Wall clock time and date at job start Tue Mar 31 2020 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21584 * 119.99640 * 359.97438 * 14 13 3 16 16 C 1.47533 * 120.00050 * 180.02562 * 14 13 3 17 17 C 1.39708 * 120.19420 * 359.97438 * 16 14 13 18 18 C 1.37788 * 119.90718 * 179.97438 * 17 16 14 19 19 C 1.50703 * 119.84726 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46817 * 59.99996 * 19 18 17 21 21 C 1.53000 * 109.46889 * 179.97438 * 19 18 17 22 22 C 1.52993 * 109.47397 * 299.99959 * 19 18 17 23 23 C 1.38546 * 120.30405 * 0.02562 * 18 17 16 24 24 C 1.38052 * 120.38799 * 359.97438 * 23 18 17 25 25 C 1.38712 * 120.08830 * 359.74590 * 24 23 18 26 26 O 1.35646 * 120.15770 * 180.27715 * 25 24 23 27 27 C 1.42902 * 116.99951 * 0.25575 * 26 25 24 28 28 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 30 30 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 32 32 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 35 35 H 1.08001 * 120.04578 * 359.95581 * 17 16 14 36 36 H 1.08999 * 109.47057 * 59.99878 * 20 19 18 37 37 H 1.09000 * 109.46746 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47115 * 299.99728 * 20 19 18 39 39 H 1.08998 * 109.47155 * 60.00640 * 21 19 18 40 40 H 1.09000 * 109.46993 * 179.97438 * 21 19 18 41 41 H 1.08997 * 109.47238 * 299.99600 * 21 19 18 42 42 H 1.09003 * 109.47180 * 59.99876 * 22 19 18 43 43 H 1.09000 * 109.47364 * 180.02562 * 22 19 18 44 44 H 1.09003 * 109.47260 * 300.00258 * 22 19 18 45 45 H 1.07999 * 119.80820 * 180.02562 * 23 18 17 46 46 H 1.07997 * 119.95831 * 180.02562 * 24 23 18 47 47 H 1.08998 * 109.47554 * 180.02562 * 27 26 25 48 48 H 1.09003 * 109.46721 * 299.99596 * 27 26 25 49 49 H 1.08997 * 109.47421 * 59.99490 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3412 2.6325 0.4319 16 6 0.0452 3.3244 2.6275 17 6 0.9344 3.3638 3.7044 18 6 0.5642 3.9824 4.8787 19 6 1.5242 4.0236 6.0396 20 6 2.8006 4.7556 5.6201 21 6 0.8752 4.7620 7.2120 22 6 1.8716 2.5956 6.4651 23 6 -0.6869 4.5656 4.9974 24 6 -1.5752 4.5339 3.9411 25 6 -1.2172 3.9207 2.7495 26 8 -2.0869 3.8936 1.7089 27 6 -3.3550 4.5219 1.9067 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8295 -0.0694 -2.9455 34 1 2.2720 2.1230 1.9978 35 1 1.9104 2.9098 3.6166 36 1 2.5531 5.7729 5.3170 37 1 3.4948 4.7858 6.4600 38 1 3.2631 4.2298 4.7847 39 1 -0.0342 4.2409 7.5110 40 1 1.5694 4.7914 8.0519 41 1 0.6282 5.7793 6.9086 42 1 2.3341 2.0699 5.6297 43 1 2.5656 2.6254 7.3051 44 1 0.9623 2.0741 6.7639 45 1 -0.9685 5.0487 5.9213 46 1 -2.5485 4.9912 4.0411 47 1 -3.9525 4.4281 0.9999 48 1 -3.8742 4.0395 2.7349 49 1 -3.2059 5.5769 2.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195474589.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:28 Heat of formation + Delta-G solvation = -83.336645 kcal Electronic energy + Delta-G solvation = -27991.611827 eV Core-core repulsion = 24303.766881 eV Total energy + Delta-G solvation = -3687.844947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.67866 -40.08111 -39.45604 -36.88958 -36.33762 -34.32821 -33.20873 -31.89407 -30.36467 -29.00774 -28.43207 -28.02806 -27.78500 -25.31632 -24.32810 -23.38016 -22.20216 -21.10271 -20.19061 -19.40957 -18.46444 -17.52889 -17.25189 -16.87630 -16.72497 -16.26970 -16.08479 -15.89774 -15.58741 -15.03593 -14.88274 -14.65717 -14.59431 -14.07773 -13.93908 -13.76272 -13.54887 -13.34821 -13.19157 -13.00625 -12.94100 -12.85681 -12.73168 -12.69510 -12.46253 -12.21808 -12.11487 -12.05305 -12.01577 -11.70124 -11.59985 -11.55455 -11.39042 -11.03676 -10.60621 -10.46967 -10.02955 -9.58188 -9.03151 -8.15439 -6.32979 -0.04999 0.41526 1.43999 1.44657 1.56989 2.07810 2.36190 2.41470 2.67006 2.91275 3.13919 3.66770 3.75120 3.84006 4.06204 4.20128 4.20484 4.35451 4.37816 4.39169 4.45293 4.47960 4.55767 4.60886 4.70857 4.75412 4.82824 4.85995 4.91664 4.98478 4.99054 5.06457 5.09740 5.13040 5.20297 5.27094 5.29515 5.39471 5.44233 5.48291 5.51079 5.56010 5.64184 5.68690 5.79007 5.80577 5.94962 6.17111 6.50411 6.74705 7.03454 7.34170 7.62968 8.90417 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.004290 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.908173 B = 6524.863223 C = 8321.245927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.539 3.461 15 O -0.570 6.570 16 C -0.192 4.192 17 C -0.046 4.046 18 C -0.117 4.117 19 C -0.021 4.021 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.049 4.049 24 C -0.213 4.213 25 C 0.157 3.843 26 O -0.320 6.320 27 C 0.014 3.986 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.397 0.603 35 H 0.132 0.868 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.167 0.833 46 H 0.162 0.838 47 H 0.104 0.896 48 H 0.073 0.927 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 9.809 21.744 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.354 5.354 14 C 0.328 3.672 15 O -0.451 6.451 16 C -0.196 4.196 17 C -0.065 4.065 18 C -0.117 4.117 19 C -0.021 4.021 20 C -0.200 4.200 21 C -0.199 4.199 22 C -0.199 4.199 23 C -0.067 4.067 24 C -0.231 4.231 25 C 0.109 3.891 26 O -0.232 6.232 27 C -0.081 4.081 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.150 0.850 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.184 0.816 46 H 0.179 0.821 47 H 0.122 0.878 48 H 0.092 0.908 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.964 9.596 20.684 24.152 hybrid contribution 0.901 -0.199 -0.665 1.137 sum -7.063 9.397 20.019 23.215 Atomic orbital electron populations 1.21648 0.97182 0.98936 1.00045 1.21774 0.93552 0.99191 1.01263 1.18359 0.93751 0.89064 0.81129 0.98657 1.21585 0.91227 1.38814 1.06905 0.91193 1.25781 1.03428 0.94288 0.94911 1.70066 1.37021 1.38286 1.09952 0.85307 0.78967 0.77899 0.78218 1.18422 1.20278 1.20977 1.46177 1.15262 1.56453 1.17543 1.18563 0.82078 0.78730 0.87851 1.90739 1.52168 1.60771 1.41446 1.19545 0.95565 1.08651 0.95860 1.21086 0.97845 0.96252 0.91318 1.19899 0.96349 1.00483 0.94987 1.19466 0.93636 0.96677 0.92367 1.21944 0.96335 1.00060 1.01647 1.21963 1.01154 1.00163 0.96610 1.21936 1.01767 0.94678 1.01549 1.21502 0.91513 0.94957 0.98706 1.21500 1.03326 1.05971 0.92315 1.19363 0.88721 0.93214 0.87835 1.86373 1.26682 1.73570 1.36541 1.23397 0.82137 0.97981 1.04539 0.94319 0.95642 0.93556 0.90751 0.94167 0.92589 0.76738 0.85035 0.92630 0.90845 0.93504 0.91544 0.91189 0.91618 0.93440 0.90863 0.92523 0.81612 0.82091 0.87770 0.90849 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.51 71.98 0.61 -5.30 16 2 C -0.12 -6.22 5.45 30.59 0.17 -6.05 16 3 C 0.28 15.29 2.24 44.25 0.10 15.39 16 4 H 0.00 -0.29 7.58 -2.38 -0.02 -0.31 16 5 C -0.55 -30.08 8.73 25.60 0.22 -29.86 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -53.66 11.28 21.45 0.24 -53.42 16 9 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.70 -32.32 4.97 -449.29 -2.23 -34.56 16 14 C 0.54 24.76 6.33 86.69 0.55 25.31 16 15 O -0.57 -30.56 12.30 16.94 0.21 -30.35 16 16 C -0.19 -6.95 5.89 -20.01 -0.12 -7.06 16 17 C -0.05 -1.31 8.18 22.52 0.18 -1.13 16 18 C -0.12 -2.50 4.76 -19.90 -0.09 -2.60 16 19 C -0.02 -0.34 0.85 -52.93 -0.05 -0.39 16 20 C -0.14 -2.37 8.28 71.98 0.60 -1.77 16 21 C -0.14 -1.54 7.13 71.98 0.51 -1.03 16 22 C -0.14 -2.30 8.28 71.98 0.60 -1.71 16 23 C -0.05 -0.91 8.96 22.30 0.20 -0.71 16 24 C -0.21 -4.67 9.03 22.34 0.20 -4.47 16 25 C 0.16 5.04 6.70 22.85 0.15 5.19 16 26 O -0.32 -11.19 8.57 -68.68 -0.59 -11.78 16 27 C 0.01 0.29 9.81 113.37 1.11 1.40 16 28 H 0.04 1.88 5.65 -2.38 -0.01 1.86 16 29 H 0.02 1.32 7.84 -2.39 -0.02 1.31 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 4.28 5.94 -2.38 -0.01 4.26 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 34 H 0.40 15.76 6.57 -92.71 -0.61 15.15 16 35 H 0.13 3.58 5.42 -2.91 -0.02 3.56 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.91 7.37 -2.39 -0.02 0.89 16 39 H 0.07 0.63 7.50 -2.39 -0.02 0.62 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.64 7.51 -2.39 -0.02 0.62 16 42 H 0.05 0.89 7.37 -2.39 -0.02 0.87 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.17 1.86 5.86 -2.91 -0.02 1.84 16 46 H 0.16 2.43 6.30 -2.91 -0.02 2.41 16 47 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 49 H 0.07 1.20 7.67 -2.39 -0.02 1.18 16 Total: -1.00 -74.05 379.82 5.39 -68.65 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.34 Total: 29.91 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.40 Total: -13.46 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.99 Total: -87.98 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.38 Total: -42.13 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.05 5.39 -68.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195474589.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.682 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds