Wall clock time and date at job start Tue Mar 31 2020 12:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.46628 * 304.99604 * 17 16 14 19 19 C 1.53000 * 109.47372 * 64.99844 * 17 16 14 20 20 C 1.53003 * 109.47059 * 184.99892 * 17 16 14 21 21 C 1.50700 * 109.47347 * 174.99778 * 20 17 16 22 22 C 1.38285 * 119.96958 * 89.99793 * 21 20 17 23 23 C 1.38241 * 120.10734 * 179.97438 * 22 21 20 24 24 C 1.38166 * 120.05824 * 359.97438 * 23 22 21 25 25 C 1.38707 * 119.94435 * 0.02626 * 24 23 22 26 26 O 1.35896 * 120.05727 * 180.02562 * 25 24 23 27 27 C 1.42901 * 116.99836 * 0.02562 * 26 25 24 28 28 C 1.38120 * 119.97074 * 269.72671 * 21 20 17 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 37 37 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 38 38 H 1.08997 * 109.46934 * 180.02562 * 19 17 16 39 39 H 1.09000 * 109.46875 * 299.99947 * 19 17 16 40 40 H 1.08999 * 109.46956 * 60.00044 * 19 17 16 41 41 H 1.08997 * 109.46827 * 295.00166 * 20 17 16 42 42 H 1.09004 * 109.46772 * 54.99074 * 20 17 16 43 43 H 1.08005 * 119.94510 * 359.97438 * 22 21 20 44 44 H 1.08007 * 119.96803 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.02531 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.46675 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.46443 * 299.98925 * 27 26 25 48 48 H 1.08995 * 109.47425 * 59.99290 * 27 26 25 49 49 H 1.08007 * 120.02818 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 1 -2.0597 3.0952 -2.2206 19 6 -1.3986 5.0008 -1.4639 20 6 -1.8343 4.4677 -3.8657 21 6 -3.2733 4.9044 -3.7676 22 6 -3.5783 6.1954 -3.3770 23 6 -4.8974 6.5992 -3.2866 24 6 -5.9144 5.7136 -3.5870 25 6 -5.6111 4.4181 -3.9790 26 8 -6.6095 3.5452 -4.2755 27 6 -7.9493 4.0294 -4.1625 28 6 -4.2862 4.0166 -4.0734 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0605 2.9503 35 1 2.2720 2.1232 -1.9977 36 1 0.7278 4.1531 -2.8677 37 1 0.0674 2.6131 -3.4685 38 1 -2.4094 5.3972 -1.3683 39 1 -1.0766 4.5925 -0.5059 40 1 -0.7213 5.8002 -1.7643 41 1 -1.2114 5.3242 -4.1234 42 1 -1.7382 3.7035 -4.6370 43 1 -2.7847 6.8894 -3.1421 44 1 -5.1330 7.6082 -2.9816 45 1 -6.9447 6.0294 -3.5157 46 1 -8.6464 3.2344 -4.4273 47 1 -8.1347 4.3491 -3.1371 48 1 -8.0885 4.8740 -4.8373 49 1 -4.0473 3.0098 -4.3831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935400827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:51 Heat of formation + Delta-G solvation = -94.005783 kcal Electronic energy + Delta-G solvation = -26666.753392 eV Core-core repulsion = 22978.445796 eV Total energy + Delta-G solvation = -3688.307595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17034 -40.68918 -38.88160 -37.20609 -36.07121 -34.23723 -32.92223 -32.25502 -31.23383 -29.40455 -28.33752 -28.00026 -27.25792 -24.95159 -23.57322 -22.78235 -21.85310 -21.06105 -20.67347 -18.94679 -18.52548 -17.30275 -17.19422 -17.10688 -16.85762 -16.64178 -16.54911 -16.09933 -15.45083 -15.18914 -14.94211 -14.64585 -14.52691 -14.43925 -13.98004 -13.74984 -13.51205 -13.39976 -13.17675 -13.06524 -12.87907 -12.80145 -12.65696 -12.57567 -12.47979 -12.20422 -12.07766 -12.05679 -11.88502 -11.72736 -11.56173 -11.51659 -11.46781 -11.02797 -10.54143 -10.35070 -9.70466 -9.50020 -9.09656 -8.13965 -6.31278 0.40039 0.53592 1.45124 1.46944 1.54655 2.03097 2.38358 2.40235 2.73993 2.89641 3.15128 3.77607 3.91152 4.02016 4.05519 4.15992 4.28969 4.31958 4.37959 4.47763 4.48434 4.50442 4.58863 4.59299 4.62693 4.71888 4.74211 4.79944 4.83553 4.84675 4.95793 5.08414 5.11756 5.13927 5.23677 5.29284 5.37332 5.46720 5.48525 5.54079 5.57261 5.59773 5.72486 5.75823 5.83539 5.90006 6.00047 6.21135 6.49167 6.78363 7.13356 7.36907 7.75068 8.90992 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.002298 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.221017 B =12182.330701 C =12707.145475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.711 5.711 14 C 0.493 3.507 15 O -0.584 6.584 16 C -0.128 4.128 17 C -0.060 4.060 18 H 0.050 0.950 19 C -0.148 4.148 20 C -0.070 4.070 21 C -0.042 4.042 22 C -0.159 4.159 23 C -0.085 4.085 24 C -0.221 4.221 25 C 0.109 3.891 26 O -0.342 6.342 27 C 0.020 3.980 28 C -0.171 4.171 29 H 0.046 0.954 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.116 0.884 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.228 11.587 -16.816 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.361 5.361 14 C 0.281 3.719 15 O -0.466 6.466 16 C -0.167 4.167 17 C -0.079 4.079 18 H 0.069 0.931 19 C -0.206 4.206 20 C -0.107 4.107 21 C -0.042 4.042 22 C -0.177 4.177 23 C -0.103 4.103 24 C -0.239 4.239 25 C 0.064 3.936 26 O -0.256 6.256 27 C -0.075 4.075 28 C -0.190 4.190 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.162 0.838 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.748 11.262 -16.036 25.777 hybrid contribution 0.839 -0.220 0.566 1.036 sum -15.909 11.041 -15.471 24.786 Atomic orbital electron populations 1.21659 0.97027 0.98892 1.00264 1.21773 0.93671 0.99443 1.01057 1.18275 0.93392 0.89007 0.81809 0.98755 1.21585 0.91645 1.38712 1.06578 0.91044 1.25794 1.03287 0.94496 0.95114 1.70054 1.37092 1.38484 1.09848 0.85439 0.79211 0.78443 0.77487 1.19611 1.21360 1.18914 1.46310 1.16023 1.56436 1.17297 1.21371 0.81404 0.78370 0.90768 1.90632 1.52292 1.60807 1.42824 1.21791 0.98513 1.01993 0.94447 1.20693 0.94520 0.97552 0.95089 0.93118 1.21930 1.01597 0.98043 0.98989 1.20702 0.91147 1.02353 0.96512 1.19810 0.95347 0.93364 0.95687 1.21253 0.97289 0.96148 1.02991 1.21263 0.92191 1.00067 0.96739 1.21460 1.01453 0.93192 1.07805 1.19234 0.88627 0.89548 0.96159 1.86040 1.16058 1.39530 1.83966 1.23307 0.79506 1.02418 1.02225 1.20496 0.89988 1.01102 1.07398 0.93522 0.95804 0.93920 0.91327 0.94180 0.92715 0.76300 0.86786 0.86852 0.92613 0.94266 0.91714 0.88541 0.89480 0.84399 0.83526 0.83776 0.86578 0.92090 0.91472 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.96 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.34 2.24 44.24 0.10 14.44 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -28.98 8.73 25.60 0.22 -28.76 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.70 5.29 84.65 0.45 1.15 16 8 N -0.92 -53.05 11.29 21.45 0.24 -52.81 16 9 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 13 N -0.71 -28.67 5.02 -446.11 -2.24 -30.91 16 14 C 0.49 18.54 6.11 87.66 0.54 19.07 16 15 O -0.58 -26.99 11.11 -3.03 -0.03 -27.03 16 16 C -0.13 -3.15 5.18 29.85 0.15 -2.99 16 17 C -0.06 -1.48 2.03 -10.79 -0.02 -1.50 16 18 H 0.05 1.56 7.95 -2.39 -0.02 1.54 16 19 C -0.15 -4.05 8.50 71.98 0.61 -3.44 16 20 C -0.07 -1.27 4.84 29.85 0.14 -1.13 16 21 C -0.04 -0.88 4.71 -19.88 -0.09 -0.97 16 22 C -0.16 -2.97 7.96 22.28 0.18 -2.80 16 23 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 24 C -0.22 -4.07 9.04 22.36 0.20 -3.86 16 25 C 0.11 2.46 6.69 22.51 0.15 2.61 16 26 O -0.34 -7.41 10.50 -92.38 -0.97 -8.38 16 27 C 0.02 0.24 9.81 113.37 1.11 1.35 16 28 C -0.17 -4.00 9.64 22.37 0.22 -3.78 16 29 H 0.05 2.05 5.65 -2.39 -0.01 2.04 16 30 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 31 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.07 3.85 5.95 -2.39 -0.01 3.84 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.40 13.57 8.54 -92.71 -0.79 12.78 16 36 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.44 6.27 -2.39 -0.01 1.43 16 39 H 0.04 1.40 5.95 -2.39 -0.01 1.38 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 42 H 0.09 1.37 8.08 -2.38 -0.02 1.35 16 43 H 0.14 2.12 8.04 -2.91 -0.02 2.10 16 44 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.14 1.92 6.30 -2.91 -0.02 1.90 16 46 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 48 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 49 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -70.53 386.12 4.13 -66.40 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.14 Total: 31.12 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.96 Total: -22.65 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.00 Total: -83.72 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -1.00 Total: -35.40 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -70.53 4.13 -66.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935400827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.609 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds