Wall clock time and date at job start Tue Mar 31 2020 12:32:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.46851 * 2 1
4 4 N 1.46898 * 109.47102 * 179.61905 * 3 2 1
5 5 C 1.46898 * 111.00251 * 288.01141 * 4 3 2
6 6 C 1.50692 * 109.47325 * 160.36223 * 5 4 3
7 7 H 1.08002 * 120.00095 * 4.90039 * 6 5 4
8 8 C 1.37883 * 119.99969 * 184.90117 * 6 5 4
9 9 N 1.31514 * 119.99977 * 179.97438 * 8 6 5
10 10 Si 1.86794 * 119.99882 * 359.97438 * 8 6 5
11 11 H 1.48503 * 109.47313 * 90.00237 * 10 8 6
12 12 H 1.48503 * 109.46939 * 210.00147 * 10 8 6
13 13 H 1.48498 * 109.47290 * 329.99817 * 10 8 6
14 14 C 1.46906 * 111.00085 * 164.06161 * 4 3 2
15 15 C 1.53008 * 109.46696 * 293.95121 * 14 4 3
16 16 H 1.09000 * 109.46846 * 55.00482 * 15 14 4
17 17 C 1.52993 * 109.47162 * 295.00044 * 15 14 4
18 18 C 1.53006 * 109.46698 * 174.99948 * 15 14 4
19 19 C 1.50697 * 109.46941 * 185.00205 * 18 15 14
20 20 C 1.38250 * 119.92791 * 269.97902 * 19 18 15
21 21 C 1.38236 * 120.14670 * 179.79272 * 20 19 18
22 22 C 1.38557 * 120.02657 * 0.47393 * 21 20 19
23 23 C 1.39261 * 119.82408 * 359.52646 * 22 21 20
24 24 C 1.38241 * 119.93183 * 89.99690 * 19 18 15
25 25 O 1.36498 * 108.64120 * 180.24669 * 23 22 21
26 26 C 1.43986 * 105.48582 * 342.72449 * 25 23 22
27 27 O 1.36496 * 131.53172 * 179.83408 * 22 21 20
28 28 H 1.08996 * 109.47266 * 60.00574 * 1 2 3
29 29 H 1.09005 * 109.46608 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47128 * 299.99758 * 1 2 3
31 31 H 1.08998 * 109.47687 * 239.99801 * 2 1 3
32 32 H 1.08996 * 109.47266 * 119.99426 * 2 1 3
33 33 H 1.09003 * 109.47505 * 59.61436 * 3 2 1
34 34 H 1.09001 * 109.46902 * 299.61810 * 3 2 1
35 35 H 1.08996 * 109.47033 * 280.36474 * 5 4 3
36 36 H 1.09005 * 109.46731 * 40.36277 * 5 4 3
37 37 H 0.97004 * 119.99986 * 179.97438 * 9 8 6
38 38 H 1.08995 * 109.47023 * 173.95297 * 14 4 3
39 39 H 1.08996 * 109.46997 * 53.95009 * 14 4 3
40 40 H 1.08997 * 109.47563 * 59.99785 * 17 15 14
41 41 H 1.09004 * 109.46985 * 180.02562 * 17 15 14
42 42 H 1.09005 * 109.47196 * 299.99788 * 17 15 14
43 43 H 1.08999 * 109.46777 * 65.00438 * 18 15 14
44 44 H 1.08995 * 109.47024 * 304.99956 * 18 15 14
45 45 H 1.08000 * 119.93016 * 0.04332 * 20 19 18
46 46 H 1.07998 * 119.99182 * 180.32850 * 21 20 19
47 47 H 1.08004 * 119.97866 * 359.97438 * 24 19 18
48 48 H 1.09000 * 110.57004 * 268.54961 * 26 25 23
49 49 H 1.08996 * 110.57346 * 145.67877 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5089 1.4426 0.0092
5 6 4.0272 1.0215 1.3176
6 6 5.4575 0.5704 1.1699
7 1 5.9589 0.6681 0.2183
8 6 6.1259 0.0330 2.2495
9 7 7.3739 -0.3611 2.1204
10 14 5.2587 -0.1353 3.8954
11 1 4.5878 -1.4581 3.9685
12 1 6.2533 -0.0234 4.9925
13 1 4.2459 0.9419 4.0337
14 6 4.0377 2.7605 -0.3670
15 6 3.6828 3.0548 -1.8260
16 1 2.6054 2.9635 -1.9633
17 6 4.3996 2.0561 -2.7367
18 6 4.1235 4.4763 -2.1812
19 6 3.6654 4.8101 -3.5775
20 6 4.4845 4.5344 -4.6566
21 6 4.0670 4.8347 -5.9397
22 6 2.8293 5.4223 -6.1465
23 6 2.0042 5.7000 -5.0595
24 6 2.4271 5.3915 -3.7767
25 8 0.8511 6.2664 -5.5206
26 6 1.1473 6.7063 -6.8592
27 8 2.1933 5.8148 -7.2886
28 1 -0.3633 0.5137 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8899
31 1 1.8934 -0.5138 -0.8899
32 1 1.8934 -0.5137 0.8900
33 1 1.6710 1.9584 0.8865
34 1 1.6822 1.9543 -0.8934
35 1 3.9804 1.8590 2.0136
36 1 3.4240 0.1977 1.6993
37 1 7.8443 -0.7389 2.8800
38 1 5.1212 2.7646 -0.2487
39 1 3.5992 3.5246 0.2748
40 1 4.0858 1.0434 -2.4836
41 1 4.1472 2.2660 -3.7761
42 1 5.4771 2.1475 -2.5993
43 1 5.2102 4.5434 -2.1296
44 1 3.6821 5.1805 -1.4760
45 1 5.4510 4.0797 -4.4971
46 1 4.7067 4.6134 -6.7813
47 1 1.7893 5.6057 -2.9319
48 1 1.5011 7.7373 -6.8540
49 1 0.2705 6.6044 -7.4987
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001208222914.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:03
Heat of formation + Delta-G solvation = -47.639613 kcal
Electronic energy + Delta-G solvation = -27007.983263 eV
Core-core repulsion = 23321.686256 eV
Total energy + Delta-G solvation = -3686.297007 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.32579 -38.90001 -37.53635 -36.46844 -34.74410 -33.01607 -32.02884 -30.84692
-30.13045 -27.82313 -26.79285 -26.29965 -25.53881 -23.72575 -23.06064 -22.12793
-21.37844 -20.19786 -19.12751 -18.09284 -17.69261 -17.52713 -16.82156 -16.35655
-15.26155 -14.82939 -14.80290 -14.64224 -14.41839 -14.15489 -14.02524 -13.87702
-13.59615 -13.37318 -13.17030 -12.99726 -12.67129 -12.42051 -12.29568 -12.10877
-11.88692 -11.76018 -11.57588 -11.22339 -11.16597 -11.05048 -10.83616 -10.60094
-10.56125 -10.46068 -10.29945 -10.15110 -9.88671 -9.62742 -9.23695 -8.95215
-8.52938 -8.12676 -7.29548 -6.02380 -3.98176 1.00487 1.08684 2.56075
3.22634 3.29065 3.36883 3.38918 3.43756 4.32878 4.39334 4.44084
4.56345 4.67112 4.83337 4.88893 4.99350 5.12246 5.23217 5.30008
5.33405 5.39427 5.42572 5.50109 5.52786 5.76594 5.78297 5.84890
5.91514 5.94253 5.96250 6.03099 6.11245 6.12407 6.21085 6.26896
6.28376 6.36224 6.39819 6.48871 6.52016 6.59341 6.74078 6.78913
6.89096 6.95910 6.96739 6.98329 7.68070 7.97217 8.11180 8.70665
9.08279 9.60441 11.10969
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.018232 B = 0.002790 C = 0.002552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1535.399957 B =10034.925436 C =10970.152003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.120 4.120
3 C 0.051 3.949
4 N -0.523 5.523
5 C 0.161 3.839
6 C -0.501 4.501
7 H 0.081 0.919
8 C 0.067 3.933
9 N -0.902 5.902
10 Si 0.872 3.128
11 H -0.277 1.277
12 H -0.287 1.287
13 H -0.269 1.269
14 C 0.068 3.932
15 C -0.081 4.081
16 H 0.066 0.934
17 C -0.137 4.137
18 C -0.077 4.077
19 C -0.055 4.055
20 C -0.103 4.103
21 C -0.097 4.097
22 C 0.018 3.982
23 C 0.030 3.970
24 C -0.099 4.099
25 O -0.311 6.311
26 C 0.214 3.786
27 O -0.312 6.312
28 H 0.049 0.951
29 H 0.051 0.949
30 H 0.048 0.952
31 H 0.068 0.932
32 H 0.064 0.936
33 H 0.019 0.981
34 H 0.064 0.936
35 H -0.014 1.014
36 H 0.025 0.975
37 H 0.262 0.738
38 H 0.086 0.914
39 H 0.017 0.983
40 H 0.070 0.930
41 H 0.042 0.958
42 H 0.053 0.947
43 H 0.081 0.919
44 H 0.072 0.928
45 H 0.141 0.859
46 H 0.134 0.866
47 H 0.133 0.867
48 H 0.081 0.919
49 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.598 13.192 -15.015 23.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.158 4.158
3 C -0.078 4.078
4 N -0.247 5.247
5 C 0.035 3.965
6 C -0.540 4.540
7 H 0.099 0.901
8 C -0.134 4.134
9 N -0.541 5.541
10 Si 0.699 3.301
11 H -0.202 1.202
12 H -0.213 1.213
13 H -0.194 1.194
14 C -0.060 4.060
15 C -0.100 4.100
16 H 0.084 0.916
17 C -0.194 4.194
18 C -0.114 4.114
19 C -0.055 4.055
20 C -0.121 4.121
21 C -0.116 4.116
22 C -0.026 4.026
23 C -0.014 4.014
24 C -0.118 4.118
25 O -0.228 6.228
26 C 0.102 3.898
27 O -0.229 6.229
28 H 0.068 0.932
29 H 0.070 0.930
30 H 0.067 0.933
31 H 0.087 0.913
32 H 0.083 0.917
33 H 0.037 0.963
34 H 0.083 0.917
35 H 0.003 0.997
36 H 0.043 0.957
37 H 0.072 0.928
38 H 0.105 0.895
39 H 0.036 0.964
40 H 0.089 0.911
41 H 0.061 0.939
42 H 0.072 0.928
43 H 0.099 0.901
44 H 0.090 0.910
45 H 0.159 0.841
46 H 0.152 0.848
47 H 0.151 0.849
48 H 0.099 0.901
49 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -11.468 12.751 -15.385 23.039
hybrid contribution -0.875 0.585 1.407 1.757
sum -12.343 13.335 -13.978 22.925
Atomic orbital electron populations
1.21747 0.96702 1.01093 1.01103 1.21511 0.93986 0.97281 1.03031
1.22157 0.89928 0.96382 0.99297 1.61917 1.04674 1.25805 1.32259
1.20203 0.96778 0.94431 0.85088 1.21040 0.94558 1.39782 0.98610
0.90101 1.24893 0.94778 0.95289 0.98433 1.69892 1.10295 1.42770
1.31152 0.86920 0.79730 0.78928 0.84511 1.20236 1.21295 1.19412
1.22044 1.01656 0.89381 0.92946 1.21174 1.00113 0.92678 0.96056
0.91563 1.21752 1.00208 1.00274 0.97209 1.20706 1.01993 0.97634
0.91116 1.19700 0.92799 0.96497 0.96538 1.20934 1.00722 0.99947
0.90476 1.20084 0.92224 1.01039 0.98247 1.19781 0.95298 1.03821
0.83712 1.19756 0.85416 1.01417 0.94786 1.19970 0.96589 1.02183
0.93047 1.87354 1.30924 1.74948 1.29535 1.25571 0.90410 0.93389
0.80460 1.87342 1.45351 1.62282 1.27885 0.93167 0.93036 0.93318
0.91341 0.91738 0.96292 0.91733 0.99675 0.95683 0.92776 0.89527
0.96444 0.91129 0.93929 0.92826 0.90082 0.90953 0.84134 0.84848
0.84900 0.90129 0.85401
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16
2 C -0.12 -1.92 6.00 -26.73 -0.16 -2.08 16
3 C 0.05 0.85 4.83 -3.82 -0.02 0.84 16
4 N -0.52 -10.38 3.83 -236.07 -0.91 -11.29 16
5 C 0.16 3.82 3.65 -4.98 -0.02 3.80 16
6 C -0.50 -13.92 9.17 -34.44 -0.32 -14.24 16
7 H 0.08 2.44 7.89 -52.49 -0.41 2.02 16
8 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16
9 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16
10 Si 0.87 21.42 27.37 -169.99 -4.65 16.77 16
11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
13 H -0.27 -6.41 6.69 56.52 0.38 -6.03 16
14 C 0.07 1.19 4.17 -3.82 -0.02 1.17 16
15 C -0.08 -1.14 2.32 -90.62 -0.21 -1.35 16
16 H 0.07 0.93 6.10 -51.93 -0.32 0.61 16
17 C -0.14 -2.01 8.65 37.15 0.32 -1.69 16
18 C -0.08 -0.89 4.84 -27.88 -0.13 -1.02 16
19 C -0.05 -0.62 4.71 -104.62 -0.49 -1.11 16
20 C -0.10 -1.08 7.95 -39.58 -0.31 -1.40 16
21 C -0.10 -1.04 10.06 -39.46 -0.40 -1.43 16
22 C 0.02 0.21 7.15 -39.08 -0.28 -0.07 16
23 C 0.03 0.37 7.15 -39.09 -0.28 0.09 16
24 C -0.10 -1.15 9.71 -39.47 -0.38 -1.53 16
25 O -0.31 -3.59 11.40 -45.68 -0.52 -4.11 16
26 C 0.21 1.76 8.89 101.05 0.90 2.66 16
27 O -0.31 -3.51 11.40 -45.68 -0.52 -4.03 16
28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
32 H 0.06 1.15 6.53 -51.93 -0.34 0.81 16
33 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16
34 H 0.06 0.98 5.87 -51.93 -0.30 0.67 16
35 H -0.01 -0.35 7.40 -51.93 -0.38 -0.74 16
36 H 0.03 0.60 5.40 -51.93 -0.28 0.32 16
37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
38 H 0.09 1.71 7.32 -51.93 -0.38 1.33 16
39 H 0.02 0.30 8.12 -51.93 -0.42 -0.13 16
40 H 0.07 1.19 7.75 -51.93 -0.40 0.79 16
41 H 0.04 0.55 6.26 -51.93 -0.33 0.23 16
42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
43 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16
44 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16
45 H 0.14 1.29 8.03 -52.49 -0.42 0.87 16
46 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16
47 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16
48 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
49 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16
LS Contribution 385.83 15.07 5.81 5.81
Total: -1.00 -31.39 385.83 -9.75 -41.15
By element:
Atomic # 1 Polarization: 7.57 SS G_CDS: -8.21 Total: -0.64 kcal
Atomic # 6 Polarization: -15.54 SS G_CDS: -1.53 Total: -17.07 kcal
Atomic # 7 Polarization: -37.74 SS G_CDS: -0.13 Total: -37.88 kcal
Atomic # 8 Polarization: -7.10 SS G_CDS: -1.04 Total: -8.14 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -4.65 Total: 16.77 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -31.39 -9.75 -41.15 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001208222914.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.494 kcal
(2) G-P(sol) polarization free energy of solvation -31.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.885 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.640 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds