Wall clock time and date at job start Tue Mar 31 2020 12:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 H 1.09001 * 109.47157 * 305.65271 * 3 2 1 5 5 C 1.50708 * 109.47166 * 185.65905 * 3 2 1 6 6 H 1.08000 * 119.99810 * 240.00258 * 5 3 2 7 7 C 1.37873 * 119.99800 * 59.99294 * 5 3 2 8 8 N 1.31509 * 120.00488 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99799 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46651 * 90.00576 * 9 7 5 11 11 H 1.48497 * 109.47136 * 210.00266 * 9 7 5 12 12 H 1.48497 * 109.47122 * 330.00601 * 9 7 5 13 13 N 1.46897 * 109.47490 * 65.65605 * 3 2 1 14 14 C 1.46894 * 111.00354 * 209.37637 * 13 3 2 15 15 H 1.09007 * 109.54316 * 32.08499 * 14 13 3 16 16 C 1.53177 * 109.54696 * 271.90959 * 14 13 3 17 17 C 1.53093 * 109.16210 * 297.02303 * 16 14 13 18 18 O 1.42900 * 109.41872 * 302.39207 * 17 16 14 19 19 C 1.42907 * 114.09667 * 61.15187 * 18 17 16 20 20 H 1.09003 * 109.47750 * 58.84271 * 19 18 17 21 21 C 1.50699 * 109.47895 * 178.86189 * 19 18 17 22 22 C 1.38266 * 119.94435 * 219.97988 * 21 19 18 23 23 C 1.38145 * 120.05449 * 180.02562 * 22 21 19 24 24 C 1.38729 * 119.94519 * 359.97438 * 23 22 21 25 25 O 1.35905 * 120.05451 * 180.02562 * 24 23 22 26 26 C 1.42906 * 116.99788 * 180.02562 * 25 24 23 27 27 C 1.38735 * 119.88821 * 0.28375 * 24 23 22 28 28 C 1.38136 * 119.94288 * 359.46645 * 27 24 23 29 29 C 1.53085 * 109.42812 * 298.85176 * 19 18 17 30 30 H 1.08997 * 109.46758 * 174.17414 * 1 2 3 31 31 H 1.09004 * 109.46981 * 294.17115 * 1 2 3 32 32 H 1.08996 * 109.47324 * 54.17117 * 1 2 3 33 33 H 1.09001 * 109.46762 * 240.00291 * 2 1 3 34 34 H 1.09000 * 109.47068 * 120.00004 * 2 1 3 35 35 H 0.96995 * 120.00712 * 179.97438 * 8 7 5 36 36 H 1.00902 * 110.99780 * 333.33666 * 13 3 2 37 37 H 1.08998 * 109.52718 * 177.11942 * 16 14 13 38 38 H 1.09003 * 109.52341 * 56.92447 * 16 14 13 39 39 H 1.08995 * 109.47977 * 182.40512 * 17 16 14 40 40 H 1.09008 * 109.49192 * 62.37995 * 17 16 14 41 41 H 1.07997 * 119.97352 * 359.97438 * 22 21 19 42 42 H 1.07999 * 120.02617 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.46922 * 299.99730 * 26 25 24 44 44 H 1.09000 * 109.46797 * 180.02562 * 26 25 24 45 45 H 1.08990 * 109.47251 * 59.99994 * 26 25 24 46 46 H 1.08005 * 120.02646 * 179.71485 * 27 24 23 47 47 H 1.08004 * 119.97320 * 180.23085 * 28 27 24 48 48 H 1.08996 * 109.52463 * 177.50709 * 29 19 18 49 49 H 1.08996 * 109.52521 * 297.69844 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8350 5 6 3.5406 1.4449 -0.1401 6 1 4.1542 1.8865 0.6311 7 6 4.1299 0.8831 -1.2528 8 7 3.3827 0.3457 -2.1921 9 14 5.9898 0.8854 -1.4261 10 1 6.5453 -0.3490 -0.8154 11 1 6.3528 0.9322 -2.8653 12 1 6.5499 2.0747 -0.7354 13 7 1.6650 2.0945 1.2618 14 6 1.4831 3.5400 1.0738 15 1 1.1073 3.7325 0.0688 16 6 2.8245 4.2545 1.2648 17 6 3.3058 4.0437 2.7027 18 8 2.3162 4.5310 3.6112 19 6 1.0546 3.8673 3.5107 20 1 1.1885 2.8018 3.6980 21 6 0.1026 4.4407 4.5285 22 6 -0.7536 3.6043 5.2207 23 6 -1.6276 4.1276 6.1539 24 6 -1.6453 5.4933 6.3966 25 8 -2.5039 6.0104 7.3145 26 6 -2.4674 7.4253 7.5120 27 6 -0.7889 6.3310 5.6969 28 6 0.0867 5.8023 4.7685 29 6 0.4827 4.0707 2.1053 30 1 -0.3633 -1.0223 -0.1043 31 1 -0.3633 0.4208 0.9376 32 1 -0.3634 0.6015 -0.8332 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7972 -0.0492 -2.9750 36 1 0.8360 1.6737 1.6538 37 1 2.6997 5.3205 1.0751 38 1 3.5581 3.8435 0.5712 39 1 4.2389 4.5855 2.8568 40 1 3.4694 2.9806 2.8794 41 1 -0.7397 2.5412 5.0311 42 1 -2.2965 3.4739 6.6940 43 1 -1.4718 7.7204 7.8434 44 1 -3.1998 7.7054 8.2692 45 1 -2.7026 7.9292 6.5746 46 1 -0.8041 7.3952 5.8807 47 1 0.7562 6.4535 4.2262 48 1 -0.4582 3.5284 2.0129 49 1 0.3105 5.1330 1.9324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168610104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:18 Heat of formation + Delta-G solvation = -65.386983 kcal Electronic energy + Delta-G solvation = -27576.197145 eV Core-core repulsion = 23889.130554 eV Total energy + Delta-G solvation = -3687.066591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.34556 -39.26898 -37.40816 -36.07393 -33.32964 -32.08453 -31.67798 -31.11807 -29.22906 -28.91191 -27.39739 -26.22217 -24.04389 -23.27993 -22.81238 -22.50685 -21.00867 -19.65712 -18.83315 -18.28916 -16.47124 -16.45455 -16.16869 -15.92371 -15.39646 -14.97377 -14.79748 -14.72677 -14.31532 -13.98700 -13.73906 -13.56679 -13.26102 -13.00699 -12.96374 -12.74949 -12.57809 -12.18341 -12.05946 -11.68398 -11.60688 -11.45745 -11.18190 -11.08446 -10.94281 -10.87060 -10.71745 -10.64475 -10.30362 -9.96803 -9.86272 -9.64754 -9.50364 -9.15369 -9.04076 -8.92915 -8.34247 -8.11990 -7.25596 -5.97598 -4.01028 1.29174 1.36915 3.09747 3.31126 3.38209 3.40871 3.66781 4.17449 4.43164 4.68816 4.79485 4.88786 4.91972 4.96521 5.11932 5.18805 5.29524 5.34713 5.37354 5.42123 5.49454 5.52589 5.66708 5.74065 5.79063 5.98450 6.04049 6.12512 6.14332 6.14973 6.22239 6.29420 6.33247 6.38883 6.51579 6.57843 6.58943 6.68101 6.76786 6.83781 6.89599 7.06268 7.17531 7.25496 7.47282 7.70957 7.76739 7.91680 8.30070 8.39680 8.73284 9.06055 9.63525 11.07738 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.002908 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.337792 B = 9625.853367 C =10390.471341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.488 4.488 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.095 3.905 15 H 0.041 0.959 16 C -0.142 4.142 17 C 0.072 3.928 18 O -0.387 6.387 19 C 0.145 3.855 20 H 0.074 0.926 21 C -0.109 4.109 22 C -0.071 4.071 23 C -0.153 4.153 24 C 0.119 3.881 25 O -0.321 6.321 26 C 0.028 3.972 27 C -0.211 4.211 28 C -0.054 4.054 29 C -0.145 4.145 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.259 0.741 36 H 0.317 0.683 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.129 0.871 48 H 0.065 0.935 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 10.771 14.403 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.015 4.015 15 H 0.059 0.941 16 C -0.180 4.180 17 C -0.004 4.004 18 O -0.306 6.306 19 C 0.087 3.913 20 H 0.092 0.908 21 C -0.109 4.109 22 C -0.089 4.089 23 C -0.172 4.172 24 C 0.075 3.925 25 O -0.235 6.235 26 C -0.067 4.067 27 C -0.230 4.230 28 C -0.072 4.072 29 C -0.183 4.183 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.143 0.857 47 H 0.147 0.853 48 H 0.084 0.916 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.366 10.800 14.683 20.492 hybrid contribution 0.198 0.053 -1.045 1.065 sum -9.167 10.853 13.637 19.693 Atomic orbital electron populations 1.21875 0.99656 0.99683 0.99455 1.21812 0.91174 1.00618 1.03060 1.19247 0.95535 0.89812 0.84175 0.97894 1.21233 0.91214 1.36163 1.04082 0.91807 1.24968 0.97880 0.95775 0.96008 1.69863 1.34608 1.39579 1.09579 0.86603 0.86055 0.78401 0.76951 1.20843 1.21539 1.19958 1.60786 1.38482 1.00774 1.31294 1.21424 0.93926 0.90266 0.95918 0.94145 1.22187 0.99070 0.98489 0.98280 1.22475 0.89452 1.00170 0.88287 1.87796 1.20913 1.61840 1.60071 1.20618 0.82964 0.96037 0.91706 0.90784 1.19730 0.98375 0.93791 0.99025 1.20827 0.94210 0.99849 0.93995 1.20341 1.02777 0.92192 1.01868 1.19043 0.90480 0.93106 0.89907 1.86050 1.57130 1.23944 1.56332 1.23025 1.02621 0.79195 1.01865 1.21225 1.00495 0.99631 1.01664 1.20820 0.95912 0.94943 0.95529 1.22419 0.98781 1.01674 0.95427 0.94436 0.94724 0.93943 0.88268 0.94118 0.93139 0.86468 0.93089 0.88602 0.90312 0.91232 0.85076 0.85268 0.92687 0.88433 0.92702 0.85700 0.85299 0.91631 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.66 37.16 0.36 -2.43 16 2 C -0.13 -2.90 5.33 -26.73 -0.14 -3.04 16 3 C 0.22 5.15 2.03 -68.86 -0.14 5.01 16 4 H 0.00 0.09 7.32 -51.93 -0.38 -0.29 16 5 C -0.49 -12.66 7.49 -34.44 -0.26 -12.92 16 6 H 0.06 1.66 6.95 -52.49 -0.36 1.30 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -24.88 11.29 55.43 0.63 -24.26 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.30 4.98 -100.76 -0.50 -13.80 16 14 C 0.10 1.70 2.86 -67.53 -0.19 1.50 16 15 H 0.04 0.79 7.33 -51.93 -0.38 0.41 16 16 C -0.14 -2.51 5.55 -26.59 -0.15 -2.66 16 17 C 0.07 1.21 6.68 37.21 0.25 1.45 16 18 O -0.39 -6.28 9.73 -35.23 -0.34 -6.62 16 19 C 0.14 2.14 2.69 -27.84 -0.07 2.06 16 20 H 0.07 1.15 7.53 -51.93 -0.39 0.76 16 21 C -0.11 -1.46 4.98 -104.60 -0.52 -1.98 16 22 C -0.07 -0.85 9.66 -39.61 -0.38 -1.24 16 23 C -0.15 -1.79 9.99 -39.43 -0.39 -2.18 16 24 C 0.12 1.41 6.69 -39.22 -0.26 1.15 16 25 O -0.32 -3.48 10.50 -19.44 -0.20 -3.69 16 26 C 0.03 0.19 9.81 101.05 0.99 1.19 16 27 C -0.21 -2.40 9.04 -39.44 -0.36 -2.76 16 28 C -0.05 -0.69 9.35 -39.61 -0.37 -1.06 16 29 C -0.14 -2.16 4.76 -26.59 -0.13 -2.28 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.57 6.67 -51.93 -0.35 0.23 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 2.56 5.94 -51.93 -0.31 2.25 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.32 5.74 6.04 -39.29 -0.24 5.51 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.96 6.06 -51.93 -0.31 1.64 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.28 7.75 -51.92 -0.40 0.87 16 41 H 0.13 1.37 8.03 -52.49 -0.42 0.95 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 46 H 0.13 1.13 6.30 -52.48 -0.33 0.80 16 47 H 0.13 1.61 7.77 -52.48 -0.41 1.20 16 48 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -28.24 379.65 -9.60 -37.84 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.02 Total: 7.69 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.86 Total: -18.83 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.12 Total: -38.05 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.55 Total: -10.31 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.24 -9.60 -37.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168610104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.543 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds