Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45200 * 109.46812 * 2 1 4 4 C 1.34234 * 117.00092 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99211 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00286 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47063 * 32.87365 * 6 4 3 8 8 C 1.52994 * 109.47044 * 272.87315 * 6 4 3 9 9 C 1.53001 * 109.47228 * 175.00055 * 8 6 4 10 10 C 1.50698 * 109.47545 * 180.02562 * 9 8 6 11 11 C 1.38241 * 119.99941 * 269.73012 * 10 9 8 12 12 C 1.38231 * 120.00223 * 179.76243 * 11 10 9 13 13 C 1.38235 * 119.99710 * 0.50804 * 12 11 10 14 14 C 1.38232 * 120.00187 * 359.74202 * 13 12 11 15 15 C 1.38231 * 120.00358 * 89.99471 * 10 9 8 16 16 N 1.46898 * 109.47050 * 152.87267 * 6 4 3 17 17 C 1.46894 * 110.99965 * 277.51900 * 16 6 4 18 18 H 1.08992 * 109.47730 * 36.45401 * 17 16 6 19 19 C 1.50708 * 109.46864 * 276.45491 * 17 16 6 20 20 H 1.07996 * 119.99678 * 0.02562 * 19 17 16 21 21 C 1.37879 * 119.99639 * 180.02562 * 19 17 16 22 22 N 1.31516 * 119.99520 * 180.02562 * 21 19 17 23 23 Si 1.86792 * 120.00338 * 359.97438 * 21 19 17 24 24 H 1.48505 * 109.46869 * 90.00504 * 23 21 19 25 25 H 1.48503 * 109.47535 * 209.99890 * 23 21 19 26 26 H 1.48501 * 109.47401 * 330.00518 * 23 21 19 27 27 C 1.53004 * 109.47246 * 156.45994 * 17 16 6 28 28 C 1.53004 * 109.46608 * 295.01584 * 27 17 16 29 29 H 1.09001 * 109.46919 * 60.00152 * 1 2 3 30 30 H 1.08994 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47412 * 300.00498 * 1 2 3 32 32 H 1.08994 * 109.46894 * 239.99597 * 2 1 3 33 33 H 1.09000 * 109.46791 * 119.99073 * 2 1 3 34 34 H 1.09002 * 109.47602 * 54.99952 * 8 6 4 35 35 H 1.08996 * 109.47386 * 294.99950 * 8 6 4 36 36 H 1.09001 * 109.46605 * 299.99798 * 9 8 6 37 37 H 1.09001 * 109.46863 * 60.00027 * 9 8 6 38 38 H 1.08004 * 119.99628 * 359.97438 * 11 10 9 39 39 H 1.07994 * 120.00196 * 180.22286 * 12 11 10 40 40 H 1.08002 * 119.99888 * 179.72732 * 13 12 11 41 41 H 1.08005 * 120.00301 * 179.97438 * 14 13 12 42 42 H 1.07999 * 119.99864 * 0.02562 * 15 10 9 43 43 H 1.00900 * 110.99948 * 41.46741 * 16 6 4 44 44 H 0.97003 * 119.99991 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.47061 * 55.01671 * 27 17 16 46 46 H 1.09002 * 109.46907 * 175.02226 * 27 17 16 47 47 H 1.08996 * 109.47319 * 305.31600 * 28 27 17 48 48 H 1.09001 * 109.46866 * 65.31773 * 28 27 17 49 49 H 1.09002 * 109.46748 * 185.31306 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.2622 3.6033 0.5567 8 6 4.0483 3.4360 -1.4420 9 6 4.5150 4.8931 -1.4382 10 6 4.6401 5.3843 -2.8573 11 6 5.8390 5.2497 -3.5322 12 6 5.9523 5.6958 -4.8356 13 6 4.8699 6.2861 -5.4607 14 6 3.6725 6.4255 -4.7841 15 6 3.5576 5.9745 -3.4824 16 7 5.2471 2.9191 0.6299 17 6 5.1346 2.9731 2.0935 18 1 4.2645 2.3993 2.4125 19 6 4.9797 4.4064 2.5328 20 1 4.9658 5.1978 1.7981 21 6 4.8557 4.7071 3.8727 22 7 4.7201 5.9578 4.2560 23 14 4.8790 3.3381 5.1433 24 1 6.2765 3.0939 5.5822 25 1 4.0549 3.7345 6.3134 26 1 4.3242 2.0975 4.5446 27 6 6.3960 2.3799 2.7243 28 6 6.4871 0.8919 2.3796 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.0801 3.3659 -1.9379 35 1 4.7749 2.8232 -1.9755 36 1 3.7883 5.5058 -0.9047 37 1 5.4832 4.9631 -0.9424 38 1 6.6861 4.7927 -3.0422 39 1 6.8879 5.5873 -5.3641 40 1 4.9597 6.6387 -6.4776 41 1 2.8269 6.8871 -5.2723 42 1 2.6223 6.0840 -2.9536 43 1 5.7754 2.1107 0.3375 44 1 4.6325 6.1694 5.1986 45 1 7.2737 2.8970 2.3368 46 1 6.3518 2.4999 3.8068 47 1 5.5675 0.3917 2.6831 48 1 6.6261 0.7759 1.3047 49 1 7.3327 0.4484 2.9053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930692496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = -91.795539 kcal Electronic energy + Delta-G solvation = -27564.008844 eV Core-core repulsion = 23875.797093 eV Total energy + Delta-G solvation = -3688.211752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.77339 -40.09602 -38.82197 -37.44357 -35.99196 -34.22780 -33.27740 -32.55448 -31.67055 -30.59966 -28.96158 -27.31738 -24.68159 -24.35191 -23.36223 -23.32868 -21.93978 -21.58605 -21.41731 -19.12840 -18.70198 -17.92344 -17.54452 -17.41174 -16.95820 -16.25916 -16.12028 -15.86746 -15.65793 -15.17479 -15.05432 -14.60473 -14.55580 -14.21258 -14.14644 -13.96076 -13.75665 -13.68788 -13.54721 -13.22249 -13.13563 -12.92052 -12.76336 -12.59699 -12.53066 -12.35509 -12.26819 -12.00475 -11.88528 -11.72076 -11.60822 -11.54572 -11.47068 -11.26433 -11.19409 -10.68248 -9.72623 -9.54601 -9.33845 -8.26283 -6.26871 0.54237 0.59521 1.07690 1.26152 1.32214 1.40017 1.67802 2.30177 2.97821 3.05593 3.22386 3.62102 3.89569 3.95848 4.03248 4.05543 4.18903 4.20982 4.24936 4.27448 4.28397 4.30243 4.37936 4.42055 4.47670 4.63667 4.74722 4.75038 4.77291 4.81449 4.88013 4.90156 4.98466 5.01204 5.09034 5.10939 5.17986 5.21165 5.30682 5.35715 5.40321 5.49084 5.66702 5.67899 5.70672 5.88660 5.93050 6.23361 6.30149 6.66769 6.73271 6.82120 7.37017 8.89824 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.004426 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.010273 B = 6325.397421 C = 7994.886826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.440 3.560 5 O -0.530 6.530 6 C 0.102 3.898 7 H 0.100 0.900 8 C -0.073 4.073 9 C -0.064 4.064 10 C -0.087 4.087 11 C -0.131 4.131 12 C -0.126 4.126 13 C -0.134 4.134 14 C -0.125 4.125 15 C -0.132 4.132 16 N -0.639 5.639 17 C 0.194 3.806 18 H -0.017 1.017 19 C -0.493 4.493 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.942 5.942 23 Si 0.933 3.067 24 H -0.265 1.265 25 H -0.298 1.298 26 H -0.262 1.262 27 C -0.134 4.134 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.127 0.873 43 H 0.343 0.657 44 H 0.264 0.736 45 H 0.072 0.928 46 H 0.041 0.959 47 H 0.034 0.966 48 H 0.064 0.936 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -7.728 -16.733 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.280 6.280 4 C 0.282 3.718 5 O -0.420 6.420 6 C -0.011 4.011 7 H 0.118 0.882 8 C -0.111 4.111 9 C -0.101 4.101 10 C -0.087 4.087 11 C -0.149 4.149 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.150 4.150 16 N -0.272 5.272 17 C 0.084 3.916 18 H 0.001 0.999 19 C -0.532 4.532 20 H 0.071 0.929 21 C -0.178 4.178 22 N -0.582 5.582 23 Si 0.762 3.238 24 H -0.192 1.192 25 H -0.226 1.226 26 H -0.187 1.187 27 C -0.172 4.172 28 C -0.202 4.202 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.124 -7.269 -16.649 18.628 hybrid contribution -0.232 -1.293 1.547 2.030 sum -4.356 -8.562 -15.101 17.898 Atomic orbital electron populations 1.21821 0.90244 1.04445 1.03666 1.23310 0.97378 0.79566 1.02253 1.86591 1.24391 1.33702 1.83281 1.25630 0.80901 0.94496 0.70818 1.90571 1.60838 1.43668 1.46877 1.21658 0.91599 0.88397 0.99463 0.88183 1.21306 1.02342 0.96340 0.91148 1.20346 1.02946 0.94511 0.92298 1.20038 0.94369 0.98430 0.95839 1.21282 0.97424 1.00710 0.95520 1.21421 0.99801 0.98476 0.94679 1.21455 0.93081 0.99676 1.00950 1.21431 0.98716 0.99702 0.94438 1.21301 0.98634 0.99233 0.95875 1.60796 1.11940 1.46268 1.08188 1.19488 0.92562 0.94607 0.84909 0.99945 1.21192 1.47621 0.92105 0.92233 0.92904 1.25598 0.95005 0.96889 1.00303 1.70007 1.52295 1.19262 1.16667 0.86092 0.78163 0.80561 0.78985 1.19151 1.22628 1.18702 1.22005 1.00046 0.95926 0.99216 1.21782 1.01080 0.95281 1.02019 0.90777 0.87843 0.91949 0.90709 0.92358 0.89984 0.91052 0.92002 0.90848 0.85949 0.84309 0.83891 0.84103 0.85541 0.83510 0.92665 0.90945 0.94116 0.94687 0.91699 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.05 1.20 6.19 71.98 0.45 1.65 16 3 O -0.36 -11.57 10.22 -51.45 -0.53 -12.09 16 4 C 0.44 15.42 6.67 71.24 0.47 15.90 16 5 O -0.53 -19.77 15.66 21.96 0.34 -19.43 16 6 C 0.10 3.63 2.33 44.17 0.10 3.74 16 7 H 0.10 4.01 7.60 -2.39 -0.02 3.99 16 8 C -0.07 -2.15 4.85 30.59 0.15 -2.00 16 9 C -0.06 -1.96 5.23 29.85 0.16 -1.80 16 10 C -0.09 -2.36 5.13 -19.87 -0.10 -2.46 16 11 C -0.13 -3.32 9.70 22.27 0.22 -3.10 16 12 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 13 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 14 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 15 C -0.13 -3.22 9.70 22.27 0.22 -3.00 16 16 N -0.64 -25.11 5.45 -477.18 -2.60 -27.71 16 17 C 0.19 8.92 1.45 44.17 0.06 8.98 16 18 H -0.02 -0.84 6.61 -2.39 -0.02 -0.85 16 19 C -0.49 -27.18 8.99 25.60 0.23 -26.95 16 20 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 21 C 0.02 1.13 5.45 84.65 0.46 1.59 16 22 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 23 Si 0.93 45.21 24.41 68.60 1.67 46.88 16 24 H -0.27 -12.24 6.83 99.48 0.68 -11.56 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.26 -12.27 6.53 99.48 0.65 -11.62 16 27 C -0.13 -5.65 5.03 30.60 0.15 -5.50 16 28 C -0.14 -5.04 9.63 71.98 0.69 -4.35 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 33 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 37 H 0.07 2.59 7.69 -2.39 -0.02 2.57 16 38 H 0.12 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 43 H 0.34 12.68 5.50 -89.69 -0.49 12.19 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.04 1.82 3.21 -2.39 -0.01 1.81 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.06 2.13 6.61 -2.39 -0.02 2.12 16 49 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -66.43 394.33 4.21 -62.22 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.34 Total: 33.81 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.67 Total: -26.19 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -2.30 Total: -85.20 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.18 Total: -31.52 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.67 Total: 46.88 kcal Total: -66.43 4.21 -62.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930692496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.577 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds