Wall clock time and date at job start Tue Mar 31 2020 12:11:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.47013 * 2 1
4 4 H 1.08995 * 109.47300 * 305.69965 * 3 2 1
5 5 C 1.50699 * 109.47329 * 185.69178 * 3 2 1
6 6 H 1.07996 * 120.00195 * 275.01160 * 5 3 2
7 7 C 1.37881 * 119.99794 * 95.00281 * 5 3 2
8 8 N 1.31511 * 120.00091 * 184.83340 * 7 5 3
9 9 Si 1.86799 * 119.99908 * 4.83292 * 7 5 3
10 10 H 1.48496 * 109.47161 * 84.86031 * 9 7 5
11 11 H 1.48505 * 109.47094 * 204.85993 * 9 7 5
12 12 H 1.48496 * 109.47198 * 324.86107 * 9 7 5
13 13 N 1.46507 * 109.47072 * 65.69643 * 3 2 1
14 14 C 1.34781 * 119.99541 * 275.27061 * 13 3 2
15 15 O 1.21281 * 120.00089 * 359.72840 * 14 13 3
16 16 C 1.50703 * 119.99642 * 179.72418 * 14 13 3
17 17 C 1.52997 * 109.46860 * 180.02562 * 16 14 13
18 18 H 1.09001 * 109.47595 * 55.00422 * 17 16 14
19 19 C 1.52999 * 109.47429 * 295.00028 * 17 16 14
20 20 C 1.53002 * 109.47175 * 175.00282 * 17 16 14
21 21 C 1.50701 * 109.47440 * 185.00222 * 20 17 16
22 22 C 1.38284 * 119.97389 * 89.99678 * 21 20 17
23 23 C 1.38238 * 120.11530 * 180.02562 * 22 21 20
24 24 C 1.38171 * 120.05446 * 359.95756 * 23 22 21
25 25 C 1.38713 * 119.94149 * 0.02562 * 24 23 22
26 26 O 1.35902 * 120.05378 * 180.02562 * 25 24 23
27 27 C 1.42901 * 117.00120 * 359.97438 * 26 25 24
28 28 C 1.38121 * 119.97142 * 269.72192 * 21 20 17
29 29 H 1.08999 * 109.47136 * 60.00202 * 1 2 3
30 30 H 1.09000 * 109.46958 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.46794 * 299.99895 * 1 2 3
32 32 H 1.08992 * 109.47206 * 239.99913 * 2 1 3
33 33 H 1.09004 * 109.46434 * 119.99756 * 2 1 3
34 34 H 0.96999 * 120.00285 * 179.97438 * 8 7 5
35 35 H 0.96992 * 120.00451 * 95.00319 * 13 3 2
36 36 H 1.08997 * 109.47442 * 300.00654 * 16 14 13
37 37 H 1.09000 * 109.47054 * 60.00715 * 16 14 13
38 38 H 1.08996 * 109.46864 * 60.00209 * 19 17 16
39 39 H 1.09002 * 109.47319 * 179.97438 * 19 17 16
40 40 H 1.09001 * 109.47080 * 300.00168 * 19 17 16
41 41 H 1.09000 * 109.47255 * 305.00077 * 20 17 16
42 42 H 1.08997 * 109.47286 * 64.99323 * 20 17 16
43 43 H 1.08005 * 119.94624 * 359.97438 * 22 21 20
44 44 H 1.07995 * 119.98002 * 179.97438 * 23 22 21
45 45 H 1.08003 * 120.03274 * 179.97438 * 24 23 22
46 46 H 1.09000 * 109.46499 * 60.00448 * 27 26 25
47 47 H 1.09001 * 109.46794 * 180.02562 * 27 26 25
48 48 H 1.08994 * 109.47226 * 300.00759 * 27 26 25
49 49 H 1.08000 * 120.02606 * 0.02562 * 28 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5958 1.9849 -0.8345
5 6 3.5404 1.4449 -0.1409
6 1 4.1650 1.3333 0.7330
7 6 4.1157 1.5894 -1.3856
8 7 5.4204 1.4965 -1.5218
9 14 3.0418 1.9171 -2.8785
10 1 2.7753 3.3740 -2.9863
11 1 3.7401 1.4497 -4.1029
12 1 1.7562 1.1882 -2.7331
13 7 1.6668 2.0924 1.2589
14 6 0.4488 2.6540 1.3920
15 8 -0.3363 2.6256 0.4681
16 6 0.0626 3.3170 2.6891
17 6 -1.3600 3.8684 2.5760
18 1 -2.0375 3.0680 2.2786
19 6 -1.3938 4.9814 1.5267
20 6 -1.7982 4.4306 3.9299
21 6 -3.2402 4.8615 3.8521
22 6 -4.2468 3.9645 4.1590
23 6 -5.5706 4.3564 4.0881
24 6 -5.8910 5.6465 3.7110
25 6 -4.8831 6.5483 3.4029
26 8 -5.1956 7.8179 3.0323
27 6 -6.5832 8.1557 2.9805
28 6 -3.5551 6.1538 3.4797
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 5.8251 1.5978 -2.3975
35 1 2.2947 2.1151 1.9978
36 1 0.1059 2.5871 3.4973
37 1 0.7534 4.1335 2.8995
38 1 -1.0817 4.5809 0.5622
39 1 -2.4075 5.3739 1.4459
40 1 -0.7165 5.7819 1.8242
41 1 -1.6896 3.6618 4.6949
42 1 -1.1760 5.2881 4.1858
43 1 -3.9985 2.9555 4.4538
44 1 -6.3550 3.6540 4.3279
45 1 -6.9254 5.9523 3.6553
46 1 -7.0268 8.0210 3.9670
47 1 -6.6927 9.1952 2.6713
48 1 -7.0882 7.5085 2.2635
49 1 -2.7684 6.8552 3.2440
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000935400826.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:48
Heat of formation + Delta-G solvation = -77.033610 kcal
Electronic energy + Delta-G solvation = -26784.276501 eV
Core-core repulsion = 23096.704874 eV
Total energy + Delta-G solvation = -3687.571627 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.94 seconds
Orbital eigenvalues (eV)
-40.41671 -39.36253 -38.05865 -35.90618 -34.74643 -32.33793 -31.75338 -31.19206
-30.56068 -28.14662 -27.59064 -26.81762 -26.48852 -22.82508 -22.69677 -21.90806
-20.61974 -19.65555 -19.43525 -17.96504 -17.21500 -16.47758 -16.19469 -16.00946
-15.91732 -15.50621 -15.37007 -14.56549 -14.26112 -14.07788 -13.82422 -13.71654
-13.46604 -13.07987 -12.76771 -12.63888 -12.47412 -12.25934 -12.09895 -11.90765
-11.85135 -11.69869 -11.50446 -11.36190 -11.14243 -10.94718 -10.84148 -10.75167
-10.57062 -10.55817 -10.51917 -9.94258 -9.82540 -9.18738 -8.99397 -8.88032
-8.67473 -8.36870 -7.91735 -6.22318 -4.25531 1.14518 1.28519 3.01531
3.27180 3.35239 3.39529 3.43043 3.56859 4.09812 4.33962 4.55400
4.58762 4.78848 4.82028 4.84920 4.95426 5.07277 5.12094 5.14743
5.20927 5.26525 5.30533 5.37307 5.58526 5.67792 5.75093 5.81355
5.85444 5.90331 6.04831 6.08430 6.10885 6.11431 6.23822 6.26001
6.30861 6.44515 6.52662 6.61552 6.67099 6.72174 6.81398 7.02114
7.04270 7.18030 7.31755 7.41068 7.63254 8.18053 8.63821 8.79283
9.09218 9.40625 10.89479
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.021825 B = 0.002509 C = 0.002430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1282.649961 B =11156.475136 C =11522.016694
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.125 4.125
3 C 0.237 3.763
4 H 0.050 0.950
5 C -0.530 4.530
6 H 0.078 0.922
7 C 0.081 3.919
8 N -0.890 5.890
9 Si 0.873 3.127
10 H -0.274 1.274
11 H -0.287 1.287
12 H -0.259 1.259
13 N -0.706 5.706
14 C 0.500 3.500
15 O -0.551 6.551
16 C -0.140 4.140
17 C -0.065 4.065
18 H 0.079 0.921
19 C -0.155 4.155
20 C -0.080 4.080
21 C -0.032 4.032
22 C -0.154 4.154
23 C -0.080 4.080
24 C -0.217 4.217
25 C 0.125 3.875
26 O -0.319 6.319
27 C 0.028 3.972
28 C -0.145 4.145
29 H 0.049 0.951
30 H 0.028 0.972
31 H 0.050 0.950
32 H 0.059 0.941
33 H 0.050 0.950
34 H 0.267 0.733
35 H 0.392 0.608
36 H 0.086 0.914
37 H 0.088 0.912
38 H 0.079 0.921
39 H 0.051 0.949
40 H 0.045 0.955
41 H 0.075 0.925
42 H 0.075 0.925
43 H 0.123 0.877
44 H 0.123 0.877
45 H 0.124 0.876
46 H 0.054 0.946
47 H 0.098 0.902
48 H 0.054 0.946
49 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.121 8.702 13.422 26.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.164 4.164
3 C 0.134 3.866
4 H 0.068 0.932
5 C -0.568 4.568
6 H 0.096 0.904
7 C -0.124 4.124
8 N -0.526 5.526
9 Si 0.700 3.300
10 H -0.199 1.199
11 H -0.213 1.213
12 H -0.183 1.183
13 N -0.354 5.354
14 C 0.285 3.715
15 O -0.431 6.431
16 C -0.181 4.181
17 C -0.084 4.084
18 H 0.097 0.903
19 C -0.212 4.212
20 C -0.118 4.118
21 C -0.032 4.032
22 C -0.172 4.172
23 C -0.098 4.098
24 C -0.236 4.236
25 C 0.080 3.920
26 O -0.232 6.232
27 C -0.067 4.067
28 C -0.164 4.164
29 H 0.069 0.931
30 H 0.047 0.953
31 H 0.069 0.931
32 H 0.077 0.923
33 H 0.069 0.931
34 H 0.077 0.923
35 H 0.225 0.775
36 H 0.104 0.896
37 H 0.107 0.893
38 H 0.098 0.902
39 H 0.070 0.930
40 H 0.064 0.936
41 H 0.094 0.906
42 H 0.093 0.907
43 H 0.141 0.859
44 H 0.141 0.859
45 H 0.142 0.858
46 H 0.072 0.928
47 H 0.117 0.883
48 H 0.073 0.927
49 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -21.367 8.839 12.549 26.308
hybrid contribution -0.402 0.103 -0.444 0.607
sum -21.768 8.942 12.105 26.464
Atomic orbital electron populations
1.21899 0.97404 0.98696 1.02086 1.22068 0.93671 0.99575 1.01072
1.19130 0.95356 0.89032 0.83081 0.93209 1.21029 0.88815 1.51573
0.95386 0.90429 1.24944 0.94861 0.93738 0.98817 1.69882 1.09776
1.48512 1.24460 0.86900 0.81276 0.79611 0.82196 1.19907 1.21296
1.18350 1.46618 1.14526 1.56243 1.18053 1.20487 0.82539 0.79035
0.89406 1.90620 1.50896 1.59746 1.41791 1.21779 0.98097 1.01206
0.96972 1.20785 0.95208 0.98655 0.93716 0.90283 1.22021 1.01173
0.97357 1.00669 1.20780 0.91407 1.01412 0.98163 1.19674 0.95868
0.92287 0.95369 1.20986 0.92348 0.99848 1.04001 1.20898 0.96497
0.95096 0.97314 1.21181 0.98553 0.95220 1.08604 1.19022 0.93920
0.83655 0.95398 1.86076 1.26865 1.26899 1.83385 1.23032 0.80376
1.01891 1.01381 1.20340 0.93635 0.96795 1.05635 0.93149 0.95283
0.93060 0.92265 0.93134 0.92283 0.77514 0.89569 0.89342 0.90243
0.92956 0.93570 0.90650 0.90663 0.85852 0.85948 0.85819 0.92777
0.88321 0.92693 0.85186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.85 8.53 37.16 0.32 -2.54 16
2 C -0.12 -2.70 5.59 -26.73 -0.15 -2.85 16
3 C 0.24 5.53 1.89 -69.08 -0.13 5.40 16
4 H 0.05 1.28 4.74 -51.93 -0.25 1.04 16
5 C -0.53 -14.15 9.05 -34.44 -0.31 -14.46 16
6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16
7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16
8 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16
9 Si 0.87 21.68 26.99 -169.99 -4.59 17.09 16
10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16
11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
12 H -0.26 -6.34 6.82 56.52 0.39 -5.95 16
13 N -0.71 -13.71 5.03 -54.93 -0.28 -13.99 16
14 C 0.50 8.98 6.14 -10.98 -0.07 8.91 16
15 O -0.55 -11.58 11.09 5.56 0.06 -11.52 16
16 C -0.14 -1.80 5.17 -27.88 -0.14 -1.95 16
17 C -0.06 -0.81 2.03 -90.62 -0.18 -0.99 16
18 H 0.08 1.12 7.96 -51.93 -0.41 0.71 16
19 C -0.16 -2.16 8.51 37.16 0.32 -1.85 16
20 C -0.08 -0.80 4.84 -27.88 -0.13 -0.93 16
21 C -0.03 -0.34 4.70 -104.65 -0.49 -0.84 16
22 C -0.15 -1.56 9.70 -39.56 -0.38 -1.94 16
23 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16
24 C -0.22 -2.10 9.04 -39.43 -0.36 -2.46 16
25 C 0.12 1.39 6.69 -39.22 -0.26 1.13 16
26 O -0.32 -3.39 10.50 -19.43 -0.20 -3.60 16
27 C 0.03 0.18 9.81 101.05 0.99 1.17 16
28 C -0.15 -1.65 7.92 -39.43 -0.31 -1.97 16
29 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16
30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.05 1.00 5.61 -51.93 -0.29 0.71 16
32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16
34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16
35 H 0.39 6.74 8.59 -40.82 -0.35 6.39 16
36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
38 H 0.08 1.36 5.95 -51.93 -0.31 1.05 16
39 H 0.05 0.71 6.28 -51.93 -0.33 0.38 16
40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16
42 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16
43 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16
44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
45 H 0.12 0.92 6.30 -52.48 -0.33 0.59 16
46 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16
47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16
48 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16
49 H 0.13 1.42 8.05 -52.49 -0.42 1.00 16
LS Contribution 386.04 15.07 5.82 5.82
Total: -1.00 -31.78 386.04 -8.33 -40.11
By element:
Atomic # 1 Polarization: 14.80 SS G_CDS: -8.11 Total: 6.69 kcal
Atomic # 6 Polarization: -13.35 SS G_CDS: -1.80 Total: -15.15 kcal
Atomic # 7 Polarization: -39.93 SS G_CDS: 0.50 Total: -39.44 kcal
Atomic # 8 Polarization: -14.98 SS G_CDS: -0.14 Total: -15.12 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -31.78 -8.33 -40.11 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000935400826.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.925 kcal
(2) G-P(sol) polarization free energy of solvation -31.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.706 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.94 seconds