Wall clock time and date at job start Tue Mar 31 2020 12:11:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52997 * 109.47626 * 2 1
4 4 H 1.09004 * 109.46953 * 305.56172 * 3 2 1
5 5 C 1.50696 * 109.47669 * 185.55399 * 3 2 1
6 6 H 1.07998 * 120.00401 * 245.60758 * 5 3 2
7 7 C 1.37880 * 119.99471 * 65.60118 * 5 3 2
8 8 N 1.31517 * 119.99730 * 196.28991 * 7 5 3
9 9 Si 1.86799 * 120.00132 * 16.29607 * 7 5 3
10 10 H 1.48504 * 109.46899 * 179.97438 * 9 7 5
11 11 H 1.48498 * 109.47188 * 299.99341 * 9 7 5
12 12 H 1.48502 * 109.47242 * 59.99962 * 9 7 5
13 13 N 1.46500 * 109.46701 * 65.55475 * 3 2 1
14 14 C 1.34784 * 120.00434 * 274.99945 * 13 3 2
15 15 O 1.21281 * 119.99254 * 0.02562 * 14 13 3
16 16 C 1.50698 * 120.00252 * 180.02562 * 14 13 3
17 17 C 1.53003 * 109.46912 * 180.02562 * 16 14 13
18 18 H 1.09002 * 109.46942 * 304.99735 * 17 16 14
19 19 C 1.52997 * 109.47294 * 64.99968 * 17 16 14
20 20 C 1.53001 * 109.46675 * 185.00028 * 17 16 14
21 21 C 1.50704 * 109.46606 * 174.99860 * 20 17 16
22 22 C 1.38285 * 119.97286 * 90.00076 * 21 20 17
23 23 C 1.38245 * 120.11252 * 179.97438 * 22 21 20
24 24 C 1.38163 * 120.05617 * 0.02562 * 23 22 21
25 25 C 1.38710 * 119.94072 * 0.02562 * 24 23 22
26 26 O 1.35904 * 120.05273 * 180.02562 * 25 24 23
27 27 C 1.42909 * 117.00049 * 359.97438 * 26 25 24
28 28 C 1.38128 * 119.97238 * 269.72074 * 21 20 17
29 29 H 1.09005 * 109.46989 * 59.99680 * 1 2 3
30 30 H 1.08999 * 109.47616 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47120 * 300.00112 * 1 2 3
32 32 H 1.09001 * 109.47120 * 239.99888 * 2 1 3
33 33 H 1.09005 * 109.46989 * 120.00320 * 2 1 3
34 34 H 0.96997 * 119.99806 * 354.83808 * 8 7 5
35 35 H 0.97002 * 120.00186 * 95.00339 * 13 3 2
36 36 H 1.08996 * 109.47310 * 300.00226 * 16 14 13
37 37 H 1.09005 * 109.47086 * 60.00358 * 16 14 13
38 38 H 1.09005 * 109.47060 * 300.00106 * 19 17 16
39 39 H 1.09003 * 109.46963 * 59.99588 * 19 17 16
40 40 H 1.09002 * 109.47044 * 179.97438 * 19 17 16
41 41 H 1.08997 * 109.47330 * 294.99768 * 20 17 16
42 42 H 1.08999 * 109.47360 * 55.00555 * 20 17 16
43 43 H 1.08000 * 119.94465 * 359.97438 * 22 21 20
44 44 H 1.07998 * 119.96939 * 180.02562 * 23 22 21
45 45 H 1.07997 * 120.02892 * 179.97438 * 24 23 22
46 46 H 1.09000 * 109.46994 * 300.00260 * 27 26 25
47 47 H 1.08996 * 109.46984 * 59.99934 * 27 26 25
48 48 H 1.08993 * 109.47012 * 180.02562 * 27 26 25
49 49 H 1.08000 * 120.02832 * 0.02562 * 28 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.5977 1.9842 -0.8360
5 6 3.5407 1.4447 -0.1375
6 1 4.1568 1.8040 0.6735
7 6 4.1272 0.9878 -1.2987
8 7 5.4071 0.6858 -1.3142
9 14 3.1038 0.7978 -2.8499
10 1 3.9634 0.2945 -3.9513
11 1 2.0022 -0.1664 -2.6011
12 1 2.5328 2.1147 -3.2305
13 7 1.6640 2.0933 1.2574
14 6 0.4478 2.6599 1.3856
15 8 -0.3354 2.6305 0.4600
16 6 0.0611 3.3300 2.6789
17 6 -1.3593 3.8861 2.5604
18 1 -1.4204 4.5451 1.6943
19 6 -2.3473 2.7300 2.3923
20 6 -1.7059 4.6734 3.8257
21 6 -3.0554 5.3232 3.6590
22 6 -4.1994 4.6484 4.0439
23 6 -5.4387 5.2420 3.8928
24 6 -5.5372 6.5113 3.3560
25 6 -4.3913 7.1898 2.9682
26 8 -4.4855 8.4387 2.4405
27 6 -5.7969 8.9920 2.3133
28 6 -3.1480 6.5947 3.1272
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 5.9548 0.8548 -0.5317
35 1 2.2902 2.1165 1.9978
36 1 0.0999 2.6033 3.4903
37 1 0.7545 4.1448 2.8874
38 1 -2.1003 2.1691 1.4908
39 1 -2.2861 2.0710 3.2584
40 1 -3.3593 3.1263 2.3083
41 1 -1.7317 3.9961 4.6793
42 1 -0.9511 5.4415 3.9939
43 1 -4.1246 3.6560 4.4633
44 1 -6.3307 4.7131 4.1945
45 1 -6.5057 6.9745 3.2378
46 1 -6.3991 8.3544 1.6661
47 1 -6.2621 9.0539 3.2970
48 1 -5.7298 9.9896 1.8793
49 1 -2.2540 7.1229 2.8306
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000935400824.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:42
Heat of formation + Delta-G solvation = -76.170034 kcal
Electronic energy + Delta-G solvation = -26774.474732 eV
Core-core repulsion = 23086.940553 eV
Total energy + Delta-G solvation = -3687.534179 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.42241 -39.41105 -38.08788 -35.91711 -34.80261 -32.41296 -31.75154 -31.31409
-30.48625 -27.94084 -27.72182 -26.73645 -26.39262 -22.85779 -22.38274 -21.79872
-20.69904 -19.73541 -19.42186 -18.07019 -17.64617 -16.50480 -16.22308 -16.10559
-15.99341 -15.64652 -14.99783 -14.61100 -14.54758 -13.88511 -13.84593 -13.53163
-13.44316 -13.03178 -12.76472 -12.64279 -12.50286 -12.34903 -12.25922 -12.02110
-11.86500 -11.78126 -11.49296 -11.30068 -11.12956 -10.86667 -10.85487 -10.67650
-10.62836 -10.57200 -10.41191 -9.86584 -9.54068 -9.09356 -9.00063 -8.87454
-8.37004 -8.32217 -8.01041 -6.56217 -4.20113 1.13198 1.27393 3.01083
3.34300 3.40176 3.45981 3.55375 3.60885 4.07743 4.43170 4.54162
4.57451 4.77815 4.81878 4.83863 4.92950 5.07241 5.12662 5.15240
5.18162 5.20068 5.30347 5.37265 5.56043 5.61495 5.72536 5.74545
5.81613 5.88122 6.00763 6.09422 6.09921 6.12446 6.20663 6.23699
6.31085 6.42823 6.52280 6.56665 6.63726 6.74968 6.82780 7.00329
7.08763 7.17302 7.39834 7.48487 7.70019 8.25094 8.55309 8.73924
9.07487 9.49087 10.84205
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.021661 B = 0.002452 C = 0.002386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1292.356741 B =11415.333788 C =11732.427149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.139 4.139
3 C 0.247 3.753
4 H 0.040 0.960
5 C -0.616 4.616
6 H 0.060 0.940
7 C 0.038 3.962
8 N -0.900 5.900
9 Si 1.041 2.959
10 H -0.284 1.284
11 H -0.269 1.269
12 H -0.280 1.280
13 N -0.705 5.705
14 C 0.501 3.499
15 O -0.548 6.548
16 C -0.140 4.140
17 C -0.066 4.066
18 H 0.080 0.920
19 C -0.154 4.154
20 C -0.080 4.080
21 C -0.032 4.032
22 C -0.151 4.151
23 C -0.081 4.081
24 C -0.217 4.217
25 C 0.126 3.874
26 O -0.319 6.319
27 C 0.028 3.972
28 C -0.149 4.149
29 H 0.050 0.950
30 H 0.028 0.972
31 H 0.050 0.950
32 H 0.067 0.933
33 H 0.049 0.951
34 H 0.268 0.732
35 H 0.391 0.609
36 H 0.086 0.914
37 H 0.087 0.913
38 H 0.079 0.921
39 H 0.044 0.956
40 H 0.052 0.948
41 H 0.075 0.925
42 H 0.074 0.926
43 H 0.124 0.876
44 H 0.122 0.878
45 H 0.124 0.876
46 H 0.055 0.945
47 H 0.054 0.946
48 H 0.099 0.901
49 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.122 11.019 12.962 27.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.177 4.177
3 C 0.143 3.857
4 H 0.058 0.942
5 C -0.654 4.654
6 H 0.079 0.921
7 C -0.169 4.169
8 N -0.533 5.533
9 Si 0.869 3.131
10 H -0.210 1.210
11 H -0.195 1.195
12 H -0.207 1.207
13 N -0.352 5.352
14 C 0.286 3.714
15 O -0.427 6.427
16 C -0.180 4.180
17 C -0.085 4.085
18 H 0.098 0.902
19 C -0.211 4.211
20 C -0.117 4.117
21 C -0.032 4.032
22 C -0.169 4.169
23 C -0.099 4.099
24 C -0.235 4.235
25 C 0.082 3.918
26 O -0.232 6.232
27 C -0.067 4.067
28 C -0.167 4.167
29 H 0.069 0.931
30 H 0.047 0.953
31 H 0.069 0.931
32 H 0.086 0.914
33 H 0.068 0.932
34 H 0.078 0.922
35 H 0.224 0.776
36 H 0.105 0.895
37 H 0.105 0.895
38 H 0.098 0.902
39 H 0.063 0.937
40 H 0.071 0.929
41 H 0.094 0.906
42 H 0.093 0.907
43 H 0.142 0.858
44 H 0.140 0.860
45 H 0.142 0.858
46 H 0.073 0.927
47 H 0.072 0.928
48 H 0.117 0.883
49 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -21.427 10.594 10.636 26.162
hybrid contribution 0.024 0.566 2.093 2.169
sum -21.402 11.160 12.729 27.288
Atomic orbital electron populations
1.21888 0.97388 0.98743 1.02007 1.22350 0.93811 0.99890 1.01697
1.19009 0.95647 0.88503 0.82528 0.94177 1.22110 0.89861 1.49336
1.04045 0.92147 1.25685 0.97549 0.92398 1.01222 1.70879 1.07088
1.41058 1.34280 0.84103 0.75461 0.77704 0.75843 1.21007 1.19512
1.20651 1.46282 1.14823 1.56185 1.17939 1.20453 0.82420 0.79101
0.89403 1.90623 1.50622 1.60020 1.41475 1.21767 0.97973 1.01207
0.97051 1.20794 0.93278 0.97350 0.97043 0.90172 1.22026 0.98506
0.97826 1.02775 1.20773 0.92969 0.99233 0.98764 1.19668 0.95672
0.92625 0.95243 1.20989 0.91886 1.00415 1.03590 1.20903 0.97692
0.94147 0.97164 1.21176 0.97421 0.97558 1.07373 1.19010 0.94240
0.84433 0.94163 1.86082 1.30671 1.28402 1.78060 1.23036 0.83100
0.99184 1.01362 1.20334 0.95659 0.95809 1.04940 0.93078 0.95253
0.93114 0.91446 0.93219 0.92170 0.77609 0.89537 0.89467 0.90181
0.93715 0.92867 0.90631 0.90714 0.85828 0.85957 0.85803 0.92675
0.92775 0.88300 0.85223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.88 8.53 37.15 0.32 -2.56 16
2 C -0.14 -3.10 5.27 -26.74 -0.14 -3.24 16
3 C 0.25 5.86 1.82 -69.09 -0.13 5.73 16
4 H 0.04 1.05 6.26 -51.93 -0.32 0.72 16
5 C -0.62 -16.64 9.01 -34.44 -0.31 -16.95 16
6 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16
7 C 0.04 1.07 5.32 -17.82 -0.09 0.97 16
8 N -0.90 -26.89 13.70 55.43 0.76 -26.13 16
9 Si 1.04 25.31 26.27 -169.99 -4.47 20.84 16
10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
11 H -0.27 -6.11 5.67 56.52 0.32 -5.79 16
12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
13 N -0.70 -13.89 5.03 -54.93 -0.28 -14.17 16
14 C 0.50 9.03 6.14 -10.98 -0.07 8.96 16
15 O -0.55 -11.48 11.11 5.56 0.06 -11.42 16
16 C -0.14 -1.80 5.17 -27.88 -0.14 -1.94 16
17 C -0.07 -0.82 2.03 -90.62 -0.18 -1.00 16
18 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16
19 C -0.15 -2.00 8.50 37.16 0.32 -1.69 16
20 C -0.08 -0.79 4.84 -27.88 -0.13 -0.93 16
21 C -0.03 -0.34 4.71 -104.64 -0.49 -0.84 16
22 C -0.15 -1.49 7.96 -39.56 -0.31 -1.81 16
23 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16
24 C -0.22 -2.08 9.04 -39.43 -0.36 -2.44 16
25 C 0.13 1.42 6.69 -39.22 -0.26 1.16 16
26 O -0.32 -3.43 10.50 -19.44 -0.20 -3.63 16
27 C 0.03 0.18 9.81 101.05 0.99 1.18 16
28 C -0.15 -1.71 9.64 -39.43 -0.38 -2.09 16
29 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16
30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16
32 H 0.07 1.58 4.74 -51.93 -0.25 1.34 16
33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
34 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16
35 H 0.39 6.91 8.53 -40.82 -0.35 6.56 16
36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16
37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
38 H 0.08 1.28 5.95 -51.93 -0.31 0.97 16
39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.05 0.66 6.26 -51.93 -0.33 0.33 16
41 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16
42 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16
43 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16
44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
45 H 0.12 0.91 6.30 -52.49 -0.33 0.58 16
46 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16
47 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16
48 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16
49 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16
LS Contribution 381.68 15.07 5.75 5.75
Total: -1.00 -31.90 381.68 -8.24 -40.14
By element:
Atomic # 1 Polarization: 15.33 SS G_CDS: -8.09 Total: 7.24 kcal
Atomic # 6 Polarization: -16.85 SS G_CDS: -1.78 Total: -18.63 kcal
Atomic # 7 Polarization: -40.78 SS G_CDS: 0.48 Total: -40.30 kcal
Atomic # 8 Polarization: -14.91 SS G_CDS: -0.14 Total: -15.05 kcal
Atomic # 14 Polarization: 25.31 SS G_CDS: -4.47 Total: 20.84 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -31.90 -8.24 -40.14 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000935400824.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.028 kcal
(2) G-P(sol) polarization free energy of solvation -31.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.926 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.170 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds