * 109.80069 * 48.45779 * 26 14 11 48 48 H 1.09002 * 109.39164 * 43.23844 * 27 5 4 49 49 H 1.08996 * 109.38692 * 283.44029 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2960 2.3744 -0.0006 5 6 1.9223 3.6135 -0.0001 6 6 3.2978 3.6894 -0.0003 7 6 4.0541 2.5263 -0.0006 8 6 3.4358 1.2887 0.0000 9 8 4.1827 0.1521 0.0002 10 6 5.6030 0.3092 -0.0006 11 6 4.0197 5.0117 0.0031 12 1 4.3922 5.2154 1.0069 13 6 5.1992 4.9447 -0.9692 14 7 3.1160 6.0914 -0.4061 15 6 3.7811 7.3979 -0.3139 16 6 4.2873 7.6128 1.1140 17 6 4.9806 8.9733 1.2099 18 6 5.4797 9.1847 2.6161 19 1 5.3182 8.4249 3.3664 20 6 6.1417 10.3487 2.9449 21 7 6.3379 11.2741 2.0314 22 14 6.7597 10.6110 4.6881 23 1 6.4154 9.4291 5.5185 24 1 8.2339 10.7894 4.6690 25 1 6.1219 11.8229 5.2623 26 6 1.8901 6.0650 0.4076 27 6 1.0597 4.8498 -0.0060 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2175 2.3173 -0.0006 32 1 5.1324 2.5875 -0.0012 33 1 5.9071 0.8593 -0.8911 34 1 5.9081 0.8604 0.8888 35 1 6.0771 -0.6723 -0.0008 36 1 5.7349 5.8938 -0.9563 37 1 5.8732 4.1428 -0.6680 38 1 4.8294 4.7496 -1.9759 39 1 4.6227 7.4269 -1.0059 40 1 3.0725 8.1853 -0.5704 41 1 3.4458 7.5839 1.8061 42 1 4.9960 6.8254 1.3706 43 1 5.8223 9.0019 0.5179 44 1 4.2723 9.7610 0.9532 45 1 6.8040 12.0928 2.2627 46 1 1.3168 6.9760 0.2358 47 1 2.1494 5.9892 1.4636 48 1 0.2353 4.7192 0.6950 49 1 0.6610 5.0080 -1.0080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880089716.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:41 Heat of formation + Delta-G solvation = -73.371663 kcal Electronic energy + Delta-G solvation = -27396.840414 eV Core-core repulsion = 23709.427581 eV Total energy + Delta-G solvation = -3687.412833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 4.44 seconds Orbital eigenvalues (eV) -41.89618 -40.27591 -39.39832 -37.62489 -35.60702 -34.50015 -33.60504 -31.66975 -30.36034 -29.41322 -28.06740 -27.78737 -27.59374 -25.44111 -23.91157 -23.32464 -22.52159 -22.05048 -20.07174 -19.28179 -18.52344 -17.89204 -17.78737 -17.01766 -16.74523 -16.58312 -16.14503 -16.10015 -15.95230 -15.68095 -15.35818 -15.03274 -14.72365 -14.44218 -14.20206 -13.95469 -13.66505 -13.42788 -13.28238 -13.21188 -13.02422 -12.86387 -12.75899 -12.70214 -12.51055 -12.42417 -12.30374 -12.21573 -12.05310 -11.73377 -11.61578 -11.45857 -11.32198 -11.27891 -11.15081 -10.56946 -9.64534 -9.18619 -8.66701 -8.21257 -6.32832 0.27167 0.40966 1.37183 1.37627 1.50575 2.35844 2.37549 2.38648 2.64100 2.94609 3.10998 3.62679 3.69967 3.93065 4.02863 4.13210 4.18795 4.27827 4.30115 4.34846 4.38359 4.39065 4.41179 4.43318 4.49834 4.52634 4.64977 4.66931 4.72122 4.73657 4.76535 4.83806 4.88107 4.92890 4.99889 5.08140 5.15598 5.17635 5.23468 5.27315 5.36472 5.49449 5.56193 5.70500 5.75690 5.83739 6.10320 6.13782 6.16503 6.25599 6.62155 6.83881 7.36395 8.89753 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.002793 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.262734 B =10022.974630 C =10593.003076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.084 3.916 4 C -0.170 4.170 5 C -0.074 4.074 6 C -0.078 4.078 7 C -0.168 4.168 8 C 0.079 3.921 9 O -0.328 6.328 10 C 0.018 3.982 11 C 0.116 3.884 12 H 0.045 0.955 13 C -0.138 4.138 14 N -0.522 5.522 15 C 0.062 3.938 16 C -0.127 4.127 17 C 0.030 3.970 18 C -0.543 4.543 19 H 0.053 0.947 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.961 3.039 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.277 1.277 26 C 0.045 3.955 27 C -0.064 4.064 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.048 0.952 43 H -0.007 1.007 44 H -0.007 1.007 45 H 0.264 0.736 46 H 0.087 0.913 47 H 0.028 0.972 48 H 0.097 0.903 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 -22.769 -6.285 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.038 3.962 4 C -0.188 4.188 5 C -0.074 4.074 6 C -0.078 4.078 7 C -0.187 4.187 8 C 0.033 3.967 9 O -0.242 6.242 10 C -0.077 4.077 11 C 0.008 3.992 12 H 0.062 0.938 13 C -0.195 4.195 14 N -0.245 5.245 15 C -0.066 4.066 16 C -0.166 4.166 17 C -0.007 4.007 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.786 3.214 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.083 4.083 27 C -0.101 4.101 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.046 0.954 48 H 0.116 0.884 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.693 -23.089 -6.827 26.345 hybrid contribution 0.897 1.049 1.694 2.185 sum -9.796 -22.039 -5.133 24.658 Atomic orbital electron populations 1.23340 0.76612 1.05470 1.02243 1.86127 1.23206 1.25907 1.89220 1.18392 0.89364 0.85775 1.02639 1.21204 1.00928 0.89964 1.06713 1.19554 0.92974 0.95100 0.99803 1.19340 0.93288 0.93759 1.01450 1.21100 1.01075 0.90019 1.06537 1.18341 0.88779 0.86286 1.03250 1.86114 1.20300 1.28500 1.89327 1.23314 0.77056 1.05302 1.01986 1.20401 0.92822 0.88197 0.97787 0.93786 1.21863 0.96132 1.02135 0.99358 1.62677 1.05777 1.02614 1.53461 1.22208 0.98796 0.90165 0.95452 1.22004 0.99106 0.97949 0.97509 1.18902 0.94174 0.92463 0.95205 1.21702 1.36412 1.02799 0.97166 0.92865 1.25937 0.96258 0.95794 1.01659 1.70086 1.43037 1.08521 1.35460 0.85458 0.78109 0.78308 0.79543 1.18919 1.20228 1.20222 1.22228 0.91601 0.99605 0.94888 1.20524 0.96555 0.89629 1.03437 0.86478 0.91763 0.91625 0.82331 0.83453 0.91874 0.92266 0.86215 0.92743 0.90873 0.91598 0.90758 0.90716 0.93650 0.93369 0.98831 0.98859 0.92721 0.89500 0.95368 0.88440 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.67 10.29 -79.81 -0.82 -8.49 16 3 C 0.08 2.08 6.70 22.52 0.15 2.23 16 4 C -0.17 -3.63 8.66 22.45 0.19 -3.44 16 5 C -0.07 -1.77 5.77 -19.82 -0.11 -1.89 16 6 C -0.08 -2.06 5.47 -19.87 -0.11 -2.17 16 7 C -0.17 -4.17 8.08 22.42 0.18 -3.99 16 8 C 0.08 2.05 6.69 22.52 0.15 2.20 16 9 O -0.33 -8.17 10.29 -79.85 -0.82 -8.99 16 10 C 0.02 0.29 9.81 113.37 1.11 1.40 16 11 C 0.12 3.32 2.02 44.21 0.09 3.41 16 12 H 0.04 1.44 5.98 -2.39 -0.01 1.43 16 13 C -0.14 -3.55 8.61 71.98 0.62 -2.93 16 14 N -0.52 -15.27 4.65 -875.69 -4.07 -19.34 16 15 C 0.06 2.08 4.98 86.31 0.43 2.51 16 16 C -0.13 -5.20 4.44 30.60 0.14 -5.06 16 17 C 0.03 1.59 4.97 29.85 0.15 1.74 16 18 C -0.54 -31.22 9.11 25.60 0.23 -30.98 16 19 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 20 C 0.00 0.08 5.46 84.66 0.46 0.54 16 21 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 22 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 C 0.04 1.17 4.88 86.21 0.42 1.59 16 27 C -0.06 -1.34 5.94 29.83 0.18 -1.16 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.69 7.67 -2.39 -0.02 0.67 16 30 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.16 2.40 6.29 -2.91 -0.02 2.38 16 32 H 0.15 3.13 4.62 -2.91 -0.01 3.12 16 33 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 34 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.54 6.53 -2.39 -0.02 1.52 16 37 H 0.07 1.59 6.42 -2.39 -0.02 1.57 16 38 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.07 2.53 6.53 -2.39 -0.02 2.52 16 40 H 0.07 2.50 7.97 -2.39 -0.02 2.48 16 41 H 0.04 1.86 6.91 -2.39 -0.02 1.84 16 42 H 0.05 1.98 6.26 -2.39 -0.01 1.97 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.09 2.13 7.91 -2.39 -0.02 2.11 16 47 H 0.03 0.82 7.18 -2.39 -0.02 0.80 16 48 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -70.32 377.11 2.93 -67.39 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.94 Total: 13.92 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 5.40 Total: -34.66 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -3.79 Total: -75.74 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.64 Total: -17.48 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.32 2.93 -67.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880089716.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.982 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.44 seconds