Wall clock time and date at job start Tue Mar 31 2020 12:09:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52990 * 109.47513 * 2 1
4 4 H 1.09006 * 109.47019 * 305.68616 * 3 2 1
5 5 C 1.50698 * 109.47731 * 185.68580 * 3 2 1
6 6 H 1.07998 * 120.00560 * 240.00504 * 5 3 2
7 7 C 1.37884 * 119.99871 * 59.99785 * 5 3 2
8 8 N 1.31514 * 120.00075 * 180.02562 * 7 5 3
9 9 Si 1.86792 * 119.99814 * 0.02562 * 7 5 3
10 10 H 1.48502 * 109.47468 * 269.99789 * 9 7 5
11 11 H 1.48500 * 109.47345 * 30.00206 * 9 7 5
12 12 H 1.48508 * 109.47286 * 149.99910 * 9 7 5
13 13 N 1.46900 * 109.47409 * 65.68457 * 3 2 1
14 14 C 1.46893 * 111.00558 * 203.88276 * 13 3 2
15 15 H 1.09000 * 109.54558 * 326.61891 * 14 13 3
16 16 C 1.53180 * 109.54486 * 86.79191 * 14 13 3
17 17 C 1.53279 * 109.06302 * 62.97497 * 16 14 13
18 18 O 1.42910 * 109.46143 * 57.55160 * 17 16 14
19 19 C 1.42897 * 114.09753 * 298.84286 * 18 17 16
20 20 H 1.09002 * 109.49480 * 301.17077 * 19 18 17
21 21 C 1.50698 * 109.48027 * 181.13883 * 19 18 17
22 22 C 1.38270 * 119.94283 * 324.79033 * 21 19 18
23 23 C 1.38153 * 120.05291 * 179.72749 * 22 21 19
24 24 C 1.38731 * 119.94149 * 0.54138 * 23 22 21
25 25 O 1.35898 * 120.05469 * 179.75621 * 24 23 22
26 26 C 1.42906 * 117.00148 * 359.97303 * 25 24 23
27 27 C 1.38730 * 119.88970 * 359.72532 * 24 23 22
28 28 C 1.38136 * 119.94517 * 0.02562 * 27 24 23
29 29 C 1.53092 * 109.41468 * 61.15830 * 19 18 17
30 30 H 1.09004 * 109.47074 * 294.34761 * 1 2 3
31 31 H 1.08995 * 109.46689 * 54.34718 * 1 2 3
32 32 H 1.08997 * 109.46949 * 174.35268 * 1 2 3
33 33 H 1.09001 * 109.47331 * 239.99614 * 2 1 3
34 34 H 1.09009 * 109.47253 * 120.00096 * 2 1 3
35 35 H 0.97001 * 120.00169 * 179.97438 * 8 7 5
36 36 H 1.00900 * 110.99945 * 327.83780 * 13 3 2
37 37 H 1.09001 * 109.52195 * 182.79094 * 16 14 13
38 38 H 1.08998 * 109.52322 * 302.98344 * 16 14 13
39 39 H 1.09000 * 109.45538 * 297.55776 * 17 16 14
40 40 H 1.08993 * 109.46128 * 177.55045 * 17 16 14
41 41 H 1.07995 * 119.97365 * 359.97438 * 22 21 19
42 42 H 1.07996 * 120.02779 * 180.27114 * 23 22 21
43 43 H 1.09000 * 109.46744 * 300.00896 * 26 25 24
44 44 H 1.09000 * 109.46584 * 59.99963 * 26 25 24
45 45 H 1.08992 * 109.47483 * 180.02562 * 26 25 24
46 46 H 1.08003 * 120.02186 * 179.97438 * 27 24 23
47 47 H 1.08008 * 119.97042 * 180.02562 * 28 27 24
48 48 H 1.09008 * 109.52445 * 182.48163 * 29 19 18
49 49 H 1.09009 * 109.52285 * 62.29826 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5960 1.9848 -0.8347
5 6 3.5404 1.4448 -0.1408
6 1 4.1545 1.8862 0.6302
7 6 4.1293 0.8832 -1.2539
8 7 5.4387 0.8848 -1.3765
9 14 3.0673 0.1202 -2.5877
10 1 2.8488 -1.3171 -2.2849
11 1 1.7584 0.8198 -2.6390
12 1 3.7502 0.2514 -3.8999
13 7 1.6657 2.0942 1.2621
14 6 1.6109 3.5537 1.1049
15 1 2.3647 3.8714 0.3846
16 6 0.2215 3.9637 0.6071
17 6 -0.8215 3.5825 1.6636
18 8 -0.4970 4.2155 2.9031
19 6 0.7715 3.8334 3.4388
20 1 0.7901 2.7550 3.5961
21 6 0.9947 4.5369 4.7526
22 6 0.5255 5.8248 4.9344
23 6 0.7239 6.4698 6.1399
24 6 1.4044 5.8284 7.1646
25 8 1.6052 6.4626 8.3496
26 6 1.0889 7.7895 8.4710
27 6 1.8790 4.5382 6.9778
28 6 1.6736 3.8957 5.7723
29 6 1.8778 4.2249 2.4557
30 1 -0.3633 0.4237 0.9363
31 1 -0.3632 0.5990 -0.8350
32 1 -0.3633 -1.0227 -0.1011
33 1 1.8934 -0.5139 -0.8899
34 1 1.8934 -0.5139 0.8900
35 1 5.8530 0.4895 -2.1595
36 1 0.7889 1.7347 1.6086
37 1 0.1965 5.0410 0.4433
38 1 0.0023 3.4470 -0.3273
39 1 -0.8240 2.5008 1.7976
40 1 -1.8077 3.9105 1.3353
41 1 0.0000 6.3255 4.1347
42 1 0.3534 7.4741 6.2828
43 1 1.5469 8.4281 7.7157
44 1 0.0086 7.7736 8.3267
45 1 1.3176 8.1791 9.4629
46 1 2.4095 4.0370 7.7740
47 1 2.0425 2.8911 5.6266
48 1 2.8422 3.8950 2.8422
49 1 1.8863 5.3076 2.3291
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001168610107.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:26
Heat of formation + Delta-G solvation = -76.212873 kcal
Electronic energy + Delta-G solvation = -27627.531827 eV
Core-core repulsion = 23939.995790 eV
Total energy + Delta-G solvation = -3687.536037 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.38147 -40.60954 -38.55819 -37.73419 -35.05745 -33.96951 -33.23082 -32.00605
-30.96819 -29.97701 -28.67764 -28.03963 -25.51770 -24.60910 -24.35116 -23.50277
-22.08672 -21.82954 -20.23765 -19.10176 -18.80064 -17.66893 -17.46485 -17.00125
-16.64609 -16.58006 -16.21019 -16.01241 -15.95753 -15.37695 -15.09563 -14.98737
-14.56593 -14.48662 -14.41341 -14.02344 -13.85331 -13.73082 -13.48031 -13.24911
-12.94626 -12.80650 -12.76887 -12.65725 -12.41224 -12.32840 -12.16597 -11.92734
-11.88470 -11.73325 -11.59584 -11.37021 -11.18932 -11.07899 -10.66192 -10.36736
-9.93315 -9.07637 -8.98501 -8.26195 -6.27411 0.38994 0.44167 1.28522
1.33390 1.43457 2.31760 2.39785 2.67359 2.91367 3.06880 3.44746
3.81095 3.89630 3.90761 3.98244 4.05899 4.14739 4.19873 4.23951
4.30567 4.34784 4.37300 4.41470 4.41723 4.48938 4.57542 4.58108
4.72721 4.75825 4.78757 4.81682 4.91902 4.99370 5.06037 5.06783
5.10640 5.12007 5.16442 5.22964 5.28156 5.31710 5.42186 5.48487
5.67163 5.73833 5.81123 6.09536 6.29977 6.46616 6.51673 6.79727
6.96302 7.37065 8.91274
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.021504 B = 0.002969 C = 0.002801
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.771430 B = 9429.702481 C = 9993.294142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.137 4.137
3 C 0.198 3.802
4 H -0.003 1.003
5 C -0.496 4.496
6 H 0.031 0.969
7 C 0.006 3.994
8 N -0.953 5.953
9 Si 0.948 3.052
10 H -0.266 1.266
11 H -0.246 1.246
12 H -0.303 1.303
13 N -0.675 5.675
14 C 0.088 3.912
15 H 0.053 0.947
16 C -0.178 4.178
17 C 0.065 3.935
18 O -0.382 6.382
19 C 0.147 3.853
20 H 0.067 0.933
21 C -0.125 4.125
22 C -0.061 4.061
23 C -0.210 4.210
24 C 0.115 3.885
25 O -0.335 6.335
26 C 0.018 3.982
27 C -0.163 4.163
28 C -0.076 4.076
29 C -0.118 4.118
30 H 0.067 0.933
31 H 0.051 0.949
32 H 0.068 0.932
33 H 0.039 0.961
34 H 0.061 0.939
35 H 0.263 0.737
36 H 0.333 0.667
37 H 0.081 0.919
38 H 0.069 0.931
39 H 0.052 0.948
40 H 0.118 0.882
41 H 0.134 0.866
42 H 0.150 0.850
43 H 0.062 0.938
44 H 0.065 0.935
45 H 0.119 0.881
46 H 0.140 0.860
47 H 0.137 0.863
48 H 0.060 0.940
49 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.289 10.801 14.290 24.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.175 4.175
3 C 0.089 3.911
4 H 0.014 0.986
5 C -0.535 4.535
6 H 0.050 0.950
7 C -0.190 4.190
8 N -0.594 5.594
9 Si 0.775 3.225
10 H -0.193 1.193
11 H -0.170 1.170
12 H -0.231 1.231
13 N -0.308 5.308
14 C -0.023 4.023
15 H 0.072 0.928
16 C -0.218 4.218
17 C -0.012 4.012
18 O -0.301 6.301
19 C 0.090 3.910
20 H 0.085 0.915
21 C -0.126 4.126
22 C -0.079 4.079
23 C -0.229 4.229
24 C 0.070 3.930
25 O -0.249 6.249
26 C -0.076 4.076
27 C -0.181 4.181
28 C -0.094 4.094
29 C -0.157 4.157
30 H 0.086 0.914
31 H 0.070 0.930
32 H 0.087 0.913
33 H 0.057 0.943
34 H 0.080 0.920
35 H 0.072 0.928
36 H 0.154 0.846
37 H 0.099 0.901
38 H 0.088 0.912
39 H 0.070 0.930
40 H 0.136 0.864
41 H 0.152 0.848
42 H 0.167 0.833
43 H 0.081 0.919
44 H 0.083 0.917
45 H 0.137 0.863
46 H 0.158 0.842
47 H 0.155 0.845
48 H 0.079 0.921
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -15.542 10.822 14.714 23.982
hybrid contribution -0.087 -0.389 -1.719 1.765
sum -15.628 10.433 12.994 22.846
Atomic orbital electron populations
1.21861 0.94333 1.02527 1.01940 1.22017 0.96394 0.98311 1.00808
1.19373 0.93350 0.90929 0.87441 0.98594 1.21314 0.91831 1.36052
1.04264 0.95046 1.25824 0.95895 0.96830 1.00489 1.70057 1.11181
1.47813 1.30381 0.85872 0.79598 0.79559 0.77463 1.19276 1.16952
1.23088 1.60478 1.36502 1.03420 1.30406 1.21490 0.95921 0.88449
0.96423 0.92838 1.22804 0.96324 1.03036 0.99615 1.22683 0.98614
0.97004 0.82865 1.87860 1.35517 1.69027 1.37703 1.20618 0.83288
0.97374 0.89750 0.91539 1.19616 1.02338 0.95736 0.94863 1.20910
0.96568 0.93575 0.96876 1.21443 1.05176 1.02266 0.93993 1.19210
0.95637 0.92664 0.85475 1.86041 1.75675 1.31117 1.32095 1.23338
0.99542 0.79976 1.04773 1.20549 1.05120 0.93545 0.98892 1.20942
0.96704 1.00236 0.91513 1.22053 0.98922 0.99916 0.94764 0.91395
0.92965 0.91290 0.94305 0.92014 0.92792 0.84609 0.90084 0.91222
0.92957 0.86401 0.84788 0.83277 0.91910 0.91668 0.86277 0.84179
0.84495 0.92083 0.91020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.35 9.64 71.98 0.69 -3.65 16
2 C -0.14 -5.47 5.02 30.59 0.15 -5.31 16
3 C 0.20 8.86 1.44 44.17 0.06 8.93 16
4 H 0.00 -0.16 6.30 -2.38 -0.02 -0.17 16
5 C -0.50 -28.33 9.03 25.60 0.23 -28.10 16
6 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16
7 C 0.01 0.34 5.45 84.66 0.46 0.80 16
8 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16
9 Si 0.95 44.86 24.41 68.60 1.67 46.53 16
10 H -0.27 -12.01 6.82 99.48 0.68 -11.33 16
11 H -0.25 -10.61 6.53 99.48 0.65 -9.96 16
12 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16
13 N -0.67 -25.72 5.63 -472.73 -2.66 -28.38 16
14 C 0.09 3.06 2.67 45.04 0.12 3.18 16
15 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16
16 C -0.18 -4.87 5.72 30.75 0.18 -4.70 16
17 C 0.06 1.50 6.59 72.08 0.47 1.97 16
18 O -0.38 -9.95 9.56 -148.98 -1.42 -11.38 16
19 C 0.15 4.06 2.61 29.88 0.08 4.14 16
20 H 0.07 1.92 7.33 -2.39 -0.02 1.90 16
21 C -0.13 -3.27 5.01 -19.85 -0.10 -3.37 16
22 C -0.06 -1.45 9.34 22.26 0.21 -1.24 16
23 C -0.21 -4.40 9.04 22.37 0.20 -4.20 16
24 C 0.12 2.63 6.69 22.51 0.15 2.78 16
25 O -0.34 -6.89 10.50 -92.41 -0.97 -7.86 16
26 C 0.02 0.21 9.81 113.37 1.11 1.32 16
27 C -0.16 -3.84 9.99 22.36 0.22 -3.62 16
28 C -0.08 -1.90 9.67 22.25 0.22 -1.68 16
29 C -0.12 -3.72 5.10 30.68 0.16 -3.56 16
30 H 0.07 1.70 6.30 -2.39 -0.02 1.69 16
31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
33 H 0.04 1.66 3.22 -2.39 -0.01 1.65 16
34 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16
35 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16
36 H 0.33 10.79 3.77 -89.69 -0.34 10.46 16
37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
38 H 0.07 1.95 7.53 -2.39 -0.02 1.93 16
39 H 0.05 1.19 6.06 -2.39 -0.01 1.18 16
40 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16
41 H 0.13 2.96 7.63 -2.91 -0.02 2.94 16
42 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16
43 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16
44 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16
45 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16
46 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16
47 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16
48 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16
49 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16
Total: -1.00 -69.52 372.30 2.06 -67.46
By element:
Atomic # 1 Polarization: 29.57 SS G_CDS: 0.52 Total: 30.09 kcal
Atomic # 6 Polarization: -40.91 SS G_CDS: 4.62 Total: -36.29 kcal
Atomic # 7 Polarization: -86.19 SS G_CDS: -2.36 Total: -88.55 kcal
Atomic # 8 Polarization: -16.85 SS G_CDS: -2.39 Total: -19.24 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 1.67 Total: 46.53 kcal
Total: -69.52 2.06 -67.46 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168610107.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.756 kcal
(2) G-P(sol) polarization free energy of solvation -69.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds