Wall clock time and date at job start Tue Mar 31 2020 14:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36001 * 117.00003 * 2 1 4 4 C 1.38370 * 120.15920 * 0.02562 * 3 2 1 5 5 C 1.38687 * 120.38095 * 179.97438 * 4 3 2 6 6 C 1.37899 * 119.97423 * 0.15976 * 5 4 3 7 7 C 1.38741 * 119.84240 * 359.78134 * 6 5 4 8 8 C 1.38349 * 120.41353 * 0.12909 * 7 6 5 9 9 O 1.36004 * 120.14145 * 180.02562 * 8 7 6 10 10 C 1.42900 * 117.00191 * 359.97438 * 9 8 7 11 11 C 1.50648 * 121.83184 * 179.73643 * 6 5 4 12 12 H 1.09003 * 109.27045 * 257.34114 * 11 6 5 13 13 C 1.52995 * 109.24410 * 137.84385 * 11 6 5 14 14 N 1.46623 * 110.50257 * 17.59842 * 11 6 5 15 15 C 1.46901 * 111.00343 * 184.02526 * 14 11 6 16 16 C 1.53003 * 109.46885 * 64.62264 * 15 14 11 17 17 C 1.53003 * 109.47005 * 177.67103 * 16 15 14 18 18 C 1.50697 * 109.46888 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00283 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00274 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99406 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00485 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47008 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.46765 * 299.99930 * 22 20 18 25 25 H 1.48504 * 109.46963 * 59.99954 * 22 20 18 26 26 C 1.47161 * 110.24884 * 307.44333 * 14 11 6 27 27 C 1.50745 * 118.38892 * 180.42492 * 5 4 3 28 28 H 1.09005 * 109.47238 * 300.00191 * 1 2 3 29 29 H 1.09006 * 109.47147 * 60.00125 * 1 2 3 30 30 H 1.08996 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.81568 * 359.95984 * 4 3 2 32 32 H 1.07998 * 119.79279 * 180.14514 * 7 6 5 33 33 H 1.09004 * 109.47166 * 300.00479 * 10 9 8 34 34 H 1.08996 * 109.46828 * 60.00276 * 10 9 8 35 35 H 1.09000 * 109.47159 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.47559 * 298.99613 * 13 11 6 37 37 H 1.08999 * 109.47011 * 59.00259 * 13 11 6 38 38 H 1.09006 * 109.46948 * 178.99649 * 13 11 6 39 39 H 1.08995 * 109.46884 * 304.62658 * 15 14 11 40 40 H 1.08997 * 109.47198 * 184.62143 * 15 14 11 41 41 H 1.09001 * 109.47133 * 57.66853 * 16 15 14 42 42 H 1.08996 * 109.47458 * 297.67246 * 16 15 14 43 43 H 1.08994 * 109.47507 * 60.00264 * 17 16 15 44 44 H 1.08999 * 109.46695 * 299.99724 * 17 16 15 45 45 H 0.97000 * 120.00545 * 0.02562 * 21 20 18 46 46 H 1.08997 * 109.63497 * 190.98915 * 26 14 11 47 47 H 1.08996 * 109.63151 * 311.58688 * 26 14 11 48 48 H 1.09002 * 109.39236 * 316.85273 * 27 5 4 49 49 H 1.08995 * 109.38645 * 76.55494 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2960 2.3743 0.0005 5 6 1.9209 3.6125 0.0011 6 6 3.2977 3.6894 -0.0023 7 6 4.0542 2.5263 -0.0015 8 6 3.4358 1.2887 -0.0002 9 8 4.1827 0.1521 0.0010 10 6 5.6031 0.3091 0.0003 11 6 4.0197 5.0116 -0.0077 12 1 4.3877 5.2163 -1.0131 13 6 5.2034 4.9438 0.9593 14 7 3.1178 6.0909 0.4064 15 6 3.7827 7.3975 0.3136 16 6 4.1127 7.6989 -1.1497 17 6 4.7527 9.0848 -1.2530 18 6 5.0772 9.3820 -2.6944 19 1 4.8500 8.6549 -3.4601 20 6 5.6650 10.5816 -3.0356 21 7 5.9420 11.4667 -2.1032 22 14 6.0678 10.9497 -4.8221 23 1 6.6888 12.2948 -4.9224 24 1 7.0139 9.9275 -5.3369 25 1 4.8203 10.9197 -5.6272 26 6 1.8887 6.0661 -0.4025 27 6 1.0599 4.8498 0.0115 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2176 2.3173 0.0003 32 1 5.1324 2.5874 -0.0018 33 1 5.9074 0.8587 -0.8905 34 1 5.9080 0.8609 0.8894 35 1 6.0771 -0.6724 0.0009 36 1 4.8383 4.7479 1.9674 37 1 5.8762 4.1423 0.6543 38 1 5.7391 5.8930 0.9449 39 1 4.7031 7.3789 0.8972 40 1 3.1207 8.1706 0.7035 41 1 3.1971 7.6765 -1.7407 42 1 4.8074 6.9488 -1.5275 43 1 5.6683 9.1073 -0.6621 44 1 4.0579 9.8349 -0.8753 45 1 5.7332 11.2755 -1.1754 46 1 1.3159 6.9766 -0.2265 47 1 2.1469 5.9908 -1.4587 48 1 0.2328 4.7211 -0.6867 49 1 0.6637 5.0064 1.0147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880089717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:48 Heat of formation + Delta-G solvation = -58.187556 kcal Electronic energy + Delta-G solvation = -27400.177911 eV Core-core repulsion = 23713.423511 eV Total energy + Delta-G solvation = -3686.754400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99671 -39.27190 -38.59227 -36.57898 -34.02793 -33.54688 -32.06499 -30.25123 -29.41573 -28.37535 -27.43751 -26.73754 -25.86570 -23.81879 -22.94213 -21.99606 -21.47629 -20.91542 -18.97446 -18.44134 -17.10371 -16.95226 -16.65646 -16.23053 -15.64318 -15.42199 -15.17469 -14.98492 -14.64557 -14.41058 -14.15487 -13.75032 -13.51702 -13.36917 -13.12060 -12.82679 -12.55492 -12.45014 -12.35525 -11.97165 -11.92385 -11.76901 -11.51915 -11.44389 -11.37183 -11.20397 -11.14523 -10.79557 -10.61938 -10.48691 -10.48637 -10.14142 -9.78106 -9.73526 -8.79856 -8.64740 -8.33329 -7.96017 -7.74638 -6.36413 -4.05725 1.15929 1.33290 3.09393 3.12676 3.42535 3.44321 3.55111 3.63207 4.04116 4.53744 4.54910 4.58635 4.76870 4.84593 4.90616 4.92631 4.99385 5.02963 5.12785 5.22199 5.28724 5.31129 5.33230 5.37144 5.39477 5.40900 5.50034 5.59123 5.70065 5.75559 5.81754 5.87122 5.92123 5.99663 6.08793 6.14908 6.23028 6.29749 6.43739 6.46407 6.62391 6.69777 6.88305 6.89168 7.23681 7.32598 7.38334 7.44521 7.52393 8.21551 8.45554 8.88450 9.66498 11.03978 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.002749 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.218052 B =10182.979454 C =10640.687652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.095 3.905 4 C -0.174 4.174 5 C -0.063 4.063 6 C -0.060 4.060 7 C -0.168 4.168 8 C 0.095 3.905 9 O -0.309 6.309 10 C 0.026 3.974 11 C 0.116 3.884 12 H 0.062 0.938 13 C -0.142 4.142 14 N -0.527 5.527 15 C 0.048 3.952 16 C -0.138 4.138 17 C 0.013 3.987 18 C -0.602 4.602 19 H 0.046 0.954 20 C 0.014 3.986 21 N -0.913 5.913 22 Si 1.067 2.933 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.050 3.950 27 C -0.072 4.072 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.006 0.994 44 H 0.007 0.993 45 H 0.269 0.731 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 -22.567 6.853 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.050 3.950 4 C -0.193 4.193 5 C -0.063 4.063 6 C -0.061 4.061 7 C -0.187 4.187 8 C 0.050 3.950 9 O -0.223 6.223 10 C -0.069 4.069 11 C 0.008 3.992 12 H 0.080 0.920 13 C -0.199 4.199 14 N -0.250 5.250 15 C -0.079 4.079 16 C -0.177 4.177 17 C -0.025 4.025 18 C -0.640 4.640 19 H 0.064 0.936 20 C -0.189 4.189 21 N -0.550 5.550 22 Si 0.896 3.104 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.078 4.078 27 C -0.109 4.109 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.025 0.975 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.101 -21.893 6.361 24.195 hybrid contribution -0.458 -0.771 0.107 0.903 sum -8.559 -22.665 6.468 25.075 Atomic orbital electron populations 1.23034 0.78825 1.03731 1.01213 1.86154 1.20809 1.26021 1.89297 1.18118 0.89076 0.85042 1.02782 1.20956 0.99716 0.90911 1.07703 1.19313 0.93037 0.94125 0.99863 1.19337 0.92612 0.94087 1.00028 1.21013 1.00457 0.90364 1.06854 1.18087 0.88133 0.85974 1.02826 1.86147 1.18495 1.28339 1.89288 1.23058 0.78802 1.03690 1.01386 1.20396 0.92433 0.87955 0.98429 0.92028 1.21904 0.96309 1.02097 0.99586 1.62603 1.05361 1.03585 1.53458 1.22437 0.99009 0.88894 0.97582 1.22110 1.00269 1.00367 0.94955 1.19133 0.94824 0.91026 0.97517 1.22061 1.44394 1.04691 0.92893 0.93593 1.25843 0.94119 0.92876 1.06109 1.70782 1.45377 1.36488 1.02308 0.83568 0.76443 0.76227 0.74202 1.20716 1.21485 1.21477 1.22121 0.91724 0.98026 0.95955 1.20526 0.96682 0.91375 1.02345 0.92789 0.92793 0.88394 0.84932 0.84547 0.92672 0.92696 0.88321 0.91783 0.92497 0.91563 0.90696 0.90853 0.93053 0.93245 0.97563 0.97523 0.92107 0.90098 0.93786 0.90714 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.78 10.29 -34.06 -0.35 -4.13 16 3 C 0.09 1.23 6.70 -39.19 -0.26 0.97 16 4 C -0.17 -2.03 8.66 -39.37 -0.34 -2.38 16 5 C -0.06 -0.81 5.77 -104.56 -0.60 -1.41 16 6 C -0.06 -0.81 5.48 -104.59 -0.57 -1.39 16 7 C -0.17 -2.11 8.08 -39.35 -0.32 -2.43 16 8 C 0.10 1.26 6.69 -39.20 -0.26 1.00 16 9 O -0.31 -3.91 10.29 -34.06 -0.35 -4.26 16 10 C 0.03 0.22 9.81 101.05 0.99 1.21 16 11 C 0.12 1.66 2.16 -69.04 -0.15 1.51 16 12 H 0.06 0.99 6.26 -51.93 -0.32 0.66 16 13 C -0.14 -1.81 8.61 37.15 0.32 -1.49 16 14 N -0.53 -7.84 4.65 -228.14 -1.06 -8.90 16 15 C 0.05 0.81 5.11 -3.82 -0.02 0.79 16 16 C -0.14 -2.81 4.47 -26.73 -0.12 -2.93 16 17 C 0.01 0.32 4.28 -27.88 -0.12 0.20 16 18 C -0.60 -17.34 9.11 -34.44 -0.31 -17.65 16 19 H 0.05 1.31 7.74 -52.48 -0.41 0.90 16 20 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 21 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 22 Si 1.07 25.54 29.90 -169.99 -5.08 20.45 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.05 0.69 4.62 -3.74 -0.02 0.67 16 27 C -0.07 -0.83 5.94 -27.92 -0.17 -1.00 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.13 1.21 6.29 -52.49 -0.33 0.88 16 32 H 0.14 1.47 4.61 -52.49 -0.24 1.23 16 33 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.62 6.41 -51.93 -0.33 0.29 16 38 H 0.07 0.90 6.37 -51.93 -0.33 0.57 16 39 H 0.07 1.24 6.16 -51.93 -0.32 0.92 16 40 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 41 H 0.05 1.05 6.60 -51.93 -0.34 0.71 16 42 H 0.05 1.02 6.53 -51.93 -0.34 0.68 16 43 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 44 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 45 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 46 H 0.08 1.07 8.02 -51.93 -0.42 0.66 16 47 H 0.04 0.66 7.04 -51.93 -0.37 0.30 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -33.33 375.63 -9.29 -42.62 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.80 Total: -1.20 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.06 Total: -22.81 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.30 Total: -36.33 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.70 Total: -8.39 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.33 -9.29 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880089717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.567 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds