Wall clock time and date at job start Tue Mar 31 2020 12:11:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.47013 * 2 1
4 4 H 1.08995 * 109.47300 * 305.69965 * 3 2 1
5 5 C 1.50699 * 109.47329 * 185.69178 * 3 2 1
6 6 H 1.07996 * 120.00195 * 275.01160 * 5 3 2
7 7 C 1.37881 * 119.99794 * 95.00281 * 5 3 2
8 8 N 1.31511 * 120.00091 * 184.83340 * 7 5 3
9 9 Si 1.86799 * 119.99908 * 4.83292 * 7 5 3
10 10 H 1.48496 * 109.47161 * 84.86031 * 9 7 5
11 11 H 1.48505 * 109.47094 * 204.85993 * 9 7 5
12 12 H 1.48496 * 109.47198 * 324.86107 * 9 7 5
13 13 N 1.46507 * 109.47072 * 65.69643 * 3 2 1
14 14 C 1.34781 * 119.99541 * 275.27061 * 13 3 2
15 15 O 1.21281 * 120.00089 * 359.72840 * 14 13 3
16 16 C 1.50703 * 119.99642 * 179.72418 * 14 13 3
17 17 C 1.52997 * 109.46860 * 180.02562 * 16 14 13
18 18 H 1.09001 * 109.47595 * 55.00422 * 17 16 14
19 19 C 1.52999 * 109.47429 * 295.00028 * 17 16 14
20 20 C 1.53002 * 109.47175 * 175.00282 * 17 16 14
21 21 C 1.50701 * 109.47440 * 185.00222 * 20 17 16
22 22 C 1.38284 * 119.97389 * 89.99678 * 21 20 17
23 23 C 1.38238 * 120.11530 * 180.02562 * 22 21 20
24 24 C 1.38171 * 120.05446 * 359.95756 * 23 22 21
25 25 C 1.38713 * 119.94149 * 0.02562 * 24 23 22
26 26 O 1.35902 * 120.05378 * 180.02562 * 25 24 23
27 27 C 1.42901 * 117.00120 * 359.97438 * 26 25 24
28 28 C 1.38121 * 119.97142 * 269.72192 * 21 20 17
29 29 H 1.08999 * 109.47136 * 60.00202 * 1 2 3
30 30 H 1.09000 * 109.46958 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.46794 * 299.99895 * 1 2 3
32 32 H 1.08992 * 109.47206 * 239.99913 * 2 1 3
33 33 H 1.09004 * 109.46434 * 119.99756 * 2 1 3
34 34 H 0.96999 * 120.00285 * 179.97438 * 8 7 5
35 35 H 0.96992 * 120.00451 * 95.00319 * 13 3 2
36 36 H 1.08997 * 109.47442 * 300.00654 * 16 14 13
37 37 H 1.09000 * 109.47054 * 60.00715 * 16 14 13
38 38 H 1.08996 * 109.46864 * 60.00209 * 19 17 16
39 39 H 1.09002 * 109.47319 * 179.97438 * 19 17 16
40 40 H 1.09001 * 109.47080 * 300.00168 * 19 17 16
41 41 H 1.09000 * 109.47255 * 305.00077 * 20 17 16
42 42 H 1.08997 * 109.47286 * 64.99323 * 20 17 16
43 43 H 1.08005 * 119.94624 * 359.97438 * 22 21 20
44 44 H 1.07995 * 119.98002 * 179.97438 * 23 22 21
45 45 H 1.08003 * 120.03274 * 179.97438 * 24 23 22
46 46 H 1.09000 * 109.46499 * 60.00448 * 27 26 25
47 47 H 1.09001 * 109.46794 * 180.02562 * 27 26 25
48 48 H 1.08994 * 109.47226 * 300.00759 * 27 26 25
49 49 H 1.08000 * 120.02606 * 0.02562 * 28 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5958 1.9849 -0.8345
5 6 3.5404 1.4449 -0.1409
6 1 4.1650 1.3333 0.7330
7 6 4.1157 1.5894 -1.3856
8 7 5.4204 1.4965 -1.5218
9 14 3.0418 1.9171 -2.8785
10 1 2.7753 3.3740 -2.9863
11 1 3.7401 1.4497 -4.1029
12 1 1.7562 1.1882 -2.7331
13 7 1.6668 2.0924 1.2589
14 6 0.4488 2.6540 1.3920
15 8 -0.3363 2.6256 0.4681
16 6 0.0626 3.3170 2.6891
17 6 -1.3600 3.8684 2.5760
18 1 -2.0375 3.0680 2.2786
19 6 -1.3938 4.9814 1.5267
20 6 -1.7982 4.4306 3.9299
21 6 -3.2402 4.8615 3.8521
22 6 -4.2468 3.9645 4.1590
23 6 -5.5706 4.3564 4.0881
24 6 -5.8910 5.6465 3.7110
25 6 -4.8831 6.5483 3.4029
26 8 -5.1956 7.8179 3.0323
27 6 -6.5832 8.1557 2.9805
28 6 -3.5551 6.1538 3.4797
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 5.8251 1.5978 -2.3975
35 1 2.2947 2.1151 1.9978
36 1 0.1059 2.5871 3.4973
37 1 0.7534 4.1335 2.8995
38 1 -1.0817 4.5809 0.5622
39 1 -2.4075 5.3739 1.4459
40 1 -0.7165 5.7819 1.8242
41 1 -1.6896 3.6618 4.6949
42 1 -1.1760 5.2881 4.1858
43 1 -3.9985 2.9555 4.4538
44 1 -6.3550 3.6540 4.3279
45 1 -6.9254 5.9523 3.6553
46 1 -7.0268 8.0210 3.9670
47 1 -6.6927 9.1952 2.6713
48 1 -7.0882 7.5085 2.2635
49 1 -2.7684 6.8552 3.2440
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000935400826.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:47
Heat of formation + Delta-G solvation = -95.883606 kcal
Electronic energy + Delta-G solvation = -26785.093898 eV
Core-core repulsion = 23096.704874 eV
Total energy + Delta-G solvation = -3688.389024 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.18829 -40.74570 -38.87333 -37.25921 -36.08992 -34.35871 -33.20673 -32.21086
-31.30186 -29.73915 -28.35161 -28.08401 -27.36077 -24.67270 -23.43156 -22.97015
-21.83067 -21.15928 -20.71924 -19.18714 -18.60886 -17.51376 -17.23846 -17.16350
-16.92826 -16.66390 -16.56903 -16.03748 -15.51542 -15.09344 -14.91572 -14.79481
-14.76511 -14.48163 -13.99245 -13.86848 -13.75487 -13.61743 -13.41223 -13.14649
-12.91861 -12.79557 -12.70593 -12.52327 -12.41764 -12.32313 -12.17758 -11.92433
-11.87045 -11.74239 -11.63122 -11.53901 -11.46409 -11.17730 -10.83042 -10.42228
-9.69041 -9.56760 -9.11068 -8.38649 -6.43206 0.39834 0.53278 1.27676
1.32262 1.43171 1.97822 2.26611 2.39217 2.60299 2.84603 3.06442
3.77072 3.90995 3.99511 4.04477 4.13153 4.30051 4.32246 4.34582
4.37424 4.44507 4.45616 4.50044 4.52274 4.60464 4.63095 4.71264
4.75587 4.81779 4.85517 4.88651 4.98177 5.04779 5.13065 5.15471
5.22972 5.29879 5.32542 5.37398 5.44418 5.49018 5.53386 5.55509
5.59072 5.75024 5.89071 5.89633 6.17536 6.48890 6.62639 7.06129
7.23376 7.65545 8.76523
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.021825 B = 0.002509 C = 0.002430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1282.649961 B =11156.475136 C =11522.016694
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.122 4.122
3 C 0.241 3.759
4 H 0.027 0.973
5 C -0.524 4.524
6 H 0.056 0.944
7 C 0.032 3.968
8 N -0.931 5.931
9 Si 0.925 3.075
10 H -0.277 1.277
11 H -0.279 1.279
12 H -0.257 1.257
13 N -0.709 5.709
14 C 0.496 3.504
15 O -0.582 6.582
16 C -0.130 4.130
17 C -0.058 4.058
18 H 0.062 0.938
19 C -0.150 4.150
20 C -0.071 4.071
21 C -0.042 4.042
22 C -0.164 4.164
23 C -0.084 4.084
24 C -0.221 4.221
25 C 0.108 3.892
26 O -0.341 6.341
27 C 0.020 3.980
28 C -0.165 4.165
29 H 0.030 0.970
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.045 0.955
33 H 0.062 0.938
34 H 0.269 0.731
35 H 0.404 0.596
36 H 0.119 0.881
37 H 0.108 0.892
38 H 0.043 0.957
39 H 0.050 0.950
40 H 0.056 0.944
41 H 0.097 0.903
42 H 0.085 0.915
43 H 0.138 0.862
44 H 0.146 0.854
45 H 0.144 0.856
46 H 0.066 0.934
47 H 0.116 0.884
48 H 0.061 0.939
49 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.155 8.617 15.177 28.996
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.162 4.162
3 C 0.137 3.863
4 H 0.045 0.955
5 C -0.562 4.562
6 H 0.075 0.925
7 C -0.168 4.168
8 N -0.570 5.570
9 Si 0.750 3.250
10 H -0.202 1.202
11 H -0.205 1.205
12 H -0.181 1.181
13 N -0.358 5.358
14 C 0.284 3.716
15 O -0.463 6.463
16 C -0.169 4.169
17 C -0.077 4.077
18 H 0.080 0.920
19 C -0.207 4.207
20 C -0.108 4.108
21 C -0.042 4.042
22 C -0.182 4.182
23 C -0.102 4.102
24 C -0.239 4.239
25 C 0.063 3.937
26 O -0.255 6.255
27 C -0.074 4.074
28 C -0.183 4.183
29 H 0.049 0.951
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.064 0.936
33 H 0.080 0.920
34 H 0.079 0.921
35 H 0.239 0.761
36 H 0.137 0.863
37 H 0.126 0.874
38 H 0.062 0.938
39 H 0.069 0.931
40 H 0.075 0.925
41 H 0.115 0.885
42 H 0.104 0.896
43 H 0.156 0.844
44 H 0.164 0.836
45 H 0.162 0.838
46 H 0.085 0.915
47 H 0.134 0.866
48 H 0.079 0.921
49 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -23.417 8.763 14.330 28.818
hybrid contribution 0.156 0.174 -0.935 0.964
sum -23.261 8.937 13.395 28.291
Atomic orbital electron populations
1.21756 0.95739 1.00108 1.01255 1.21974 0.95050 0.98140 1.00994
1.18838 0.92946 0.90213 0.84302 0.95545 1.21260 0.90546 1.49956
0.94435 0.92546 1.25584 0.95690 0.94166 1.01339 1.69977 1.11186
1.50688 1.25163 0.86085 0.79956 0.79135 0.79827 1.20226 1.20489
1.18082 1.46391 1.15722 1.56678 1.17036 1.21355 0.81307 0.78104
0.90853 1.90622 1.51646 1.60600 1.43465 1.21797 0.98427 1.02137
0.94561 1.20694 0.94703 0.97524 0.94748 0.91982 1.21944 1.01202
0.98139 0.99461 1.20711 0.91042 1.02305 0.96776 1.19807 0.96529
0.92213 0.95666 1.21264 0.92619 1.00431 1.03870 1.21248 0.97026
0.95419 0.96532 1.21465 0.99336 0.95182 1.07961 1.19255 0.94329
0.84239 0.95860 1.86042 1.29204 1.26826 1.83447 1.23300 0.78685
1.03055 1.02406 1.20477 0.93971 0.97307 1.06568 0.95127 0.92684
0.92710 0.93608 0.91959 0.92143 0.76144 0.86281 0.87358 0.93823
0.93115 0.92512 0.88504 0.89645 0.84423 0.83594 0.83827 0.91531
0.86618 0.92079 0.85650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.01 8.53 71.98 0.61 -4.40 16
2 C -0.12 -5.18 5.59 30.59 0.17 -5.01 16
3 C 0.24 11.20 1.89 44.24 0.08 11.29 16
4 H 0.03 1.37 4.74 -2.39 -0.01 1.36 16
5 C -0.52 -28.20 9.05 25.60 0.23 -27.97 16
6 H 0.06 3.22 8.06 -2.91 -0.02 3.20 16
7 C 0.03 1.83 5.47 84.66 0.46 2.29 16
8 N -0.93 -55.82 13.96 21.45 0.30 -55.53 16
9 Si 0.92 45.35 26.99 68.60 1.85 47.20 16
10 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16
11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16
12 H -0.26 -12.36 6.82 99.48 0.68 -11.68 16
13 N -0.71 -26.71 5.03 -446.09 -2.24 -28.95 16
14 C 0.50 17.10 6.14 87.66 0.54 17.64 16
15 O -0.58 -24.26 11.09 -3.03 -0.03 -24.29 16
16 C -0.13 -2.96 5.17 29.85 0.15 -2.80 16
17 C -0.06 -1.33 2.03 -10.79 -0.02 -1.35 16
18 H 0.06 1.66 7.96 -2.39 -0.02 1.65 16
19 C -0.15 -4.11 8.51 71.98 0.61 -3.50 16
20 C -0.07 -1.22 4.84 29.85 0.14 -1.08 16
21 C -0.04 -0.84 4.70 -19.88 -0.09 -0.93 16
22 C -0.16 -2.97 9.70 22.28 0.22 -2.75 16
23 C -0.08 -1.40 10.04 22.25 0.22 -1.18 16
24 C -0.22 -3.91 9.04 22.37 0.20 -3.71 16
25 C 0.11 2.33 6.69 22.51 0.15 2.48 16
26 O -0.34 -7.07 10.50 -92.44 -0.97 -8.04 16
27 C 0.02 0.23 9.81 113.37 1.11 1.34 16
28 C -0.16 -3.63 7.92 22.36 0.18 -3.46 16
29 H 0.03 1.27 7.88 -2.39 -0.02 1.25 16
30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
31 H 0.05 2.04 5.61 -2.39 -0.01 2.02 16
32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
33 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16
34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16
35 H 0.40 13.26 8.59 -92.71 -0.80 12.47 16
36 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16
37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16
38 H 0.04 1.51 5.95 -2.39 -0.01 1.49 16
39 H 0.05 1.37 6.28 -2.39 -0.01 1.36 16
40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
41 H 0.10 1.27 8.08 -2.39 -0.02 1.25 16
42 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16
43 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16
44 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16
45 H 0.14 1.82 6.30 -2.91 -0.02 1.80 16
46 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16
47 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16
48 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16
49 H 0.13 2.73 8.05 -2.91 -0.02 2.71 16
Total: -1.00 -70.15 386.04 3.99 -66.16
By element:
Atomic # 1 Polarization: 26.45 SS G_CDS: 0.11 Total: 26.56 kcal
Atomic # 6 Polarization: -28.08 SS G_CDS: 4.98 Total: -23.10 kcal
Atomic # 7 Polarization: -82.53 SS G_CDS: -1.95 Total: -84.48 kcal
Atomic # 8 Polarization: -31.33 SS G_CDS: -1.00 Total: -32.33 kcal
Atomic # 14 Polarization: 45.35 SS G_CDS: 1.85 Total: 47.20 kcal
Total: -70.15 3.99 -66.16 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000935400826.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.727 kcal
(2) G-P(sol) polarization free energy of solvation -70.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.875 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds