Wall clock time and date at job start Tue Mar 31 2020 12:30:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50698 * 119.99476 * 2 1
4 4 N 1.46904 * 109.47195 * 124.99642 * 3 2 1
5 5 C 1.46901 * 111.00013 * 158.82819 * 4 3 2
6 6 C 1.52996 * 109.46989 * 200.16735 * 5 4 3
7 7 H 1.09004 * 109.47646 * 296.77159 * 6 5 4
8 8 O 1.42898 * 109.47435 * 56.77405 * 6 5 4
9 9 C 1.52998 * 109.47030 * 176.77030 * 6 5 4
10 10 O 1.42905 * 109.47431 * 175.00054 * 9 6 5
11 11 C 1.35677 * 117.00294 * 180.02562 * 10 9 6
12 12 C 1.39308 * 119.81600 * 359.72016 * 11 10 9
13 13 C 1.36439 * 120.18569 * 179.75866 * 12 11 10
14 14 C 1.40835 * 119.80593 * 0.52071 * 13 12 11
15 15 C 1.41221 * 120.17551 * 179.71325 * 14 13 12
16 16 H 1.07995 * 120.00007 * 28.97387 * 15 14 13
17 17 C 1.39887 * 119.99769 * 208.97042 * 15 14 13
18 18 N 1.30881 * 120.00326 * 10.38842 * 17 15 14
19 19 Si 1.86802 * 119.99580 * 190.38559 * 17 15 14
20 20 H 1.48499 * 109.47129 * 60.00635 * 19 17 15
21 21 H 1.48506 * 109.47143 * 180.02562 * 19 17 15
22 22 H 1.48500 * 109.47318 * 300.00075 * 19 17 15
23 23 C 1.40829 * 119.64629 * 359.73662 * 14 13 12
24 24 C 1.36448 * 119.80871 * 0.02562 * 23 14 13
25 25 C 1.46899 * 111.00300 * 282.78780 * 4 3 2
26 26 C 1.53000 * 109.46644 * 311.74178 * 25 4 3
27 27 C 1.53002 * 109.46845 * 71.73743 * 25 4 3
28 28 H 1.07999 * 120.00313 * 0.02562 * 1 2 3
29 29 H 1.08005 * 119.99474 * 180.02562 * 1 2 3
30 30 H 1.07999 * 120.00313 * 179.97438 * 2 1 3
31 31 H 1.09001 * 109.47546 * 4.99942 * 3 2 1
32 32 H 1.09004 * 109.47315 * 244.99441 * 3 2 1
33 33 H 1.09000 * 109.47262 * 320.17143 * 5 4 3
34 34 H 1.09004 * 109.46944 * 80.17003 * 5 4 3
35 35 H 0.96700 * 114.00322 * 59.99328 * 8 6 5
36 36 H 1.09005 * 109.47477 * 295.00009 * 9 6 5
37 37 H 1.09004 * 109.47203 * 55.00078 * 9 6 5
38 38 H 1.08008 * 119.91088 * 0.02954 * 12 11 10
39 39 H 1.07998 * 120.09665 * 180.25586 * 13 12 11
40 40 H 0.97002 * 119.99611 * 180.02562 * 18 17 15
41 41 H 1.07997 * 120.09569 * 179.97438 * 23 14 13
42 42 H 1.07998 * 119.90351 * 179.97438 * 24 23 14
43 43 H 1.08999 * 109.47304 * 191.73703 * 25 4 3
44 44 H 1.09003 * 109.46814 * 190.71213 * 26 25 4
45 45 H 1.09000 * 109.47189 * 310.69840 * 26 25 4
46 46 H 1.08994 * 109.47393 * 70.71112 * 26 25 4
47 47 H 1.08999 * 109.47086 * 292.05375 * 27 25 4
48 48 H 1.08998 * 109.47054 * 52.05832 * 27 25 4
49 49 H 1.09006 * 109.46640 * 172.05998 * 27 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 7 2.9961 1.3322 1.1346
5 6 4.0728 2.3055 0.9079
6 6 5.2607 1.9719 1.8126
7 1 4.9615 2.0701 2.8562
8 8 5.6874 0.6310 1.5636
9 6 6.4118 2.9361 1.5193
10 8 7.4772 2.7009 2.4421
11 6 8.5823 3.4783 2.3184
12 6 8.6391 4.4474 1.3193
13 6 9.7446 5.2366 1.1911
14 6 10.8347 5.0618 2.0655
15 6 11.9853 5.8703 1.9360
16 1 11.9000 6.8716 1.5405
17 6 13.2356 5.3742 2.3202
18 7 13.3763 4.1047 2.6058
19 14 14.7043 6.5237 2.4255
20 1 14.4242 7.5953 3.4147
21 1 15.9030 5.7575 2.8513
22 1 14.9534 7.1319 1.0939
23 6 10.7714 4.0762 3.0694
24 6 9.6564 3.2986 3.1871
25 6 2.2888 1.6127 2.3911
26 6 1.3644 2.8165 2.1981
27 6 1.4589 0.3916 2.7927
28 1 -0.5400 0.9353 -0.0004
29 1 -0.5399 -0.9354 0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3584 2.1317 0.0896
32 1 2.6213 1.4027 -0.9314
33 1 4.3872 2.2632 -0.1349
34 1 3.7111 3.3076 1.1380
35 1 5.9688 0.4705 0.6525
36 1 6.7699 2.7757 0.5023
37 1 6.0611 3.9629 1.6233
38 1 7.8038 4.5774 0.6469
39 1 9.7854 5.9903 0.4187
40 1 14.2432 3.7609 2.8726
41 1 11.6033 3.9356 3.7436
42 1 9.6063 2.5419 3.9561
43 1 3.0137 1.8330 3.1748
44 1 0.9861 3.1430 3.1669
45 1 1.9201 3.6303 1.7322
46 1 0.5287 2.5339 1.5582
47 1 0.6447 0.2557 2.0810
48 1 2.0933 -0.4948 2.7928
49 1 1.0475 0.5442 3.7906
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000917071586.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:00
Heat of formation + Delta-G solvation = -40.598236 kcal
Electronic energy + Delta-G solvation = -26449.641347 eV
Core-core repulsion = 22763.649677 eV
Total energy + Delta-G solvation = -3685.991670 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-39.68324 -38.77583 -37.07329 -35.90961 -33.89293 -33.26234 -32.26231 -30.36358
-29.50063 -28.91654 -27.47078 -26.55200 -24.83473 -24.04895 -22.29836 -20.83845
-20.55731 -20.32267 -19.46334 -17.34251 -17.22079 -16.72830 -16.25754 -15.99656
-15.64634 -15.21074 -14.90570 -14.40366 -14.31647 -14.05775 -13.93127 -13.67198
-13.32955 -13.16737 -12.79602 -12.57546 -12.35719 -12.23493 -12.15886 -12.00762
-11.78250 -11.67142 -11.52221 -11.32410 -11.24333 -11.12374 -11.01338 -10.94885
-10.74557 -10.58153 -9.94826 -9.86378 -9.80831 -9.35540 -9.30097 -9.06776
-8.48238 -7.63915 -6.95853 -6.65116 -4.26587 1.95166 2.80336 2.95111
3.09519 3.12218 3.21997 3.46106 3.97829 4.08450 4.50521 4.59706
4.66880 4.67662 4.71692 4.90268 4.94791 5.03264 5.09477 5.14787
5.22731 5.26953 5.34634 5.40231 5.41907 5.57177 5.60818 5.61821
5.67034 5.68865 5.74957 5.97845 6.05329 6.05871 6.14671 6.22906
6.33673 6.38789 6.72834 6.82465 6.90135 6.98163 7.12434 7.21122
7.47665 7.57331 7.78538 7.83342 8.02208 8.22596 8.46358 8.66847
8.92759 8.99628 10.29639
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.038453 B = 0.002012 C = 0.001998
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 727.994260 B =13910.177756 C =14010.404302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.122 4.122
3 C 0.068 3.932
4 N -0.515 5.515
5 C 0.022 3.978
6 C 0.120 3.880
7 H 0.101 0.899
8 O -0.537 6.537
9 C 0.038 3.962
10 O -0.317 6.317
11 C -0.002 4.002
12 C -0.173 4.173
13 C -0.193 4.193
14 C 0.086 3.914
15 C -0.465 4.465
16 H 0.074 0.926
17 C 0.072 3.928
18 N -0.808 5.808
19 Si 0.911 3.089
20 H -0.265 1.265
21 H -0.279 1.279
22 H -0.267 1.267
23 C -0.125 4.125
24 C -0.123 4.123
25 C 0.076 3.924
26 C -0.187 4.187
27 C -0.154 4.154
28 H 0.092 0.908
29 H 0.098 0.902
30 H 0.114 0.886
31 H 0.051 0.949
32 H 0.079 0.921
33 H 0.079 0.921
34 H 0.050 0.950
35 H 0.369 0.631
36 H 0.053 0.947
37 H 0.055 0.945
38 H 0.092 0.908
39 H 0.094 0.906
40 H 0.279 0.721
41 H 0.128 0.872
42 H 0.098 0.902
43 H 0.082 0.918
44 H 0.062 0.938
45 H 0.055 0.945
46 H 0.060 0.940
47 H 0.068 0.932
48 H 0.064 0.936
49 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.626 -5.103 -3.716 22.528
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C -0.141 4.141
3 C -0.059 4.059
4 N -0.238 5.238
5 C -0.106 4.106
6 C 0.059 3.941
7 H 0.119 0.881
8 O -0.340 6.340
9 C -0.040 4.040
10 O -0.232 6.232
11 C -0.045 4.045
12 C -0.192 4.192
13 C -0.213 4.213
14 C 0.083 3.917
15 C -0.495 4.495
16 H 0.092 0.908
17 C -0.144 4.144
18 N -0.436 5.436
19 Si 0.736 3.264
20 H -0.190 1.190
21 H -0.204 1.204
22 H -0.192 1.192
23 C -0.144 4.144
24 C -0.142 4.142
25 C -0.032 4.032
26 C -0.246 4.246
27 C -0.211 4.211
28 H 0.110 0.890
29 H 0.116 0.884
30 H 0.132 0.868
31 H 0.069 0.931
32 H 0.097 0.903
33 H 0.097 0.903
34 H 0.068 0.932
35 H 0.215 0.785
36 H 0.071 0.929
37 H 0.073 0.927
38 H 0.110 0.890
39 H 0.113 0.887
40 H 0.090 0.910
41 H 0.146 0.854
42 H 0.116 0.884
43 H 0.100 0.900
44 H 0.081 0.919
45 H 0.074 0.926
46 H 0.078 0.922
47 H 0.087 0.913
48 H 0.083 0.917
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -21.383 -5.950 -2.838 22.376
hybrid contribution 0.476 1.626 -0.935 1.935
sum -20.907 -4.324 -3.772 21.680
Atomic orbital electron populations
1.23761 0.95918 1.01685 1.02987 1.22880 0.95344 0.98722 0.97107
1.21429 0.95094 0.95357 0.94037 1.62026 1.10829 1.49085 1.01900
1.22793 0.92763 0.94485 1.00604 1.21808 0.89874 0.82364 1.00007
0.88097 1.86634 1.86500 1.27308 1.33606 1.23138 0.88452 0.98836
0.93543 1.85898 1.24413 1.58593 1.54314 1.18665 0.88044 0.96693
1.01118 1.20398 0.99293 0.99709 0.99759 1.20613 0.96033 1.03148
1.01501 1.17611 0.91993 0.92317 0.89743 1.19402 0.91198 1.00785
1.38151 0.90754 1.25854 1.00517 0.95168 0.92848 1.69785 1.25860
1.13173 1.34741 0.86330 0.79785 0.80702 0.79590 1.19014 1.20416
1.19201 1.21057 0.96197 0.97982 0.99213 1.19880 0.92830 1.01785
0.99702 1.21741 0.95112 0.94344 0.92049 1.22488 1.00622 0.98999
1.02443 1.22121 1.00210 0.97857 1.00907 0.88982 0.88398 0.86819
0.93148 0.90283 0.90289 0.93211 0.78485 0.92927 0.92683 0.88963
0.88746 0.90980 0.85396 0.88371 0.89996 0.91934 0.92635 0.92153
0.91321 0.91686 0.92950
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -1.36 12.49 29.01 0.36 -0.99 16
2 C -0.12 -0.93 7.53 -36.03 -0.27 -1.20 16
3 C 0.07 0.54 5.18 -4.97 -0.03 0.51 16
4 N -0.52 -4.83 4.15 -228.08 -0.95 -5.78 16
5 C 0.02 0.21 4.57 -3.83 -0.02 0.19 16
6 C 0.12 1.52 3.29 -26.73 -0.09 1.43 16
7 H 0.10 1.38 6.87 -51.93 -0.36 1.02 16
8 O -0.54 -7.55 13.10 -40.09 -0.53 -8.08 16
9 C 0.04 0.57 4.36 37.16 0.16 0.74 16
10 O -0.32 -6.54 10.09 -23.59 -0.24 -6.78 16
11 C 0.00 -0.05 6.71 -38.79 -0.26 -0.31 16
12 C -0.17 -3.90 8.96 -39.83 -0.36 -4.26 16
13 C -0.19 -4.76 9.74 -39.25 -0.38 -5.14 16
14 C 0.09 2.30 5.55 -106.80 -0.59 1.71 16
15 C -0.46 -12.42 9.05 -37.83 -0.34 -12.76 16
16 H 0.07 1.90 7.87 -52.49 -0.41 1.49 16
17 C 0.07 1.82 5.26 -17.34 -0.09 1.73 16
18 N -0.81 -21.23 10.83 55.54 0.60 -20.63 16
19 Si 0.91 18.95 29.57 -169.99 -5.03 13.93 16
20 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16
21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16
22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
23 C -0.13 -3.30 8.60 -39.25 -0.34 -3.64 16
24 C -0.12 -3.03 9.92 -39.83 -0.40 -3.42 16
25 C 0.08 0.69 2.79 -67.71 -0.19 0.50 16
26 C -0.19 -1.46 8.08 37.16 0.30 -1.16 16
27 C -0.15 -1.33 8.37 37.16 0.31 -1.02 16
28 H 0.09 0.56 7.84 -52.49 -0.41 0.15 16
29 H 0.10 0.57 8.06 -52.48 -0.42 0.15 16
30 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16
31 H 0.05 0.38 5.09 -51.93 -0.26 0.12 16
32 H 0.08 0.59 7.56 -51.93 -0.39 0.20 16
33 H 0.08 0.68 7.57 -51.93 -0.39 0.29 16
34 H 0.05 0.45 6.45 -51.93 -0.33 0.12 16
35 H 0.37 4.06 9.05 45.56 0.41 4.47 16
36 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16
37 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16
38 H 0.09 1.78 6.27 -52.48 -0.33 1.45 16
39 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16
40 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16
41 H 0.13 3.46 6.21 -52.49 -0.33 3.13 16
42 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16
43 H 0.08 0.85 6.61 -51.93 -0.34 0.50 16
44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
45 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16
46 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16
47 H 0.07 0.55 4.43 -51.93 -0.23 0.32 16
48 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
49 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
LS Contribution 384.69 15.07 5.80 5.80
Total: -1.00 -29.44 384.69 -9.50 -38.95
By element:
Atomic # 1 Polarization: 16.63 SS G_CDS: -6.95 Total: 9.68 kcal
Atomic # 6 Polarization: -24.87 SS G_CDS: -2.21 Total: -27.08 kcal
Atomic # 7 Polarization: -26.07 SS G_CDS: -0.34 Total: -26.41 kcal
Atomic # 8 Polarization: -14.09 SS G_CDS: -0.76 Total: -14.86 kcal
Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -29.44 -9.50 -38.95 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000917071586.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.652 kcal
(2) G-P(sol) polarization free energy of solvation -29.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.095 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.598 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds