Wall clock time and date at job start Tue Mar 31 2020 12:32:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.46851 * 2 1
4 4 N 1.46898 * 109.47102 * 179.61905 * 3 2 1
5 5 C 1.46898 * 111.00251 * 288.01141 * 4 3 2
6 6 C 1.50692 * 109.47325 * 160.36223 * 5 4 3
7 7 H 1.08002 * 120.00095 * 4.90039 * 6 5 4
8 8 C 1.37883 * 119.99969 * 184.90117 * 6 5 4
9 9 N 1.31514 * 119.99977 * 179.97438 * 8 6 5
10 10 Si 1.86794 * 119.99882 * 359.97438 * 8 6 5
11 11 H 1.48503 * 109.47313 * 90.00237 * 10 8 6
12 12 H 1.48503 * 109.46939 * 210.00147 * 10 8 6
13 13 H 1.48498 * 109.47290 * 329.99817 * 10 8 6
14 14 C 1.46906 * 111.00085 * 164.06161 * 4 3 2
15 15 C 1.53008 * 109.46696 * 293.95121 * 14 4 3
16 16 H 1.09000 * 109.46846 * 55.00482 * 15 14 4
17 17 C 1.52993 * 109.47162 * 295.00044 * 15 14 4
18 18 C 1.53006 * 109.46698 * 174.99948 * 15 14 4
19 19 C 1.50697 * 109.46941 * 185.00205 * 18 15 14
20 20 C 1.38250 * 119.92791 * 269.97902 * 19 18 15
21 21 C 1.38236 * 120.14670 * 179.79272 * 20 19 18
22 22 C 1.38557 * 120.02657 * 0.47393 * 21 20 19
23 23 C 1.39261 * 119.82408 * 359.52646 * 22 21 20
24 24 C 1.38241 * 119.93183 * 89.99690 * 19 18 15
25 25 O 1.36498 * 108.64120 * 180.24669 * 23 22 21
26 26 C 1.43986 * 105.48582 * 342.72449 * 25 23 22
27 27 O 1.36496 * 131.53172 * 179.83408 * 22 21 20
28 28 H 1.08996 * 109.47266 * 60.00574 * 1 2 3
29 29 H 1.09005 * 109.46608 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47128 * 299.99758 * 1 2 3
31 31 H 1.08998 * 109.47687 * 239.99801 * 2 1 3
32 32 H 1.08996 * 109.47266 * 119.99426 * 2 1 3
33 33 H 1.09003 * 109.47505 * 59.61436 * 3 2 1
34 34 H 1.09001 * 109.46902 * 299.61810 * 3 2 1
35 35 H 1.08996 * 109.47033 * 280.36474 * 5 4 3
36 36 H 1.09005 * 109.46731 * 40.36277 * 5 4 3
37 37 H 0.97004 * 119.99986 * 179.97438 * 9 8 6
38 38 H 1.08995 * 109.47023 * 173.95297 * 14 4 3
39 39 H 1.08996 * 109.46997 * 53.95009 * 14 4 3
40 40 H 1.08997 * 109.47563 * 59.99785 * 17 15 14
41 41 H 1.09004 * 109.46985 * 180.02562 * 17 15 14
42 42 H 1.09005 * 109.47196 * 299.99788 * 17 15 14
43 43 H 1.08999 * 109.46777 * 65.00438 * 18 15 14
44 44 H 1.08995 * 109.47024 * 304.99956 * 18 15 14
45 45 H 1.08000 * 119.93016 * 0.04332 * 20 19 18
46 46 H 1.07998 * 119.99182 * 180.32850 * 21 20 19
47 47 H 1.08004 * 119.97866 * 359.97438 * 24 19 18
48 48 H 1.09000 * 110.57004 * 268.54961 * 26 25 23
49 49 H 1.08996 * 110.57346 * 145.67877 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5089 1.4426 0.0092
5 6 4.0272 1.0215 1.3176
6 6 5.4575 0.5704 1.1699
7 1 5.9589 0.6681 0.2183
8 6 6.1259 0.0330 2.2495
9 7 7.3739 -0.3611 2.1204
10 14 5.2587 -0.1353 3.8954
11 1 4.5878 -1.4581 3.9685
12 1 6.2533 -0.0234 4.9925
13 1 4.2459 0.9419 4.0337
14 6 4.0377 2.7605 -0.3670
15 6 3.6828 3.0548 -1.8260
16 1 2.6054 2.9635 -1.9633
17 6 4.3996 2.0561 -2.7367
18 6 4.1235 4.4763 -2.1812
19 6 3.6654 4.8101 -3.5775
20 6 4.4845 4.5344 -4.6566
21 6 4.0670 4.8347 -5.9397
22 6 2.8293 5.4223 -6.1465
23 6 2.0042 5.7000 -5.0595
24 6 2.4271 5.3915 -3.7767
25 8 0.8511 6.2664 -5.5206
26 6 1.1473 6.7063 -6.8592
27 8 2.1933 5.8148 -7.2886
28 1 -0.3633 0.5137 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8899
31 1 1.8934 -0.5138 -0.8899
32 1 1.8934 -0.5137 0.8900
33 1 1.6710 1.9584 0.8865
34 1 1.6822 1.9543 -0.8934
35 1 3.9804 1.8590 2.0136
36 1 3.4240 0.1977 1.6993
37 1 7.8443 -0.7389 2.8800
38 1 5.1212 2.7646 -0.2487
39 1 3.5992 3.5246 0.2748
40 1 4.0858 1.0434 -2.4836
41 1 4.1472 2.2660 -3.7761
42 1 5.4771 2.1475 -2.5993
43 1 5.2102 4.5434 -2.1296
44 1 3.6821 5.1805 -1.4760
45 1 5.4510 4.0797 -4.4971
46 1 4.7067 4.6134 -6.7813
47 1 1.7893 5.6057 -2.9319
48 1 1.5011 7.7373 -6.8540
49 1 0.2705 6.6044 -7.4987
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001208222914.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:02
Heat of formation + Delta-G solvation = -65.535677 kcal
Electronic energy + Delta-G solvation = -27008.759295 eV
Core-core repulsion = 23321.686256 eV
Total energy + Delta-G solvation = -3687.073039 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-43.10316 -39.94167 -38.82604 -37.26394 -35.91456 -34.86218 -33.58342 -31.79155
-31.11761 -29.62801 -27.78775 -27.41999 -26.41705 -25.25699 -23.91744 -23.37393
-22.62501 -21.58973 -20.46487 -18.96240 -18.87190 -18.50064 -18.29795 -17.14843
-16.80468 -16.17547 -16.10970 -15.72825 -15.52504 -15.43533 -15.22803 -14.85592
-14.75563 -14.58337 -14.36502 -13.97589 -13.90380 -13.80273 -13.49241 -13.38465
-13.29993 -12.90613 -12.85403 -12.57160 -12.52056 -12.21386 -12.11370 -12.01300
-11.90936 -11.78030 -11.65323 -11.47089 -11.45139 -11.26038 -11.01367 -10.71773
-9.79885 -8.96707 -8.88781 -8.23990 -6.24820 0.14629 0.25210 1.34900
1.35661 1.46148 1.81467 2.36336 2.54013 2.58178 3.08293 3.27237
3.51452 3.78313 3.82289 3.98285 4.06197 4.10984 4.20249 4.24601
4.27482 4.32670 4.34602 4.38533 4.54982 4.59214 4.62453 4.69164
4.75876 4.85284 4.91026 4.96948 5.00623 5.03956 5.08657 5.10599
5.13901 5.17515 5.22682 5.25047 5.30413 5.37950 5.46169 5.47468
5.54592 5.59770 5.64371 5.71267 6.09161 6.15830 6.51966 6.74496
6.81742 7.38029 8.92726
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.018232 B = 0.002790 C = 0.002552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1535.399957 B =10034.925436 C =10970.152003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.120 4.120
3 C 0.052 3.948
4 N -0.538 5.538
5 C 0.172 3.828
6 C -0.503 4.503
7 H 0.040 0.960
8 C 0.008 3.992
9 N -0.948 5.948
10 Si 0.940 3.060
11 H -0.268 1.268
12 H -0.283 1.283
13 H -0.254 1.254
14 C 0.070 3.930
15 C -0.069 4.069
16 H 0.074 0.926
17 C -0.130 4.130
18 C -0.069 4.069
19 C -0.059 4.059
20 C -0.104 4.104
21 C -0.101 4.101
22 C 0.006 3.994
23 C 0.015 3.985
24 C -0.104 4.104
25 O -0.327 6.327
26 C 0.205 3.795
27 O -0.326 6.326
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.054 0.946
31 H 0.059 0.941
32 H 0.042 0.958
33 H 0.023 0.977
34 H 0.086 0.914
35 H -0.018 1.018
36 H 0.027 0.973
37 H 0.265 0.735
38 H 0.054 0.946
39 H 0.027 0.973
40 H 0.043 0.957
41 H 0.061 0.939
42 H 0.042 0.958
43 H 0.082 0.918
44 H 0.084 0.916
45 H 0.152 0.848
46 H 0.151 0.849
47 H 0.142 0.858
48 H 0.102 0.898
49 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.921 14.322 -15.281 25.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.158 4.158
3 C -0.075 4.075
4 N -0.261 5.261
5 C 0.045 3.955
6 C -0.542 4.542
7 H 0.059 0.941
8 C -0.189 4.189
9 N -0.590 5.590
10 Si 0.764 3.236
11 H -0.193 1.193
12 H -0.209 1.209
13 H -0.178 1.178
14 C -0.058 4.058
15 C -0.087 4.087
16 H 0.092 0.908
17 C -0.188 4.188
18 C -0.107 4.107
19 C -0.060 4.060
20 C -0.122 4.122
21 C -0.119 4.119
22 C -0.038 4.038
23 C -0.029 4.029
24 C -0.123 4.123
25 O -0.244 6.244
26 C 0.094 3.906
27 O -0.243 6.243
28 H 0.083 0.917
29 H 0.080 0.920
30 H 0.074 0.926
31 H 0.077 0.923
32 H 0.060 0.940
33 H 0.041 0.959
34 H 0.104 0.896
35 H -0.001 1.001
36 H 0.045 0.955
37 H 0.074 0.926
38 H 0.073 0.927
39 H 0.045 0.955
40 H 0.062 0.938
41 H 0.080 0.920
42 H 0.061 0.939
43 H 0.101 0.899
44 H 0.102 0.898
45 H 0.170 0.830
46 H 0.169 0.831
47 H 0.160 0.840
48 H 0.120 0.880
49 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -13.815 13.898 -15.673 25.092
hybrid contribution -0.130 0.273 1.341 1.375
sum -13.945 14.171 -14.331 24.508
Atomic orbital electron populations
1.21679 0.93830 1.02186 1.02138 1.21504 0.96477 0.96342 1.01468
1.22247 0.87590 0.97264 1.00439 1.61826 1.06928 1.27421 1.29968
1.19932 0.94341 0.94162 0.87071 1.21254 0.96596 1.39310 0.96992
0.94135 1.25774 0.95427 0.95058 1.02645 1.70045 1.12127 1.44274
1.32532 0.85820 0.78831 0.79580 0.79337 1.19283 1.20853 1.17822
1.22036 0.99691 0.88567 0.95531 1.21042 1.00320 0.94085 0.93283
0.90808 1.21670 0.99552 0.98996 0.98553 1.20596 1.02199 0.96010
0.91851 1.19632 0.93005 0.97083 0.96240 1.21120 1.01096 0.99558
0.90377 1.20328 0.92199 1.00509 0.98864 1.20039 0.95747 1.04032
0.83998 1.19945 0.85861 1.01915 0.95141 1.20112 0.96786 1.02081
0.93321 1.87319 1.30959 1.75132 1.30975 1.26075 0.91077 0.93828
0.79609 1.87311 1.46018 1.62977 1.28011 0.91718 0.92003 0.92647
0.92267 0.93965 0.95915 0.89574 1.00084 0.95535 0.92631 0.92707
0.95508 0.93766 0.91970 0.93906 0.89933 0.89757 0.82998 0.83137
0.83996 0.88021 0.82382
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.23 9.91 71.98 0.71 -2.51 16
2 C -0.12 -3.69 6.00 30.60 0.18 -3.51 16
3 C 0.05 1.68 4.83 86.30 0.42 2.09 16
4 N -0.54 -21.38 3.83 -900.79 -3.45 -24.83 16
5 C 0.17 8.19 3.65 85.55 0.31 8.50 16
6 C -0.50 -28.85 9.17 25.60 0.23 -28.62 16
7 H 0.04 2.59 7.89 -2.91 -0.02 2.56 16
8 C 0.01 0.45 5.47 84.66 0.46 0.92 16
9 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16
10 Si 0.94 44.35 27.37 68.60 1.88 46.23 16
11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
13 H -0.25 -11.29 6.69 99.48 0.67 -10.62 16
14 C 0.07 2.44 4.17 86.30 0.36 2.80 16
15 C -0.07 -1.86 2.32 -10.79 -0.03 -1.88 16
16 H 0.07 1.92 6.10 -2.39 -0.01 1.90 16
17 C -0.13 -3.82 8.65 71.98 0.62 -3.20 16
18 C -0.07 -1.50 4.84 29.85 0.14 -1.35 16
19 C -0.06 -1.24 4.71 -19.86 -0.09 -1.33 16
20 C -0.10 -2.02 7.95 22.27 0.18 -1.85 16
21 C -0.10 -1.99 10.06 22.35 0.22 -1.76 16
22 C 0.01 0.13 7.15 22.59 0.16 0.29 16
23 C 0.02 0.36 7.15 22.59 0.16 0.52 16
24 C -0.10 -2.24 9.71 22.34 0.22 -2.03 16
25 O -0.33 -7.04 11.40 -76.02 -0.87 -7.90 16
26 C 0.20 2.96 8.89 113.37 1.01 3.97 16
27 O -0.33 -6.84 11.40 -76.00 -0.87 -7.71 16
28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
29 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16
30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
32 H 0.04 1.47 6.53 -2.39 -0.02 1.46 16
33 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16
34 H 0.09 2.39 5.87 -2.39 -0.01 2.38 16
35 H -0.02 -0.89 7.40 -2.39 -0.02 -0.91 16
36 H 0.03 1.26 5.40 -2.38 -0.01 1.25 16
37 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16
38 H 0.05 2.25 7.32 -2.39 -0.02 2.24 16
39 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16
40 H 0.04 1.52 7.75 -2.39 -0.02 1.50 16
41 H 0.06 1.55 6.26 -2.39 -0.01 1.54 16
42 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16
43 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16
44 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16
45 H 0.15 2.56 8.03 -2.91 -0.02 2.54 16
46 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16
47 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16
48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
49 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16
Total: -1.00 -69.54 385.83 3.15 -66.39
By element:
Atomic # 1 Polarization: 14.88 SS G_CDS: 0.88 Total: 15.75 kcal
Atomic # 6 Polarization: -34.22 SS G_CDS: 5.28 Total: -28.93 kcal
Atomic # 7 Polarization: -80.67 SS G_CDS: -3.16 Total: -83.83 kcal
Atomic # 8 Polarization: -13.88 SS G_CDS: -1.73 Total: -15.62 kcal
Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal
Total: -69.54 3.15 -66.39 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001208222914.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.856 kcal
(2) G-P(sol) polarization free energy of solvation -69.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds