Wall clock time and date at job start Tue Mar 31 2020 12:09:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52990 * 109.47513 * 2 1
4 4 H 1.09006 * 109.47019 * 305.68616 * 3 2 1
5 5 C 1.50698 * 109.47731 * 185.68580 * 3 2 1
6 6 H 1.07998 * 120.00560 * 240.00504 * 5 3 2
7 7 C 1.37884 * 119.99871 * 59.99785 * 5 3 2
8 8 N 1.31514 * 120.00075 * 180.02562 * 7 5 3
9 9 Si 1.86792 * 119.99814 * 0.02562 * 7 5 3
10 10 H 1.48502 * 109.47468 * 269.99789 * 9 7 5
11 11 H 1.48500 * 109.47345 * 30.00206 * 9 7 5
12 12 H 1.48508 * 109.47286 * 149.99910 * 9 7 5
13 13 N 1.46900 * 109.47409 * 65.68457 * 3 2 1
14 14 C 1.46893 * 111.00558 * 203.88276 * 13 3 2
15 15 H 1.09000 * 109.54558 * 326.61891 * 14 13 3
16 16 C 1.53180 * 109.54486 * 86.79191 * 14 13 3
17 17 C 1.53279 * 109.06302 * 62.97497 * 16 14 13
18 18 O 1.42910 * 109.46143 * 57.55160 * 17 16 14
19 19 C 1.42897 * 114.09753 * 298.84286 * 18 17 16
20 20 H 1.09002 * 109.49480 * 301.17077 * 19 18 17
21 21 C 1.50698 * 109.48027 * 181.13883 * 19 18 17
22 22 C 1.38270 * 119.94283 * 324.79033 * 21 19 18
23 23 C 1.38153 * 120.05291 * 179.72749 * 22 21 19
24 24 C 1.38731 * 119.94149 * 0.54138 * 23 22 21
25 25 O 1.35898 * 120.05469 * 179.75621 * 24 23 22
26 26 C 1.42906 * 117.00148 * 359.97303 * 25 24 23
27 27 C 1.38730 * 119.88970 * 359.72532 * 24 23 22
28 28 C 1.38136 * 119.94517 * 0.02562 * 27 24 23
29 29 C 1.53092 * 109.41468 * 61.15830 * 19 18 17
30 30 H 1.09004 * 109.47074 * 294.34761 * 1 2 3
31 31 H 1.08995 * 109.46689 * 54.34718 * 1 2 3
32 32 H 1.08997 * 109.46949 * 174.35268 * 1 2 3
33 33 H 1.09001 * 109.47331 * 239.99614 * 2 1 3
34 34 H 1.09009 * 109.47253 * 120.00096 * 2 1 3
35 35 H 0.97001 * 120.00169 * 179.97438 * 8 7 5
36 36 H 1.00900 * 110.99945 * 327.83780 * 13 3 2
37 37 H 1.09001 * 109.52195 * 182.79094 * 16 14 13
38 38 H 1.08998 * 109.52322 * 302.98344 * 16 14 13
39 39 H 1.09000 * 109.45538 * 297.55776 * 17 16 14
40 40 H 1.08993 * 109.46128 * 177.55045 * 17 16 14
41 41 H 1.07995 * 119.97365 * 359.97438 * 22 21 19
42 42 H 1.07996 * 120.02779 * 180.27114 * 23 22 21
43 43 H 1.09000 * 109.46744 * 300.00896 * 26 25 24
44 44 H 1.09000 * 109.46584 * 59.99963 * 26 25 24
45 45 H 1.08992 * 109.47483 * 180.02562 * 26 25 24
46 46 H 1.08003 * 120.02186 * 179.97438 * 27 24 23
47 47 H 1.08008 * 119.97042 * 180.02562 * 28 27 24
48 48 H 1.09008 * 109.52445 * 182.48163 * 29 19 18
49 49 H 1.09009 * 109.52285 * 62.29826 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5960 1.9848 -0.8347
5 6 3.5404 1.4448 -0.1408
6 1 4.1545 1.8862 0.6302
7 6 4.1293 0.8832 -1.2539
8 7 5.4387 0.8848 -1.3765
9 14 3.0673 0.1202 -2.5877
10 1 2.8488 -1.3171 -2.2849
11 1 1.7584 0.8198 -2.6390
12 1 3.7502 0.2514 -3.8999
13 7 1.6657 2.0942 1.2621
14 6 1.6109 3.5537 1.1049
15 1 2.3647 3.8714 0.3846
16 6 0.2215 3.9637 0.6071
17 6 -0.8215 3.5825 1.6636
18 8 -0.4970 4.2155 2.9031
19 6 0.7715 3.8334 3.4388
20 1 0.7901 2.7550 3.5961
21 6 0.9947 4.5369 4.7526
22 6 0.5255 5.8248 4.9344
23 6 0.7239 6.4698 6.1399
24 6 1.4044 5.8284 7.1646
25 8 1.6052 6.4626 8.3496
26 6 1.0889 7.7895 8.4710
27 6 1.8790 4.5382 6.9778
28 6 1.6736 3.8957 5.7723
29 6 1.8778 4.2249 2.4557
30 1 -0.3633 0.4237 0.9363
31 1 -0.3632 0.5990 -0.8350
32 1 -0.3633 -1.0227 -0.1011
33 1 1.8934 -0.5139 -0.8899
34 1 1.8934 -0.5139 0.8900
35 1 5.8530 0.4895 -2.1595
36 1 0.7889 1.7347 1.6086
37 1 0.1965 5.0410 0.4433
38 1 0.0023 3.4470 -0.3273
39 1 -0.8240 2.5008 1.7976
40 1 -1.8077 3.9105 1.3353
41 1 0.0000 6.3255 4.1347
42 1 0.3534 7.4741 6.2828
43 1 1.5469 8.4281 7.7157
44 1 0.0086 7.7736 8.3267
45 1 1.3176 8.1791 9.4629
46 1 2.4095 4.0370 7.7740
47 1 2.0425 2.8911 5.6266
48 1 2.8422 3.8950 2.8422
49 1 1.8863 5.3076 2.3291
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001168610107.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:27
Heat of formation + Delta-G solvation = -56.448177 kcal
Electronic energy + Delta-G solvation = -27626.674765 eV
Core-core repulsion = 23939.995790 eV
Total energy + Delta-G solvation = -3686.678975 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.38518 -39.53672 -37.51284 -36.33470 -33.51994 -32.24381 -31.92901 -31.09684
-29.57349 -28.96237 -27.36876 -26.76312 -24.36676 -23.47843 -22.69397 -22.50667
-21.09165 -20.12524 -18.86010 -18.26917 -16.75189 -16.54766 -16.50501 -15.90017
-15.61794 -15.31191 -14.95242 -14.72111 -14.36047 -14.27162 -13.83973 -13.70253
-13.46526 -13.41155 -13.03000 -12.70075 -12.68804 -12.22785 -12.17506 -12.11097
-11.82724 -11.71030 -11.43188 -11.31661 -11.02105 -10.98536 -10.87857 -10.63935
-10.52937 -10.40211 -10.02070 -9.95468 -9.45297 -9.20237 -9.18916 -9.00644
-8.54003 -8.09791 -7.42035 -6.05386 -4.02295 1.31986 1.38843 3.12331
3.23598 3.33518 3.36234 3.65610 3.94399 4.38767 4.70596 4.81733
4.86987 4.90687 4.94338 4.97773 5.12023 5.19659 5.21060 5.22679
5.32209 5.37201 5.39781 5.43663 5.52339 5.63585 5.67913 5.75020
5.78755 5.90903 5.91849 6.01725 6.11263 6.17018 6.25589 6.30694
6.35188 6.43083 6.51011 6.51513 6.60140 6.66623 6.69321 6.73973
6.79227 7.16513 7.27811 7.40653 7.70150 7.94264 8.22489 8.73768
9.07271 9.57669 11.08013
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.021504 B = 0.002969 C = 0.002801
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.771430 B = 9429.702481 C = 9993.294142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.136 4.136
3 C 0.190 3.810
4 H 0.001 0.999
5 C -0.495 4.495
6 H 0.081 0.919
7 C 0.066 3.934
8 N -0.901 5.901
9 Si 0.881 3.119
10 H -0.279 1.279
11 H -0.268 1.268
12 H -0.298 1.298
13 N -0.669 5.669
14 C 0.090 3.910
15 H 0.092 0.908
16 C -0.187 4.187
17 C 0.065 3.935
18 O -0.381 6.381
19 C 0.136 3.864
20 H 0.074 0.926
21 C -0.108 4.108
22 C -0.056 4.056
23 C -0.212 4.212
24 C 0.120 3.880
25 O -0.320 6.320
26 C 0.028 3.972
27 C -0.152 4.152
28 C -0.068 4.068
29 C -0.126 4.126
30 H 0.048 0.952
31 H 0.045 0.955
32 H 0.045 0.955
33 H 0.054 0.946
34 H 0.068 0.932
35 H 0.263 0.737
36 H 0.317 0.683
37 H 0.070 0.930
38 H 0.071 0.929
39 H 0.049 0.951
40 H 0.089 0.911
41 H 0.129 0.871
42 H 0.125 0.875
43 H 0.055 0.945
44 H 0.054 0.946
45 H 0.097 0.903
46 H 0.130 0.870
47 H 0.134 0.866
48 H 0.083 0.917
49 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.826 10.321 13.794 21.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.174 4.174
3 C 0.082 3.918
4 H 0.018 0.982
5 C -0.534 4.534
6 H 0.099 0.901
7 C -0.135 4.135
8 N -0.539 5.539
9 Si 0.712 3.288
10 H -0.206 1.206
11 H -0.194 1.194
12 H -0.226 1.226
13 N -0.301 5.301
14 C -0.021 4.021
15 H 0.110 0.890
16 C -0.227 4.227
17 C -0.012 4.012
18 O -0.300 6.300
19 C 0.079 3.921
20 H 0.092 0.908
21 C -0.108 4.108
22 C -0.074 4.074
23 C -0.231 4.231
24 C 0.075 3.925
25 O -0.234 6.234
26 C -0.067 4.067
27 C -0.170 4.170
28 C -0.086 4.086
29 C -0.164 4.164
30 H 0.067 0.933
31 H 0.064 0.936
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.087 0.913
35 H 0.073 0.927
36 H 0.136 0.864
37 H 0.089 0.911
38 H 0.090 0.910
39 H 0.067 0.933
40 H 0.107 0.893
41 H 0.147 0.853
42 H 0.143 0.857
43 H 0.073 0.927
44 H 0.073 0.927
45 H 0.116 0.884
46 H 0.148 0.852
47 H 0.152 0.848
48 H 0.101 0.899
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -12.040 10.328 14.188 21.282
hybrid contribution -1.256 -0.372 -1.719 2.161
sum -13.296 9.955 12.469 20.769
Atomic orbital electron populations
1.21931 0.98297 1.00636 1.00566 1.22121 0.92856 1.00566 1.01854
1.19632 0.96852 0.89153 0.86199 0.98185 1.21031 0.89103 1.37457
1.05769 0.90088 1.24964 0.94735 0.96017 0.97766 1.69885 1.08932
1.45837 1.29278 0.86958 0.80731 0.79788 0.81296 1.20628 1.19359
1.22561 1.60667 1.35200 1.02357 1.31863 1.21539 0.94867 0.89436
0.96219 0.88982 1.22902 0.98106 1.02398 0.99255 1.22545 0.98015
0.96736 0.83934 1.87846 1.35997 1.68883 1.37323 1.20815 0.83820
0.97717 0.89781 0.90833 1.19606 1.01086 0.95022 0.95080 1.20790
0.96519 0.93856 0.96202 1.21208 1.05815 1.01307 0.94748 1.19047
0.95970 0.92581 0.84880 1.86052 1.75387 1.29316 1.32655 1.23022
0.98844 0.81703 1.03125 1.20354 1.04899 0.93029 0.98768 1.20837
0.96625 0.99859 0.91274 1.22160 0.99177 0.99773 0.95293 0.93338
0.93568 0.93546 0.92791 0.91327 0.92742 0.86403 0.91136 0.91044
0.93271 0.89306 0.85339 0.85726 0.92683 0.92746 0.88438 0.85183
0.84836 0.89867 0.91773
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.58 9.64 37.16 0.36 -2.22 16
2 C -0.14 -2.82 5.02 -26.74 -0.13 -2.96 16
3 C 0.19 4.25 1.44 -68.87 -0.10 4.15 16
4 H 0.00 0.02 6.30 -51.93 -0.33 -0.31 16
5 C -0.50 -13.56 9.03 -34.44 -0.31 -13.87 16
6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16
7 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16
8 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16
9 Si 0.88 21.59 24.41 -169.99 -4.15 17.44 16
10 H -0.28 -6.68 6.82 56.52 0.39 -6.30 16
11 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16
12 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16
13 N -0.67 -12.73 5.63 -100.77 -0.57 -13.30 16
14 C 0.09 1.56 2.67 -67.53 -0.18 1.38 16
15 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16
16 C -0.19 -2.72 5.72 -26.49 -0.15 -2.87 16
17 C 0.06 0.85 6.59 37.30 0.25 1.09 16
18 O -0.38 -5.40 9.56 -35.23 -0.34 -5.74 16
19 C 0.14 1.93 2.61 -27.84 -0.07 1.85 16
20 H 0.07 1.08 7.33 -51.93 -0.38 0.70 16
21 C -0.11 -1.44 5.01 -104.60 -0.52 -1.96 16
22 C -0.06 -0.70 9.34 -39.60 -0.37 -1.07 16
23 C -0.21 -2.41 9.04 -39.43 -0.36 -2.77 16
24 C 0.12 1.45 6.69 -39.22 -0.26 1.19 16
25 O -0.32 -3.56 10.50 -19.42 -0.20 -3.76 16
26 C 0.03 0.20 9.81 101.05 0.99 1.19 16
27 C -0.15 -1.84 9.99 -39.44 -0.39 -2.23 16
28 C -0.07 -0.85 9.67 -39.61 -0.38 -1.23 16
29 C -0.13 -1.94 5.10 -26.59 -0.14 -2.08 16
30 H 0.05 0.71 6.30 -51.93 -0.33 0.38 16
31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
33 H 0.05 1.21 3.22 -51.93 -0.17 1.05 16
34 H 0.07 1.43 8.14 -51.92 -0.42 1.00 16
35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
36 H 0.32 5.38 3.77 -39.29 -0.15 5.23 16
37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
38 H 0.07 1.08 7.53 -51.93 -0.39 0.69 16
39 H 0.05 0.65 6.06 -51.93 -0.31 0.33 16
40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
41 H 0.13 1.54 7.63 -52.49 -0.40 1.14 16
42 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16
43 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16
44 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16
45 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16
46 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16
47 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16
48 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16
49 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16
LS Contribution 372.30 15.07 5.61 5.61
Total: -1.00 -30.72 372.30 -8.56 -39.28
By element:
Atomic # 1 Polarization: 15.48 SS G_CDS: -7.81 Total: 7.67 kcal
Atomic # 6 Polarization: -18.75 SS G_CDS: -1.88 Total: -20.63 kcal
Atomic # 7 Polarization: -40.08 SS G_CDS: 0.21 Total: -39.87 kcal
Atomic # 8 Polarization: -8.96 SS G_CDS: -0.54 Total: -9.50 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -4.15 Total: 17.44 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -30.72 -8.56 -39.28 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168610107.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.169 kcal
(2) G-P(sol) polarization free energy of solvation -30.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds