Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46891 * 2 1 4 4 C 1.34230 * 117.00087 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99935 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99971 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.46980 * 60.00217 * 6 4 3 8 8 C 1.52992 * 109.47183 * 300.00313 * 6 4 3 9 9 C 1.52996 * 109.47167 * 175.00135 * 8 6 4 10 10 C 1.50700 * 109.47359 * 179.97438 * 9 8 6 11 11 C 1.38235 * 120.00170 * 269.72234 * 10 9 8 12 12 C 1.38237 * 119.99958 * 179.76286 * 11 10 9 13 13 C 1.38234 * 119.99726 * 0.51424 * 12 11 10 14 14 C 1.38232 * 120.00298 * 359.74227 * 13 12 11 15 15 C 1.38233 * 120.00017 * 90.00176 * 10 9 8 16 16 N 1.46902 * 109.46757 * 179.97438 * 6 4 3 17 17 C 1.46890 * 111.00268 * 275.42662 * 16 6 4 18 18 H 1.09005 * 109.47275 * 33.17784 * 17 16 6 19 19 C 1.50698 * 109.47369 * 153.17366 * 17 16 6 20 20 H 1.08005 * 119.99993 * 0.02562 * 19 17 16 21 21 C 1.37879 * 120.00411 * 180.02562 * 19 17 16 22 22 N 1.31523 * 119.99821 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 120.00100 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47177 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47343 * 120.00105 * 23 21 19 26 26 H 1.48503 * 109.46844 * 239.99987 * 23 21 19 27 27 C 1.53008 * 109.47304 * 273.17619 * 17 16 6 28 28 C 1.52994 * 109.46906 * 296.42265 * 27 17 16 29 29 H 1.08999 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47533 * 299.99756 * 1 2 3 31 31 H 1.09000 * 109.47491 * 60.00296 * 1 2 3 32 32 H 1.08994 * 109.47366 * 240.00517 * 2 1 3 33 33 H 1.09000 * 109.47491 * 119.99704 * 2 1 3 34 34 H 1.09008 * 109.47153 * 294.99917 * 8 6 4 35 35 H 1.08997 * 109.47659 * 54.99746 * 8 6 4 36 36 H 1.09004 * 109.47371 * 299.99831 * 9 8 6 37 37 H 1.09001 * 109.47456 * 59.99688 * 9 8 6 38 38 H 1.07998 * 119.99938 * 0.02562 * 11 10 9 39 39 H 1.08002 * 119.99660 * 180.23165 * 12 11 10 40 40 H 1.08005 * 119.99501 * 179.71890 * 13 12 11 41 41 H 1.08005 * 120.00089 * 179.97438 * 14 13 12 42 42 H 1.08004 * 119.99686 * 359.97438 * 15 10 9 43 43 H 1.00905 * 111.00012 * 39.38721 * 16 6 4 44 44 H 0.96996 * 119.99880 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.47041 * 176.42430 * 27 17 16 46 46 H 1.08996 * 109.46481 * 56.42433 * 27 17 16 47 47 H 1.08995 * 109.47322 * 174.45071 * 28 27 17 48 48 H 1.08999 * 109.47520 * 294.45760 * 28 27 17 49 49 H 1.09007 * 109.47110 * 54.45352 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 -0.0012 7 1 3.5850 3.4700 0.8888 8 6 3.4485 3.6842 -1.2503 9 6 3.9298 5.1352 -1.1897 10 6 3.4654 5.8704 -2.4204 11 6 4.2630 5.9018 -3.5490 12 6 3.8347 6.5721 -4.6796 13 6 2.6136 7.2200 -4.6780 14 6 1.8184 7.1931 -3.5476 15 6 2.2443 6.5184 -2.4188 16 7 5.3876 2.8607 -0.0010 17 6 5.9065 2.7043 1.3642 18 1 5.2021 2.1195 1.9559 19 6 7.2348 1.9941 1.3185 20 1 7.6521 1.6897 0.3700 21 6 7.9176 1.7328 2.4876 22 7 7.4097 2.1038 3.6426 23 14 9.5645 0.8531 2.4307 24 1 9.9128 0.5451 1.0204 25 1 10.6120 1.7248 3.0208 26 1 9.4776 -0.4106 3.2059 27 6 6.0871 4.0832 2.0024 28 6 7.1420 4.8713 1.2235 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8582 3.2023 -2.1382 35 1 2.3597 3.6642 -1.2959 36 1 3.5202 5.6171 -0.3019 37 1 5.0187 5.1553 -1.1442 38 1 5.2188 5.3990 -3.5489 39 1 4.4562 6.5934 -5.5626 40 1 2.2811 7.7475 -5.5598 41 1 0.8645 7.6997 -3.5462 42 1 1.6230 6.4973 -1.5356 43 1 5.7106 2.1144 -0.5985 44 1 7.8898 1.9197 4.4651 45 1 6.4115 3.9653 3.0363 46 1 5.1397 4.6216 1.9779 47 1 7.2003 5.8865 1.6160 48 1 8.1114 4.3844 1.3299 49 1 6.8660 4.9046 0.1695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930692495.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -96.315066 kcal Electronic energy + Delta-G solvation = -27469.525025 eV Core-core repulsion = 23781.117292 eV Total energy + Delta-G solvation = -3688.407733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70779 -40.06512 -38.62494 -37.36186 -35.92918 -33.92646 -32.89788 -32.41437 -31.64158 -30.56653 -28.22200 -27.00109 -25.14000 -24.46520 -23.38055 -23.31561 -21.90527 -21.58511 -20.76075 -19.01102 -18.32503 -17.71233 -17.52699 -17.23226 -16.88815 -16.23204 -15.90168 -15.59930 -15.46094 -15.26250 -14.91285 -14.55318 -14.37530 -14.14058 -13.96195 -13.79457 -13.66216 -13.53473 -13.35074 -12.99579 -12.88404 -12.79491 -12.70115 -12.51472 -12.43968 -12.35950 -12.14047 -11.94368 -11.78800 -11.57914 -11.54899 -11.50250 -11.40380 -11.17057 -10.78746 -10.55494 -9.69931 -9.49894 -9.24228 -8.09653 -6.18942 0.57185 0.62204 1.16558 1.37927 1.40412 1.51096 1.71775 2.42066 3.00128 3.19903 3.42065 3.66372 3.95344 3.96453 4.05223 4.09293 4.17515 4.27522 4.30794 4.35454 4.45648 4.50856 4.61475 4.69167 4.78547 4.80245 4.82373 4.85161 4.90366 4.94693 5.00403 5.11649 5.15033 5.24645 5.30417 5.35219 5.39487 5.43521 5.50989 5.59391 5.70528 5.72493 5.73774 5.85389 5.91130 5.94169 6.26075 6.27041 6.34793 6.61381 6.78506 6.97109 7.47665 8.95967 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009479 B = 0.004140 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.273165 B = 6760.960351 C = 8934.909547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.358 6.358 4 C 0.431 3.569 5 O -0.537 6.537 6 C 0.099 3.901 7 H 0.109 0.891 8 C -0.075 4.075 9 C -0.066 4.066 10 C -0.085 4.085 11 C -0.133 4.133 12 C -0.129 4.129 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.129 4.129 16 N -0.638 5.638 17 C 0.225 3.775 18 H -0.040 1.040 19 C -0.515 4.515 20 H 0.052 0.948 21 C 0.018 3.982 22 N -0.916 5.916 23 Si 0.949 3.051 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.287 1.287 27 C -0.095 4.095 28 C -0.107 4.107 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.337 0.663 44 H 0.259 0.741 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.035 0.965 48 H 0.027 0.973 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 7.290 -13.364 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.274 6.274 4 C 0.273 3.727 5 O -0.426 6.426 6 C -0.014 4.014 7 H 0.127 0.873 8 C -0.113 4.113 9 C -0.104 4.104 10 C -0.085 4.085 11 C -0.151 4.151 12 C -0.147 4.147 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.147 4.147 16 N -0.268 5.268 17 C 0.117 3.883 18 H -0.023 1.023 19 C -0.553 4.553 20 H 0.070 0.930 21 C -0.181 4.181 22 N -0.556 5.556 23 Si 0.775 3.225 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.213 1.213 27 C -0.134 4.134 28 C -0.164 4.164 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.156 0.844 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.638 7.649 -13.185 21.133 hybrid contribution 1.008 -2.092 0.786 2.452 sum -13.630 5.556 -12.399 19.245 Atomic orbital electron populations 1.21792 0.89634 1.04375 1.03909 1.23261 0.97630 0.79932 1.01752 1.86542 1.24100 1.33151 1.83614 1.25891 0.80827 0.94940 0.71026 1.90684 1.61198 1.44242 1.46476 1.21853 0.89611 0.87314 1.02641 0.87318 1.21351 1.00954 0.94828 0.94196 1.20434 1.02175 0.92832 0.94916 1.20038 0.94982 0.97879 0.95587 1.21285 1.00170 1.00108 0.93491 1.21403 0.97116 0.97758 0.98391 1.21434 0.94734 1.00036 0.99122 1.21436 1.00554 0.99274 0.93124 1.21315 0.95929 0.98064 0.99374 1.61100 1.03120 1.49957 1.12637 1.18937 0.92656 0.92689 0.84032 1.02276 1.21397 1.05001 1.36331 0.92606 0.93014 1.25541 1.00835 0.96511 0.95250 1.70018 1.39691 1.47998 0.97856 0.85644 0.80561 0.78188 0.78084 1.19371 1.20321 1.21344 1.21299 0.96640 0.95293 1.00158 1.21312 0.98372 0.96615 1.00121 0.88243 0.91328 0.90623 0.91611 0.92916 0.91923 0.89577 0.90721 0.90433 0.86186 0.84767 0.84242 0.84167 0.84990 0.84377 0.93162 0.92786 0.94996 0.94575 0.95406 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.27 6.19 71.98 0.45 1.71 16 3 O -0.36 -11.23 10.03 -51.41 -0.52 -11.74 16 4 C 0.43 16.13 6.95 71.24 0.49 16.63 16 5 O -0.54 -24.37 15.39 21.98 0.34 -24.03 16 6 C 0.10 3.39 2.31 44.17 0.10 3.49 16 7 H 0.11 3.74 7.23 -2.39 -0.02 3.72 16 8 C -0.08 -2.00 4.84 30.59 0.15 -1.85 16 9 C -0.07 -1.67 5.23 29.85 0.16 -1.51 16 10 C -0.08 -1.97 5.13 -19.87 -0.10 -2.07 16 11 C -0.13 -3.03 9.70 22.27 0.22 -2.82 16 12 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 13 C -0.14 -2.35 10.05 22.27 0.22 -2.13 16 14 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 15 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 16 N -0.64 -25.92 4.66 -477.17 -2.22 -28.15 16 17 C 0.23 11.23 1.92 44.17 0.08 11.31 16 18 H -0.04 -2.33 7.60 -2.38 -0.02 -2.35 16 19 C -0.51 -28.41 7.26 25.60 0.19 -28.22 16 20 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 21 C 0.02 0.98 5.30 84.65 0.45 1.43 16 22 N -0.92 -53.26 11.36 21.45 0.24 -53.01 16 23 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 C -0.10 -4.45 5.56 30.59 0.17 -4.28 16 28 C -0.11 -4.52 9.44 71.98 0.68 -3.85 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 33 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.09 2.02 7.99 -2.39 -0.02 2.00 16 36 H 0.07 1.80 8.09 -2.38 -0.02 1.78 16 37 H 0.08 2.24 7.24 -2.39 -0.02 2.22 16 38 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.34 14.74 7.21 -89.69 -0.65 14.09 16 44 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.05 2.89 6.17 -2.39 -0.01 2.87 16 46 H 0.03 1.32 7.52 -2.39 -0.02 1.30 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.03 1.29 7.33 -2.39 -0.02 1.27 16 49 H 0.06 2.36 7.11 -2.38 -0.02 2.34 16 Total: -1.00 -66.07 398.94 4.80 -61.28 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.27 Total: 29.24 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.66 Total: -20.50 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.98 Total: -81.16 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.18 Total: -35.78 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.07 4.80 -61.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930692495.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.038 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds