Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46891 * 2 1 4 4 C 1.34230 * 117.00087 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99935 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99971 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.46980 * 60.00217 * 6 4 3 8 8 C 1.52992 * 109.47183 * 300.00313 * 6 4 3 9 9 C 1.52996 * 109.47167 * 175.00135 * 8 6 4 10 10 C 1.50700 * 109.47359 * 179.97438 * 9 8 6 11 11 C 1.38235 * 120.00170 * 269.72234 * 10 9 8 12 12 C 1.38237 * 119.99958 * 179.76286 * 11 10 9 13 13 C 1.38234 * 119.99726 * 0.51424 * 12 11 10 14 14 C 1.38232 * 120.00298 * 359.74227 * 13 12 11 15 15 C 1.38233 * 120.00017 * 90.00176 * 10 9 8 16 16 N 1.46902 * 109.46757 * 179.97438 * 6 4 3 17 17 C 1.46890 * 111.00268 * 275.42662 * 16 6 4 18 18 H 1.09005 * 109.47275 * 33.17784 * 17 16 6 19 19 C 1.50698 * 109.47369 * 153.17366 * 17 16 6 20 20 H 1.08005 * 119.99993 * 0.02562 * 19 17 16 21 21 C 1.37879 * 120.00411 * 180.02562 * 19 17 16 22 22 N 1.31523 * 119.99821 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00100 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47177 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47343 * 120.00105 * 23 21 19 26 26 H 1.48503 * 109.46844 * 239.99987 * 23 21 19 27 27 C 1.53008 * 109.47304 * 273.17619 * 17 16 6 28 28 C 1.52994 * 109.46906 * 296.42265 * 27 17 16 29 29 H 1.08999 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47533 * 299.99756 * 1 2 3 31 31 H 1.09000 * 109.47491 * 60.00296 * 1 2 3 32 32 H 1.08994 * 109.47366 * 240.00517 * 2 1 3 33 33 H 1.09000 * 109.47491 * 119.99704 * 2 1 3 34 34 H 1.09008 * 109.47153 * 294.99917 * 8 6 4 35 35 H 1.08997 * 109.47659 * 54.99746 * 8 6 4 36 36 H 1.09004 * 109.47371 * 299.99831 * 9 8 6 37 37 H 1.09001 * 109.47456 * 59.99688 * 9 8 6 38 38 H 1.07998 * 119.99938 * 0.02562 * 11 10 9 39 39 H 1.08002 * 119.99660 * 180.23165 * 12 11 10 40 40 H 1.08005 * 119.99501 * 179.71890 * 13 12 11 41 41 H 1.08005 * 120.00089 * 179.97438 * 14 13 12 42 42 H 1.08004 * 119.99686 * 359.97438 * 15 10 9 43 43 H 1.00905 * 111.00012 * 39.38721 * 16 6 4 44 44 H 0.96996 * 119.99880 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.47041 * 176.42430 * 27 17 16 46 46 H 1.08996 * 109.46481 * 56.42433 * 27 17 16 47 47 H 1.08995 * 109.47322 * 174.45071 * 28 27 17 48 48 H 1.08999 * 109.47520 * 294.45760 * 28 27 17 49 49 H 1.09007 * 109.47110 * 54.45352 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 -0.0012 7 1 3.5850 3.4700 0.8888 8 6 3.4485 3.6842 -1.2503 9 6 3.9298 5.1352 -1.1897 10 6 3.4654 5.8704 -2.4204 11 6 4.2630 5.9018 -3.5490 12 6 3.8347 6.5721 -4.6796 13 6 2.6136 7.2200 -4.6780 14 6 1.8184 7.1931 -3.5476 15 6 2.2443 6.5184 -2.4188 16 7 5.3876 2.8607 -0.0010 17 6 5.9065 2.7043 1.3642 18 1 5.2021 2.1195 1.9559 19 6 7.2348 1.9941 1.3185 20 1 7.6521 1.6897 0.3700 21 6 7.9176 1.7328 2.4876 22 7 7.4097 2.1038 3.6426 23 14 9.5645 0.8531 2.4307 24 1 9.9128 0.5451 1.0204 25 1 10.6120 1.7248 3.0208 26 1 9.4776 -0.4106 3.2059 27 6 6.0871 4.0832 2.0024 28 6 7.1420 4.8713 1.2235 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8582 3.2023 -2.1382 35 1 2.3597 3.6642 -1.2959 36 1 3.5202 5.6171 -0.3019 37 1 5.0187 5.1553 -1.1442 38 1 5.2188 5.3990 -3.5489 39 1 4.4562 6.5934 -5.5626 40 1 2.2811 7.7475 -5.5598 41 1 0.8645 7.6997 -3.5462 42 1 1.6230 6.4973 -1.5356 43 1 5.7106 2.1144 -0.5985 44 1 7.8898 1.9197 4.4651 45 1 6.4115 3.9653 3.0363 46 1 5.1397 4.6216 1.9779 47 1 7.2003 5.8865 1.6160 48 1 8.1114 4.3844 1.3299 49 1 6.8660 4.9046 0.1695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930692495.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = -82.030147 kcal Electronic energy + Delta-G solvation = -27468.905584 eV Core-core repulsion = 23781.117292 eV Total energy + Delta-G solvation = -3687.788293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.25178 -39.21093 -37.12658 -35.80603 -34.45887 -32.39265 -31.64984 -30.90541 -30.84328 -29.21974 -26.71443 -25.32606 -23.50900 -23.17322 -22.51364 -22.26134 -20.68628 -20.32386 -18.98610 -17.53369 -16.72591 -16.56380 -16.15647 -15.87338 -15.33272 -15.00767 -14.86004 -14.16566 -14.07727 -13.67961 -13.44058 -13.38306 -13.21892 -13.04430 -12.86883 -12.74060 -12.33582 -12.10471 -11.78772 -11.77245 -11.64367 -11.47484 -11.30183 -11.05776 -10.95598 -10.84859 -10.62888 -10.50116 -10.34583 -10.32636 -10.22628 -9.93243 -9.71638 -9.37828 -8.88755 -8.78883 -8.62287 -8.46726 -7.51905 -5.99228 -4.02495 1.40629 1.43578 2.65053 3.01680 3.31400 3.39338 3.43842 3.83362 4.43382 4.79568 4.89987 4.92753 4.96153 5.01357 5.04035 5.12502 5.18341 5.31340 5.34158 5.40209 5.50316 5.54664 5.61304 5.70208 5.75026 5.78636 5.88101 5.94613 6.04238 6.06836 6.14860 6.32286 6.48593 6.50752 6.53197 6.55379 6.68200 6.75848 6.79851 6.85940 7.06808 7.19348 7.19477 7.46560 7.71493 7.77823 7.83776 8.14566 8.18058 8.30557 8.58710 9.02475 9.60906 11.07520 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009479 B = 0.004140 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.273165 B = 6760.960351 C = 8934.909547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.365 6.365 4 C 0.429 3.571 5 O -0.495 6.495 6 C 0.099 3.901 7 H 0.109 0.891 8 C -0.090 4.090 9 C -0.075 4.075 10 C -0.070 4.070 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.120 4.120 16 N -0.650 5.650 17 C 0.215 3.785 18 H 0.003 0.997 19 C -0.503 4.503 20 H 0.059 0.941 21 C 0.063 3.937 22 N -0.891 5.891 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.286 1.286 27 C -0.102 4.102 28 C -0.119 4.119 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.345 0.655 44 H 0.259 0.741 45 H 0.085 0.915 46 H 0.011 0.989 47 H 0.013 0.987 48 H 0.053 0.947 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.445 6.102 -11.744 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.281 6.281 4 C 0.268 3.732 5 O -0.380 6.380 6 C -0.015 4.015 7 H 0.126 0.874 8 C -0.128 4.128 9 C -0.112 4.112 10 C -0.070 4.070 11 C -0.133 4.133 12 C -0.139 4.139 13 C -0.151 4.151 14 C -0.140 4.140 15 C -0.138 4.138 16 N -0.282 5.282 17 C 0.107 3.893 18 H 0.021 0.979 19 C -0.542 4.542 20 H 0.078 0.922 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.141 4.141 28 C -0.176 4.176 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.165 0.835 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.030 0.970 47 H 0.032 0.968 48 H 0.072 0.928 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.085 6.442 -11.551 18.605 hybrid contribution 0.659 -1.706 0.325 1.858 sum -12.426 4.736 -11.226 17.402 Atomic orbital electron populations 1.21777 0.93089 1.02537 1.03272 1.22920 0.94980 0.81437 1.02309 1.86559 1.25771 1.31432 1.84383 1.25758 0.80175 0.95061 0.72163 1.90702 1.60107 1.42927 1.44309 1.21738 0.91466 0.87496 1.00809 0.87367 1.21437 1.00117 0.94839 0.96427 1.20575 1.03381 0.93310 0.93939 1.20104 0.94096 0.96868 0.95961 1.21170 1.00029 0.99312 0.92813 1.21141 0.96445 0.98097 0.98241 1.21077 0.95200 1.00615 0.98248 1.21105 0.99617 0.99764 0.93559 1.21110 0.96204 0.98130 0.98378 1.61176 1.00985 1.50704 1.15321 1.19205 0.94614 0.92925 0.82522 0.97937 1.21129 1.03935 1.36212 0.92942 0.92247 1.24847 0.97824 0.95732 0.95432 1.69894 1.38533 1.47081 0.97462 0.86525 0.83987 0.79327 0.78090 1.19772 1.21074 1.21246 1.21459 0.95149 0.95505 1.01951 1.21449 1.00551 0.96114 0.99507 0.90684 0.91586 0.91699 0.91710 0.91525 0.91662 0.91303 0.91143 0.88631 0.85775 0.86423 0.86644 0.86507 0.86151 0.83481 0.93111 0.89623 0.97040 0.96783 0.92838 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.79 10.03 -39.26 -0.39 -6.19 16 4 C 0.43 7.88 6.95 36.01 0.25 8.13 16 5 O -0.49 -10.84 15.39 -18.75 -0.29 -11.13 16 6 C 0.10 1.68 2.31 -68.87 -0.16 1.52 16 7 H 0.11 1.86 7.23 -51.93 -0.38 1.49 16 8 C -0.09 -1.23 4.84 -26.74 -0.13 -1.36 16 9 C -0.07 -0.98 5.23 -27.89 -0.15 -1.13 16 10 C -0.07 -0.86 5.13 -104.62 -0.54 -1.40 16 11 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 12 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 13 C -0.13 -1.35 10.05 -39.59 -0.40 -1.74 16 14 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 15 C -0.12 -1.35 9.70 -39.59 -0.38 -1.74 16 16 N -0.65 -12.93 4.66 -102.17 -0.48 -13.41 16 17 C 0.21 5.19 1.92 -68.87 -0.13 5.06 16 18 H 0.00 0.08 7.60 -51.93 -0.39 -0.31 16 19 C -0.50 -13.51 7.26 -34.44 -0.25 -13.76 16 20 H 0.06 1.61 7.59 -52.48 -0.40 1.21 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -25.22 11.36 55.43 0.63 -24.59 16 23 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 C -0.10 -2.35 5.56 -26.73 -0.15 -2.50 16 28 C -0.12 -2.53 9.44 37.15 0.35 -2.18 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.07 0.87 7.99 -51.93 -0.42 0.46 16 36 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.10 1.40 7.24 -51.93 -0.38 1.03 16 38 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 42 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.34 7.31 7.21 -39.29 -0.28 7.03 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.09 2.24 6.17 -51.93 -0.32 1.92 16 46 H 0.01 0.23 7.52 -51.93 -0.39 -0.16 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.05 1.25 7.33 -51.93 -0.38 0.87 16 49 H 0.05 0.94 7.11 -51.92 -0.37 0.57 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -29.85 398.94 -10.22 -40.06 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.33 Total: 7.37 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.34 Total: -14.64 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.15 Total: -38.00 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.68 Total: -17.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.85 -10.22 -40.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930692495.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.967 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds