Wall clock time and date at job start Tue Mar 31 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21584 * 119.99640 * 359.97438 * 14 13 3 16 16 C 1.47533 * 120.00050 * 180.02562 * 14 13 3 17 17 C 1.39708 * 120.19420 * 359.97438 * 16 14 13 18 18 C 1.37788 * 119.90718 * 179.97438 * 17 16 14 19 19 C 1.50703 * 119.84726 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46817 * 59.99996 * 19 18 17 21 21 C 1.53000 * 109.46889 * 179.97438 * 19 18 17 22 22 C 1.52993 * 109.47397 * 299.99959 * 19 18 17 23 23 C 1.38546 * 120.30405 * 0.02562 * 18 17 16 24 24 C 1.38052 * 120.38799 * 359.97438 * 23 18 17 25 25 C 1.38712 * 120.08830 * 359.74590 * 24 23 18 26 26 O 1.35646 * 120.15770 * 180.27715 * 25 24 23 27 27 C 1.42902 * 116.99951 * 0.25575 * 26 25 24 28 28 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 30 30 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 32 32 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 35 35 H 1.08001 * 120.04578 * 359.95581 * 17 16 14 36 36 H 1.08999 * 109.47057 * 59.99878 * 20 19 18 37 37 H 1.09000 * 109.46746 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47115 * 299.99728 * 20 19 18 39 39 H 1.08998 * 109.47155 * 60.00640 * 21 19 18 40 40 H 1.09000 * 109.46993 * 179.97438 * 21 19 18 41 41 H 1.08997 * 109.47238 * 299.99600 * 21 19 18 42 42 H 1.09003 * 109.47180 * 59.99876 * 22 19 18 43 43 H 1.09000 * 109.47364 * 180.02562 * 22 19 18 44 44 H 1.09003 * 109.47260 * 300.00258 * 22 19 18 45 45 H 1.07999 * 119.80820 * 180.02562 * 23 18 17 46 46 H 1.07997 * 119.95831 * 180.02562 * 24 23 18 47 47 H 1.08998 * 109.47554 * 180.02562 * 27 26 25 48 48 H 1.09003 * 109.46721 * 299.99596 * 27 26 25 49 49 H 1.08997 * 109.47421 * 59.99490 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3412 2.6325 0.4319 16 6 0.0452 3.3244 2.6275 17 6 0.9344 3.3638 3.7044 18 6 0.5642 3.9824 4.8787 19 6 1.5242 4.0236 6.0396 20 6 2.8006 4.7556 5.6201 21 6 0.8752 4.7620 7.2120 22 6 1.8716 2.5956 6.4651 23 6 -0.6869 4.5656 4.9974 24 6 -1.5752 4.5339 3.9411 25 6 -1.2172 3.9207 2.7495 26 8 -2.0869 3.8936 1.7089 27 6 -3.3550 4.5219 1.9067 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8295 -0.0694 -2.9455 34 1 2.2720 2.1230 1.9978 35 1 1.9104 2.9098 3.6166 36 1 2.5531 5.7729 5.3170 37 1 3.4948 4.7858 6.4600 38 1 3.2631 4.2298 4.7847 39 1 -0.0342 4.2409 7.5110 40 1 1.5694 4.7914 8.0519 41 1 0.6282 5.7793 6.9086 42 1 2.3341 2.0699 5.6297 43 1 2.5656 2.6254 7.3051 44 1 0.9623 2.0741 6.7639 45 1 -0.9685 5.0487 5.9213 46 1 -2.5485 4.9912 4.0411 47 1 -3.9525 4.4281 0.9999 48 1 -3.8742 4.0395 2.7349 49 1 -3.2059 5.5769 2.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195474589.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:29 Heat of formation + Delta-G solvation = -65.264382 kcal Electronic energy + Delta-G solvation = -27990.828155 eV Core-core repulsion = 24303.766881 eV Total energy + Delta-G solvation = -3687.061275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.51665 -38.53646 -38.41275 -35.47848 -34.84558 -32.45514 -31.56390 -30.35238 -29.37524 -27.71632 -27.31083 -27.26756 -26.60492 -23.66796 -22.71618 -22.38995 -20.63711 -19.30249 -18.94234 -18.27226 -16.84393 -16.21574 -15.82042 -15.65518 -15.21429 -15.07511 -14.60133 -14.39333 -14.24954 -14.09854 -13.97596 -13.25636 -13.07543 -12.81997 -12.69283 -12.60150 -12.26218 -12.14129 -12.03755 -11.79988 -11.76043 -11.40071 -11.25865 -11.22520 -11.17281 -10.93259 -10.86312 -10.78366 -10.71389 -10.59987 -10.24639 -10.09050 -9.54696 -8.96990 -8.90933 -8.83208 -8.43398 -7.99722 -7.65929 -6.07144 -4.16000 1.09278 1.45295 3.26518 3.34314 3.36787 3.39023 3.40863 4.15339 4.28087 4.42232 4.50149 4.62517 4.87011 4.88321 4.93236 5.10655 5.16463 5.17813 5.24167 5.33904 5.44903 5.51392 5.53077 5.56783 5.64672 5.67156 5.73954 5.80632 5.83829 5.91251 5.97669 6.14257 6.21945 6.28886 6.34498 6.48147 6.56316 6.60398 6.76304 6.76942 7.14227 7.29418 7.46737 7.52300 7.57091 7.69565 7.83408 7.98719 8.25449 8.77831 8.86417 9.27928 9.51966 10.98214 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.004290 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.908173 B = 6524.863223 C = 8321.245927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.543 3.457 15 O -0.526 6.526 16 C -0.155 4.155 17 C -0.045 4.045 18 C -0.121 4.121 19 C -0.023 4.023 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.141 4.141 23 C -0.065 4.065 24 C -0.221 4.221 25 C 0.174 3.826 26 O -0.276 6.276 27 C 0.023 3.977 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.384 0.616 35 H 0.132 0.868 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.099 0.901 48 H 0.051 0.949 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 8.576 18.052 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.329 3.671 15 O -0.405 6.405 16 C -0.159 4.159 17 C -0.064 4.064 18 C -0.121 4.121 19 C -0.023 4.023 20 C -0.199 4.199 21 C -0.200 4.200 22 C -0.198 4.198 23 C -0.083 4.083 24 C -0.240 4.240 25 C 0.126 3.874 26 O -0.186 6.186 27 C -0.073 4.073 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.217 0.783 35 H 0.150 0.850 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.118 0.882 48 H 0.070 0.930 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.200 8.349 16.946 20.594 hybrid contribution 1.059 0.117 0.429 1.148 sum -7.141 8.466 17.376 20.605 Atomic orbital electron populations 1.21833 0.98311 0.97882 1.01379 1.21929 0.92657 0.99828 1.02147 1.18766 0.94087 0.89135 0.81022 0.93271 1.21277 0.90770 1.38610 1.06341 0.92126 1.24879 0.98478 0.94880 0.95427 1.69913 1.34927 1.37678 1.09417 0.86428 0.85063 0.77716 0.78085 1.19767 1.20924 1.20926 1.46412 1.14448 1.56284 1.18422 1.17881 0.83023 0.79556 0.86660 1.90781 1.51102 1.59142 1.39432 1.19774 0.93396 1.05819 0.96896 1.21050 0.98341 0.95859 0.91130 1.19567 0.95391 1.01833 0.95303 1.19407 0.94121 0.96204 0.92580 1.21928 0.96011 1.00415 1.01501 1.21957 1.00630 1.00095 0.97317 1.21922 1.01457 0.94958 1.01483 1.21015 0.92575 0.96812 0.97907 1.21165 1.01792 1.07230 0.93825 1.19091 0.89179 0.92527 0.86617 1.86438 1.24627 1.72509 1.35076 1.23102 0.84033 0.96895 1.03262 0.94175 0.93146 0.96032 0.88336 0.95151 0.92691 0.78291 0.85017 0.92516 0.92452 0.92021 0.92392 0.92438 0.92375 0.92054 0.92445 0.92536 0.85407 0.85298 0.88223 0.92992 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.32 16 3 C 0.27 7.02 2.24 -69.09 -0.16 6.86 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.98 11.28 55.43 0.63 -24.35 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.71 -15.41 4.97 -55.98 -0.28 -15.69 16 14 C 0.54 11.79 6.33 -12.47 -0.08 11.71 16 15 O -0.53 -13.16 12.30 -16.59 -0.20 -13.37 16 16 C -0.15 -2.73 5.89 -104.84 -0.62 -3.34 16 17 C -0.05 -0.64 8.18 -39.20 -0.32 -0.97 16 18 C -0.12 -1.43 4.76 -104.67 -0.50 -1.93 16 19 C -0.02 -0.22 0.85 -155.66 -0.13 -0.35 16 20 C -0.14 -1.34 8.28 37.16 0.31 -1.03 16 21 C -0.14 -1.10 7.13 37.16 0.26 -0.83 16 22 C -0.14 -1.31 8.28 37.15 0.31 -1.00 16 23 C -0.06 -0.72 8.96 -39.54 -0.35 -1.08 16 24 C -0.22 -2.74 9.03 -39.47 -0.36 -3.10 16 25 C 0.17 2.82 6.70 -38.69 -0.26 2.56 16 26 O -0.28 -4.72 8.57 -40.51 -0.35 -5.07 16 27 C 0.02 0.25 9.81 101.05 0.99 1.24 16 28 H 0.04 0.93 5.65 -51.93 -0.29 0.64 16 29 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 2.71 5.94 -51.93 -0.31 2.40 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.38 7.32 6.57 -40.82 -0.27 7.05 16 35 H 0.13 1.76 5.42 -52.49 -0.28 1.48 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 39 H 0.06 0.42 7.50 -51.93 -0.39 0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 42 H 0.06 0.61 7.37 -51.93 -0.38 0.23 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.13 1.08 5.86 -52.49 -0.31 0.78 16 46 H 0.13 1.25 6.30 -52.49 -0.33 0.91 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 49 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 LS Contribution 379.82 15.07 5.72 5.72 Total: -1.00 -31.92 379.82 -8.48 -40.40 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.86 Total: 6.89 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.12 Total: -10.28 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.35 Total: -40.04 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.55 Total: -18.44 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.92 -8.48 -40.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195474589.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.864 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds