Wall clock time and date at job start Tue Mar 31 2020 14:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36001 * 117.00003 * 2 1 4 4 C 1.38370 * 120.15920 * 0.02562 * 3 2 1 5 5 C 1.38687 * 120.38095 * 179.97438 * 4 3 2 6 6 C 1.37899 * 119.97423 * 0.15976 * 5 4 3 7 7 C 1.38741 * 119.84240 * 359.78134 * 6 5 4 8 8 C 1.38349 * 120.41353 * 0.12909 * 7 6 5 9 9 O 1.36004 * 120.14145 * 180.02562 * 8 7 6 10 10 C 1.42900 * 117.00191 * 359.97438 * 9 8 7 11 11 C 1.50648 * 121.83184 * 179.73643 * 6 5 4 12 12 H 1.09003 * 109.27045 * 257.34114 * 11 6 5 13 13 C 1.52995 * 109.24410 * 137.84385 * 11 6 5 14 14 N 1.46623 * 110.50257 * 17.59842 * 11 6 5 15 15 C 1.46901 * 111.00343 * 184.02526 * 14 11 6 16 16 C 1.53003 * 109.46885 * 64.62264 * 15 14 11 17 17 C 1.53003 * 109.47005 * 177.67103 * 16 15 14 18 18 C 1.50697 * 109.46888 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00283 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00274 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99406 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00485 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47008 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.46765 * 299.99930 * 22 20 18 25 25 H 1.48504 * 109.46963 * 59.99954 * 22 20 18 26 26 C 1.47161 * 110.24884 * 307.44333 * 14 11 6 27 27 C 1.50745 * 118.38892 * 180.42492 * 5 4 3 28 28 H 1.09005 * 109.47238 * 300.00191 * 1 2 3 29 29 H 1.09006 * 109.47147 * 60.00125 * 1 2 3 30 30 H 1.08996 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.81568 * 359.95984 * 4 3 2 32 32 H 1.07998 * 119.79279 * 180.14514 * 7 6 5 33 33 H 1.09004 * 109.47166 * 300.00479 * 10 9 8 34 34 H 1.08996 * 109.46828 * 60.00276 * 10 9 8 35 35 H 1.09000 * 109.47159 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.47559 * 298.99613 * 13 11 6 37 37 H 1.08999 * 109.47011 * 59.00259 * 13 11 6 38 38 H 1.09006 * 109.46948 * 178.99649 * 13 11 6 39 39 H 1.08995 * 109.46884 * 304.62658 * 15 14 11 40 40 H 1.08997 * 109.47198 * 184.62143 * 15 14 11 41 41 H 1.09001 * 109.47133 * 57.66853 * 16 15 14 42 42 H 1.08996 * 109.47458 * 297.67246 * 16 15 14 43 43 H 1.08994 * 109.47507 * 60.00264 * 17 16 15 44 44 H 1.08999 * 109.46695 * 299.99724 * 17 16 15 45 45 H 0.97000 * 120.00545 * 0.02562 * 21 20 18 46 46 H 1.08997 * 109.63497 * 190.98915 * 26 14 11 47 47 H 1.08996 * 109.63151 * 311.58688 * 26 14 11 48 48 H 1.09002 * 109.39236 * 316.85273 * 27 5 4 49 49 H 1.08995 * 109.38645 * 76.55494 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2960 2.3743 0.0005 5 6 1.9209 3.6125 0.0011 6 6 3.2977 3.6894 -0.0023 7 6 4.0542 2.5263 -0.0015 8 6 3.4358 1.2887 -0.0002 9 8 4.1827 0.1521 0.0010 10 6 5.6031 0.3091 0.0003 11 6 4.0197 5.0116 -0.0077 12 1 4.3877 5.2163 -1.0131 13 6 5.2034 4.9438 0.9593 14 7 3.1178 6.0909 0.4064 15 6 3.7827 7.3975 0.3136 16 6 4.1127 7.6989 -1.1497 17 6 4.7527 9.0848 -1.2530 18 6 5.0772 9.3820 -2.6944 19 1 4.8500 8.6549 -3.4601 20 6 5.6650 10.5816 -3.0356 21 7 5.9420 11.4667 -2.1032 22 14 6.0678 10.9497 -4.8221 23 1 6.6888 12.2948 -4.9224 24 1 7.0139 9.9275 -5.3369 25 1 4.8203 10.9197 -5.6272 26 6 1.8887 6.0661 -0.4025 27 6 1.0599 4.8498 0.0115 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2176 2.3173 0.0003 32 1 5.1324 2.5874 -0.0018 33 1 5.9074 0.8587 -0.8905 34 1 5.9080 0.8609 0.8894 35 1 6.0771 -0.6724 0.0009 36 1 4.8383 4.7479 1.9674 37 1 5.8762 4.1423 0.6543 38 1 5.7391 5.8930 0.9449 39 1 4.7031 7.3789 0.8972 40 1 3.1207 8.1706 0.7035 41 1 3.1971 7.6765 -1.7407 42 1 4.8074 6.9488 -1.5275 43 1 5.6683 9.1073 -0.6621 44 1 4.0579 9.8349 -0.8753 45 1 5.7332 11.2755 -1.1754 46 1 1.3159 6.9766 -0.2265 47 1 2.1469 5.9908 -1.4587 48 1 0.2328 4.7211 -0.6867 49 1 0.6637 5.0064 1.0147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880089717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:47 Heat of formation + Delta-G solvation = -78.308779 kcal Electronic energy + Delta-G solvation = -27401.050433 eV Core-core repulsion = 23713.423511 eV Total energy + Delta-G solvation = -3687.626922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93282 -40.32688 -39.42130 -37.71176 -35.95091 -34.55025 -33.62929 -31.58615 -30.40785 -29.37711 -28.08361 -27.65297 -27.49410 -25.41396 -24.00149 -23.52949 -22.55657 -22.19901 -20.13062 -19.32291 -18.97936 -17.96865 -17.81096 -17.04146 -16.78149 -16.25320 -16.14762 -16.08538 -15.77956 -15.66651 -15.41708 -15.26301 -15.07937 -14.72062 -14.18619 -13.90361 -13.68353 -13.51446 -13.36703 -13.23480 -13.06771 -13.01051 -12.75420 -12.66658 -12.54163 -12.34768 -12.26848 -12.07556 -12.00987 -11.79754 -11.78553 -11.55269 -11.44769 -11.23507 -10.80418 -10.56455 -9.68726 -9.26737 -8.70845 -8.68826 -6.41840 0.24051 0.37174 1.49525 1.57729 1.77509 2.33331 2.35113 2.54021 2.60454 2.86934 3.13167 3.56809 3.65505 3.88765 3.96778 4.04012 4.13323 4.20271 4.24141 4.29252 4.30865 4.34987 4.37188 4.41491 4.43749 4.47006 4.53151 4.60890 4.66244 4.71058 4.74631 4.77621 4.80727 4.82715 4.91725 4.97909 5.03349 5.06166 5.16198 5.19575 5.27643 5.40434 5.46400 5.51304 5.71177 5.96449 6.05079 6.08420 6.10886 6.16392 6.56507 6.59512 7.39756 8.69776 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.002749 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.218052 B =10182.979454 C =10640.687652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.085 3.915 4 C -0.169 4.169 5 C -0.074 4.074 6 C -0.079 4.079 7 C -0.168 4.168 8 C 0.079 3.921 9 O -0.328 6.328 10 C 0.018 3.982 11 C 0.117 3.883 12 H 0.040 0.960 13 C -0.138 4.138 14 N -0.521 5.521 15 C 0.060 3.940 16 C -0.120 4.120 17 C 0.014 3.986 18 C -0.621 4.621 19 H 0.044 0.956 20 C -0.038 4.038 21 N -0.936 5.936 22 Si 1.115 2.885 23 H -0.281 1.281 24 H -0.270 1.270 25 H -0.269 1.269 26 C 0.045 3.955 27 C -0.065 4.065 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.043 0.957 43 H -0.010 1.010 44 H -0.009 1.009 45 H 0.256 0.744 46 H 0.085 0.915 47 H 0.028 0.972 48 H 0.097 0.903 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 -24.084 6.469 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.039 3.961 4 C -0.188 4.188 5 C -0.074 4.074 6 C -0.079 4.079 7 C -0.187 4.187 8 C 0.034 3.966 9 O -0.242 6.242 10 C -0.077 4.077 11 C 0.009 3.991 12 H 0.058 0.942 13 C -0.195 4.195 14 N -0.244 5.244 15 C -0.068 4.068 16 C -0.159 4.159 17 C -0.023 4.023 18 C -0.659 4.659 19 H 0.063 0.937 20 C -0.236 4.236 21 N -0.574 5.574 22 Si 0.936 3.064 23 H -0.206 1.206 24 H -0.195 1.195 25 H -0.194 1.194 26 C -0.082 4.082 27 C -0.102 4.102 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.009 0.991 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.046 0.954 48 H 0.116 0.884 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.137 -23.442 5.996 25.864 hybrid contribution -0.169 -0.394 0.249 0.496 sum -9.306 -23.836 6.246 26.339 Atomic orbital electron populations 1.23347 0.76585 1.05506 1.02243 1.86130 1.23223 1.25866 1.89187 1.18388 0.89378 0.85768 1.02537 1.21158 1.00966 0.89954 1.06699 1.19536 0.92964 0.95079 0.99841 1.19354 0.93268 0.93694 1.01633 1.21097 1.01081 0.89981 1.06497 1.18332 0.88773 0.86295 1.03200 1.86121 1.20325 1.28453 1.89307 1.23322 0.77024 1.05342 1.01985 1.20377 0.92886 0.88296 0.97551 0.94205 1.21883 0.96030 1.02158 0.99454 1.62666 1.05646 1.02524 1.53581 1.22243 0.99420 0.90279 0.94835 1.21899 0.99358 0.96997 0.97673 1.19070 0.94030 0.93558 0.95690 1.22502 1.44193 1.04831 0.94391 0.93718 1.27422 0.93508 0.92868 1.09789 1.70915 1.46984 1.37352 1.02127 0.82964 0.77429 0.76486 0.69501 1.20640 1.19500 1.19448 1.22219 0.91547 0.99590 0.94889 1.20519 0.96580 0.89585 1.03478 0.91618 0.91770 0.86432 0.82326 0.83376 0.92260 0.91844 0.86183 0.91469 0.90696 0.92718 0.90535 0.90689 0.93339 0.93781 0.99198 0.99114 0.93431 0.89675 0.95405 0.88442 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.59 10.29 -79.88 -0.82 -8.41 16 3 C 0.08 2.09 6.70 22.52 0.15 2.24 16 4 C -0.17 -3.61 8.66 22.41 0.19 -3.42 16 5 C -0.07 -1.77 5.77 -19.82 -0.11 -1.88 16 6 C -0.08 -2.08 5.48 -19.84 -0.11 -2.18 16 7 C -0.17 -4.09 8.08 22.42 0.18 -3.91 16 8 C 0.08 2.04 6.69 22.52 0.15 2.19 16 9 O -0.33 -8.03 10.29 -79.91 -0.82 -8.85 16 10 C 0.02 0.28 9.81 113.37 1.11 1.39 16 11 C 0.12 3.32 2.16 44.20 0.10 3.41 16 12 H 0.04 1.30 6.26 -2.39 -0.01 1.29 16 13 C -0.14 -3.45 8.61 71.98 0.62 -2.83 16 14 N -0.52 -15.24 4.65 -875.71 -4.07 -19.31 16 15 C 0.06 2.03 5.11 86.30 0.44 2.47 16 16 C -0.12 -4.98 4.47 30.60 0.14 -4.84 16 17 C 0.01 0.74 4.28 29.85 0.13 0.87 16 18 C -0.62 -36.24 9.11 25.60 0.23 -36.01 16 19 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 20 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 21 N -0.94 -58.74 13.65 21.45 0.29 -58.45 16 22 Si 1.12 50.87 29.90 68.60 2.05 52.92 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 26 C 0.05 1.21 4.62 86.22 0.40 1.61 16 27 C -0.06 -1.36 5.94 29.83 0.18 -1.18 16 28 H 0.07 0.68 7.66 -2.38 -0.02 0.67 16 29 H 0.06 0.69 7.67 -2.38 -0.02 0.67 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.16 2.40 6.29 -2.91 -0.02 2.38 16 32 H 0.15 3.06 4.61 -2.91 -0.01 3.05 16 33 H 0.06 0.87 7.66 -2.38 -0.02 0.85 16 34 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.56 6.41 -2.39 -0.02 1.55 16 38 H 0.05 1.48 6.37 -2.38 -0.02 1.46 16 39 H 0.08 2.56 6.16 -2.39 -0.01 2.55 16 40 H 0.07 2.51 8.13 -2.39 -0.02 2.49 16 41 H 0.05 2.01 6.60 -2.39 -0.02 2.00 16 42 H 0.04 1.86 6.53 -2.39 -0.02 1.84 16 43 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 44 H -0.01 -0.52 8.01 -2.39 -0.02 -0.54 16 45 H 0.26 16.21 7.22 -92.71 -0.67 15.54 16 46 H 0.08 2.17 8.02 -2.39 -0.02 2.15 16 47 H 0.03 0.83 7.04 -2.39 -0.02 0.81 16 48 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -72.35 375.63 3.04 -69.31 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.04 Total: 15.34 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 5.37 Total: -42.55 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.78 Total: -77.76 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -1.64 Total: -17.26 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Total: -72.35 3.04 -69.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880089717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.995 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds