Wall clock time and date at job start Tue Mar 31 2020 12:29:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50698 * 119.99476 * 2 1
4 4 N 1.46904 * 109.47195 * 124.99642 * 3 2 1
5 5 C 1.46901 * 111.00013 * 158.82819 * 4 3 2
6 6 C 1.52996 * 109.46989 * 200.16735 * 5 4 3
7 7 H 1.09004 * 109.47646 * 296.77159 * 6 5 4
8 8 O 1.42898 * 109.47435 * 56.77405 * 6 5 4
9 9 C 1.52998 * 109.47030 * 176.77030 * 6 5 4
10 10 O 1.42905 * 109.47431 * 175.00054 * 9 6 5
11 11 C 1.35677 * 117.00294 * 180.02562 * 10 9 6
12 12 C 1.39308 * 119.81600 * 359.72016 * 11 10 9
13 13 C 1.36439 * 120.18569 * 179.75866 * 12 11 10
14 14 C 1.40835 * 119.80593 * 0.52071 * 13 12 11
15 15 C 1.41221 * 120.17551 * 179.71325 * 14 13 12
16 16 H 1.07995 * 120.00007 * 28.97387 * 15 14 13
17 17 C 1.39887 * 119.99769 * 208.97042 * 15 14 13
18 18 N 1.30881 * 120.00326 * 10.38842 * 17 15 14
19 19 Si 1.86802 * 119.99580 * 190.38559 * 17 15 14
20 20 H 1.48499 * 109.47129 * 60.00635 * 19 17 15
21 21 H 1.48506 * 109.47143 * 180.02562 * 19 17 15
22 22 H 1.48500 * 109.47318 * 300.00075 * 19 17 15
23 23 C 1.40829 * 119.64629 * 359.73662 * 14 13 12
24 24 C 1.36448 * 119.80871 * 0.02562 * 23 14 13
25 25 C 1.46899 * 111.00300 * 282.78780 * 4 3 2
26 26 C 1.53000 * 109.46644 * 311.74178 * 25 4 3
27 27 C 1.53002 * 109.46845 * 71.73743 * 25 4 3
28 28 H 1.07999 * 120.00313 * 0.02562 * 1 2 3
29 29 H 1.08005 * 119.99474 * 180.02562 * 1 2 3
30 30 H 1.07999 * 120.00313 * 179.97438 * 2 1 3
31 31 H 1.09001 * 109.47546 * 4.99942 * 3 2 1
32 32 H 1.09004 * 109.47315 * 244.99441 * 3 2 1
33 33 H 1.09000 * 109.47262 * 320.17143 * 5 4 3
34 34 H 1.09004 * 109.46944 * 80.17003 * 5 4 3
35 35 H 0.96700 * 114.00322 * 59.99328 * 8 6 5
36 36 H 1.09005 * 109.47477 * 295.00009 * 9 6 5
37 37 H 1.09004 * 109.47203 * 55.00078 * 9 6 5
38 38 H 1.08008 * 119.91088 * 0.02954 * 12 11 10
39 39 H 1.07998 * 120.09665 * 180.25586 * 13 12 11
40 40 H 0.97002 * 119.99611 * 180.02562 * 18 17 15
41 41 H 1.07997 * 120.09569 * 179.97438 * 23 14 13
42 42 H 1.07998 * 119.90351 * 179.97438 * 24 23 14
43 43 H 1.08999 * 109.47304 * 191.73703 * 25 4 3
44 44 H 1.09003 * 109.46814 * 190.71213 * 26 25 4
45 45 H 1.09000 * 109.47189 * 310.69840 * 26 25 4
46 46 H 1.08994 * 109.47393 * 70.71112 * 26 25 4
47 47 H 1.08999 * 109.47086 * 292.05375 * 27 25 4
48 48 H 1.08998 * 109.47054 * 52.05832 * 27 25 4
49 49 H 1.09006 * 109.46640 * 172.05998 * 27 25 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 7 2.9961 1.3322 1.1346
5 6 4.0728 2.3055 0.9079
6 6 5.2607 1.9719 1.8126
7 1 4.9615 2.0701 2.8562
8 8 5.6874 0.6310 1.5636
9 6 6.4118 2.9361 1.5193
10 8 7.4772 2.7009 2.4421
11 6 8.5823 3.4783 2.3184
12 6 8.6391 4.4474 1.3193
13 6 9.7446 5.2366 1.1911
14 6 10.8347 5.0618 2.0655
15 6 11.9853 5.8703 1.9360
16 1 11.9000 6.8716 1.5405
17 6 13.2356 5.3742 2.3202
18 7 13.3763 4.1047 2.6058
19 14 14.7043 6.5237 2.4255
20 1 14.4242 7.5953 3.4147
21 1 15.9030 5.7575 2.8513
22 1 14.9534 7.1319 1.0939
23 6 10.7714 4.0762 3.0694
24 6 9.6564 3.2986 3.1871
25 6 2.2888 1.6127 2.3911
26 6 1.3644 2.8165 2.1981
27 6 1.4589 0.3916 2.7927
28 1 -0.5400 0.9353 -0.0004
29 1 -0.5399 -0.9354 0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3584 2.1317 0.0896
32 1 2.6213 1.4027 -0.9314
33 1 4.3872 2.2632 -0.1349
34 1 3.7111 3.3076 1.1380
35 1 5.9688 0.4705 0.6525
36 1 6.7699 2.7757 0.5023
37 1 6.0611 3.9629 1.6233
38 1 7.8038 4.5774 0.6469
39 1 9.7854 5.9903 0.4187
40 1 14.2432 3.7609 2.8726
41 1 11.6033 3.9356 3.7436
42 1 9.6063 2.5419 3.9561
43 1 3.0137 1.8330 3.1748
44 1 0.9861 3.1430 3.1669
45 1 1.9201 3.6303 1.7322
46 1 0.5287 2.5339 1.5582
47 1 0.6447 0.2557 2.0810
48 1 2.0933 -0.4948 2.7928
49 1 1.0475 0.5442 3.7906
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000917071586.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:29:59
Heat of formation + Delta-G solvation = -58.488511 kcal
Electronic energy + Delta-G solvation = -26450.417128 eV
Core-core repulsion = 22763.649677 eV
Total energy + Delta-G solvation = -3686.767451 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-40.77328 -40.10464 -38.48416 -37.33113 -35.14109 -34.49986 -33.05553 -31.88088
-31.08699 -30.58590 -28.11296 -27.56135 -26.50357 -25.01644 -23.46399 -22.53974
-22.25352 -21.09032 -20.09642 -19.24211 -18.71978 -17.74359 -17.39562 -17.06195
-16.89900 -16.43311 -15.97514 -15.75399 -15.65328 -15.07591 -15.03759 -14.87628
-14.62583 -14.05353 -14.03283 -13.89814 -13.82299 -13.48991 -13.23208 -13.11463
-12.98549 -12.78104 -12.67409 -12.64089 -12.44471 -12.36978 -12.19641 -11.86671
-11.80689 -11.68129 -11.59060 -11.57316 -11.19119 -10.94234 -10.88086 -9.92249
-9.56526 -9.17052 -8.86085 -8.53952 -6.25186 0.95030 1.02532 1.40051
1.40174 1.51644 1.53600 2.24093 2.39494 2.76665 3.07941 3.57830
3.69223 3.82205 3.89827 4.04512 4.08899 4.12440 4.14438 4.28230
4.34824 4.36094 4.36834 4.43052 4.46722 4.59909 4.62760 4.74998
4.79433 4.85980 4.88431 4.96860 5.02637 5.06867 5.12324 5.14544
5.21511 5.29858 5.32442 5.44697 5.58865 5.65151 5.79593 5.82202
5.87401 6.06645 6.12900 6.24800 6.27158 6.57494 6.80982 6.92604
6.96935 7.09877 8.42526
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.038453 B = 0.002012 C = 0.001998
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 727.994260 B =13910.177756 C =14010.404302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.136 4.136
3 C 0.070 3.930
4 N -0.526 5.526
5 C 0.031 3.969
6 C 0.128 3.872
7 H 0.087 0.913
8 O -0.557 6.557
9 C 0.030 3.970
10 O -0.332 6.332
11 C 0.008 3.992
12 C -0.169 4.169
13 C -0.201 4.201
14 C 0.051 3.949
15 C -0.499 4.499
16 H 0.076 0.924
17 C 0.028 3.972
18 N -0.842 5.842
19 Si 0.985 3.015
20 H -0.261 1.261
21 H -0.271 1.271
22 H -0.260 1.260
23 C -0.144 4.144
24 C -0.139 4.139
25 C 0.073 3.927
26 C -0.181 4.181
27 C -0.149 4.149
28 H 0.100 0.900
29 H 0.105 0.895
30 H 0.104 0.896
31 H 0.058 0.942
32 H 0.084 0.916
33 H 0.094 0.906
34 H 0.059 0.941
35 H 0.381 0.619
36 H 0.066 0.934
37 H 0.069 0.931
38 H 0.131 0.869
39 H 0.108 0.892
40 H 0.285 0.715
41 H 0.111 0.889
42 H 0.105 0.895
43 H 0.065 0.935
44 H 0.065 0.935
45 H 0.055 0.945
46 H 0.068 0.932
47 H 0.076 0.924
48 H 0.047 0.953
49 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.284 -4.429 -4.978 24.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.154 4.154
3 C -0.057 4.057
4 N -0.250 5.250
5 C -0.097 4.097
6 C 0.068 3.932
7 H 0.105 0.895
8 O -0.363 6.363
9 C -0.047 4.047
10 O -0.247 6.247
11 C -0.036 4.036
12 C -0.187 4.187
13 C -0.220 4.220
14 C 0.049 3.951
15 C -0.529 4.529
16 H 0.094 0.906
17 C -0.185 4.185
18 N -0.470 5.470
19 Si 0.806 3.194
20 H -0.185 1.185
21 H -0.195 1.195
22 H -0.185 1.185
23 C -0.164 4.164
24 C -0.158 4.158
25 C -0.035 4.035
26 C -0.239 4.239
27 C -0.206 4.206
28 H 0.119 0.881
29 H 0.123 0.877
30 H 0.122 0.878
31 H 0.076 0.924
32 H 0.102 0.898
33 H 0.113 0.887
34 H 0.077 0.923
35 H 0.230 0.770
36 H 0.084 0.916
37 H 0.087 0.913
38 H 0.148 0.852
39 H 0.126 0.874
40 H 0.096 0.904
41 H 0.129 0.871
42 H 0.124 0.876
43 H 0.083 0.917
44 H 0.084 0.916
45 H 0.074 0.926
46 H 0.086 0.914
47 H 0.095 0.905
48 H 0.066 0.934
49 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -23.075 -5.288 -4.114 24.028
hybrid contribution 0.787 1.294 -0.562 1.615
sum -22.288 -3.994 -4.676 23.121
Atomic orbital electron populations
1.23897 0.95584 1.02467 1.01355 1.22822 0.95711 0.98299 0.98604
1.21451 0.95001 0.95700 0.93540 1.61968 1.11318 1.49195 1.02485
1.22659 0.91612 0.94908 1.00521 1.21747 0.89979 0.81305 1.00147
0.89498 1.86602 1.86749 1.28026 1.34944 1.23526 0.87524 1.00469
0.93136 1.85893 1.24658 1.58114 1.56080 1.18729 0.88365 0.96355
1.00156 1.20709 0.99722 0.98472 0.99811 1.20870 0.96063 1.03721
1.01365 1.17977 0.93275 0.93161 0.90710 1.19672 0.92195 1.01139
1.39933 0.90574 1.26745 1.03177 0.96649 0.91883 1.69865 1.26900
1.14853 1.35338 0.85203 0.75965 0.78397 0.79788 1.18523 1.19511
1.18451 1.20960 0.96562 0.99210 0.99637 1.20036 0.93214 1.01949
1.00629 1.21734 0.95050 0.95095 0.91642 1.22422 1.00460 0.98207
1.02851 1.22082 1.00054 0.96979 1.01516 0.88148 0.87662 0.87772
0.92398 0.89759 0.88736 0.92272 0.77049 0.91617 0.91288 0.85163
0.87406 0.90440 0.87126 0.87648 0.91653 0.91579 0.92640 0.91361
0.90491 0.93384 0.92400
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.15 12.49 67.78 0.85 -1.30 16
2 C -0.14 -1.83 7.53 25.65 0.19 -1.64 16
3 C 0.07 0.95 5.18 85.56 0.44 1.39 16
4 N -0.53 -8.97 4.15 -875.51 -3.63 -12.60 16
5 C 0.03 0.53 4.57 86.30 0.39 0.92 16
6 C 0.13 3.06 3.29 30.59 0.10 3.16 16
7 H 0.09 2.33 6.87 -2.38 -0.02 2.31 16
8 O -0.56 -15.07 13.10 -144.34 -1.89 -16.96 16
9 C 0.03 0.84 4.36 71.98 0.31 1.15 16
10 O -0.33 -13.31 10.09 -85.31 -0.86 -14.17 16
11 C 0.01 0.36 6.71 22.78 0.15 0.51 16
12 C -0.17 -7.33 8.96 22.11 0.20 -7.14 16
13 C -0.20 -9.80 9.74 22.49 0.22 -9.58 16
14 C 0.05 2.79 5.55 -21.28 -0.12 2.68 16
15 C -0.50 -27.24 9.05 23.40 0.21 -27.03 16
16 H 0.08 3.96 7.87 -2.91 -0.02 3.94 16
17 C 0.03 1.43 5.26 85.23 0.45 1.87 16
18 N -0.84 -45.38 10.83 21.82 0.24 -45.15 16
19 Si 0.99 39.05 29.57 68.60 2.03 41.08 16
20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16
21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16
22 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16
23 C -0.14 -7.88 8.60 22.49 0.19 -7.69 16
24 C -0.14 -6.99 9.92 22.11 0.22 -6.77 16
25 C 0.07 1.24 2.79 44.92 0.13 1.37 16
26 C -0.18 -2.44 8.08 71.98 0.58 -1.86 16
27 C -0.15 -2.43 8.37 71.98 0.60 -1.83 16
28 H 0.10 0.95 7.84 -2.91 -0.02 0.93 16
29 H 0.11 1.00 8.06 -2.91 -0.02 0.97 16
30 H 0.10 1.60 8.06 -2.91 -0.02 1.58 16
31 H 0.06 0.71 5.09 -2.39 -0.01 0.70 16
32 H 0.08 1.05 7.56 -2.38 -0.02 1.03 16
33 H 0.09 1.32 7.57 -2.39 -0.02 1.31 16
34 H 0.06 0.91 6.45 -2.39 -0.02 0.90 16
35 H 0.38 7.83 9.05 -74.06 -0.67 7.16 16
36 H 0.07 1.71 7.64 -2.38 -0.02 1.69 16
37 H 0.07 1.79 7.66 -2.38 -0.02 1.77 16
38 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16
39 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16
40 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16
41 H 0.11 6.31 6.21 -2.91 -0.02 6.29 16
42 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16
43 H 0.07 1.32 6.61 -2.39 -0.02 1.30 16
44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
45 H 0.05 0.75 6.56 -2.39 -0.02 0.74 16
46 H 0.07 0.81 6.55 -2.39 -0.02 0.80 16
47 H 0.08 1.10 4.43 -2.39 -0.01 1.09 16
48 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
49 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16
Total: -1.00 -64.28 384.69 1.28 -63.00
By element:
Atomic # 1 Polarization: 36.29 SS G_CDS: 0.27 Total: 36.56 kcal
Atomic # 6 Polarization: -56.89 SS G_CDS: 5.13 Total: -51.76 kcal
Atomic # 7 Polarization: -54.35 SS G_CDS: -3.40 Total: -57.74 kcal
Atomic # 8 Polarization: -28.38 SS G_CDS: -2.75 Total: -31.13 kcal
Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal
Total: -64.28 1.28 -63.00 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000917071586.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.507 kcal
(2) G-P(sol) polarization free energy of solvation -64.277 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.996 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.489 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds