Wall clock time and date at job start Tue Mar 31 2020 12:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.46628 * 304.99604 * 17 16 14 19 19 C 1.53000 * 109.47372 * 64.99844 * 17 16 14 20 20 C 1.53003 * 109.47059 * 184.99892 * 17 16 14 21 21 C 1.50700 * 109.47347 * 174.99778 * 20 17 16 22 22 C 1.38285 * 119.96958 * 89.99793 * 21 20 17 23 23 C 1.38241 * 120.10734 * 179.97438 * 22 21 20 24 24 C 1.38166 * 120.05824 * 359.97438 * 23 22 21 25 25 C 1.38707 * 119.94435 * 0.02626 * 24 23 22 26 26 O 1.35896 * 120.05727 * 180.02562 * 25 24 23 27 27 C 1.42901 * 116.99836 * 0.02562 * 26 25 24 28 28 C 1.38120 * 119.97074 * 269.72671 * 21 20 17 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 37 37 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 38 38 H 1.08997 * 109.46934 * 180.02562 * 19 17 16 39 39 H 1.09000 * 109.46875 * 299.99947 * 19 17 16 40 40 H 1.08999 * 109.46956 * 60.00044 * 19 17 16 41 41 H 1.08997 * 109.46827 * 295.00166 * 20 17 16 42 42 H 1.09004 * 109.46772 * 54.99074 * 20 17 16 43 43 H 1.08005 * 119.94510 * 359.97438 * 22 21 20 44 44 H 1.08007 * 119.96803 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.02531 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.46675 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.46443 * 299.98925 * 27 26 25 48 48 H 1.08995 * 109.47425 * 59.99290 * 27 26 25 49 49 H 1.08007 * 120.02818 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 1 -2.0597 3.0952 -2.2206 19 6 -1.3986 5.0008 -1.4639 20 6 -1.8343 4.4677 -3.8657 21 6 -3.2733 4.9044 -3.7676 22 6 -3.5783 6.1954 -3.3770 23 6 -4.8974 6.5992 -3.2866 24 6 -5.9144 5.7136 -3.5870 25 6 -5.6111 4.4181 -3.9790 26 8 -6.6095 3.5452 -4.2755 27 6 -7.9493 4.0294 -4.1625 28 6 -4.2862 4.0166 -4.0734 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0605 2.9503 35 1 2.2720 2.1232 -1.9977 36 1 0.7278 4.1531 -2.8677 37 1 0.0674 2.6131 -3.4685 38 1 -2.4094 5.3972 -1.3683 39 1 -1.0766 4.5925 -0.5059 40 1 -0.7213 5.8002 -1.7643 41 1 -1.2114 5.3242 -4.1234 42 1 -1.7382 3.7035 -4.6370 43 1 -2.7847 6.8894 -3.1421 44 1 -5.1330 7.6082 -2.9816 45 1 -6.9447 6.0294 -3.5157 46 1 -8.6464 3.2344 -4.4273 47 1 -8.1347 4.3491 -3.1371 48 1 -8.0885 4.8740 -4.8373 49 1 -4.0473 3.0098 -4.3831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935400827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:52 Heat of formation + Delta-G solvation = -76.331277 kcal Electronic energy + Delta-G solvation = -26665.986968 eV Core-core repulsion = 22978.445796 eV Total energy + Delta-G solvation = -3687.541171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.37577 -39.22709 -38.01963 -35.77367 -34.64238 -32.33421 -31.59770 -30.90781 -30.38998 -27.83186 -27.68166 -26.55074 -26.28326 -23.07116 -22.70855 -21.72237 -20.50834 -19.58563 -19.20252 -17.98020 -16.94481 -16.46002 -16.11908 -15.97002 -15.65248 -15.32375 -15.15070 -14.56942 -14.40269 -13.95757 -13.77202 -13.58413 -13.46095 -12.93710 -12.69582 -12.54159 -12.27203 -12.16996 -12.08983 -11.72148 -11.59658 -11.37373 -11.26037 -11.19071 -11.06166 -10.97026 -10.85943 -10.71397 -10.58400 -10.48765 -10.27607 -10.10284 -9.57897 -9.02652 -8.95138 -8.74824 -8.46079 -8.32481 -7.72623 -6.09575 -4.18896 1.17935 1.31968 3.04760 3.26542 3.31979 3.32985 3.52816 3.60480 4.18127 4.41516 4.58719 4.63615 4.81756 4.85140 4.89123 4.99503 5.14924 5.17476 5.21015 5.22832 5.27990 5.35368 5.44055 5.62907 5.70719 5.80308 5.86683 5.90596 5.94823 6.09811 6.13897 6.28512 6.30486 6.43468 6.49039 6.50702 6.59614 6.62521 6.70142 6.78042 7.08646 7.21331 7.24802 7.42197 7.54474 7.65779 7.78743 7.95015 8.22554 8.75467 8.82682 9.24550 9.49144 10.95609 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.002298 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.221017 B =12182.330701 C =12707.145475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.546 6.546 16 C -0.140 4.140 17 C -0.065 4.065 18 H 0.079 0.921 19 C -0.154 4.154 20 C -0.080 4.080 21 C -0.031 4.031 22 C -0.150 4.150 23 C -0.081 4.081 24 C -0.217 4.217 25 C 0.126 3.874 26 O -0.319 6.319 27 C 0.028 3.972 28 C -0.149 4.149 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.097 0.903 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.098 0.902 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 10.236 -14.471 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.360 5.360 14 C 0.285 3.715 15 O -0.425 6.425 16 C -0.181 4.181 17 C -0.084 4.084 18 H 0.097 0.903 19 C -0.211 4.211 20 C -0.117 4.117 21 C -0.032 4.032 22 C -0.168 4.168 23 C -0.099 4.099 24 C -0.236 4.236 25 C 0.081 3.919 26 O -0.232 6.232 27 C -0.067 4.067 28 C -0.167 4.167 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.111 9.896 -13.646 24.020 hybrid contribution 1.081 0.167 -0.195 1.111 sum -16.030 10.063 -13.842 23.449 Atomic orbital electron populations 1.21830 0.98329 0.97912 1.01261 1.21925 0.92619 0.99933 1.02125 1.18731 0.94007 0.89127 0.81261 0.93428 1.21214 0.90873 1.38940 1.06199 0.92229 1.24891 0.98519 0.94878 0.95440 1.69888 1.35161 1.37629 1.09314 0.86531 0.85004 0.78272 0.77417 1.20221 1.21170 1.20201 1.46518 1.14863 1.56205 1.18388 1.20364 0.82595 0.79245 0.89273 1.90631 1.51350 1.59731 1.40829 1.21780 0.97987 1.00992 0.97296 1.20785 0.95286 0.98648 0.93680 0.90256 1.22013 1.01050 0.97344 1.00688 1.20781 0.91348 1.01328 0.98288 1.19677 0.95138 0.93002 0.95343 1.20997 0.96420 0.96181 1.03248 1.20904 0.92472 0.98976 0.97561 1.21171 1.00123 0.93755 1.08517 1.19005 0.88455 0.88750 0.95669 1.86075 1.14628 1.38679 1.83859 1.23033 0.81097 1.01130 1.01418 1.20328 0.89185 1.00914 1.06310 0.94209 0.93196 0.96022 0.88436 0.95177 0.92557 0.78134 0.89612 0.89729 0.92973 0.90141 0.93710 0.90644 0.90783 0.85800 0.85967 0.85831 0.88323 0.92671 0.92798 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.26 16 3 C 0.27 6.78 2.24 -69.09 -0.15 6.63 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.83 11.29 55.43 0.63 -24.20 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 N -0.71 -14.46 5.02 -54.94 -0.28 -14.73 16 14 C 0.50 9.45 6.11 -10.98 -0.07 9.38 16 15 O -0.55 -12.17 11.11 5.56 0.06 -12.10 16 16 C -0.14 -1.89 5.18 -27.88 -0.14 -2.04 16 17 C -0.07 -0.85 2.03 -90.62 -0.18 -1.04 16 18 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 19 C -0.15 -2.15 8.50 37.16 0.32 -1.83 16 20 C -0.08 -0.83 4.84 -27.88 -0.13 -0.96 16 21 C -0.03 -0.35 4.71 -104.65 -0.49 -0.84 16 22 C -0.15 -1.56 7.96 -39.56 -0.31 -1.87 16 23 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.22 -2.16 9.04 -39.43 -0.36 -2.52 16 25 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 26 O -0.32 -3.50 10.50 -19.41 -0.20 -3.71 16 27 C 0.03 0.19 9.81 101.05 0.99 1.18 16 28 C -0.15 -1.76 9.64 -39.43 -0.38 -2.14 16 29 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 30 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 35 H 0.39 6.84 8.54 -40.82 -0.35 6.49 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.69 6.27 -51.93 -0.33 0.36 16 39 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 43 H 0.12 1.12 8.04 -52.48 -0.42 0.70 16 44 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.12 0.95 6.30 -52.49 -0.33 0.62 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 48 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 49 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -30.92 386.12 -8.91 -39.83 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.11 Total: 8.21 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.81 Total: -14.73 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.35 Total: -38.94 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.14 Total: -15.81 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.92 -8.91 -39.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935400827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.501 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds